Evaluation
- ID
- 00beb441-234d-49a3-a4e6-e5212b2a92a5
- Submission ID
- 6450f4b0-c047-4d79-be96-d3b7177ed444
- Method ID
- b65f6cbb-4862-4706-8e8c-6a803509d88c
- Status
-
Succeeded
- User
-
agaldran
- Challenge
-
PUMA
- Phase
-
Track 1: Final test phase
- Algorithm
-
Tecnalia Tissue + 3Nuclei - the good one
(Image Version fd5e0e12-9835-4fbc-8704-630cb940837b
)
- Submission created
- March 15, 2025, 9:20 p.m.
- Result created
- March 15, 2025, 9:20 p.m.
- Position on leaderboard
-
6
- Comment:
- instance-via-semantic
Metrics
{
"results": [
{
"filename": "final_test_set_metastatic_roi_001.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6685502305218703
},
"micro": {
"recall": 0.8185053380782918,
"f1_score": 0.7931034482758621,
"precision": 0.7692307692307693
},
"nuclei_other": {
"FN": 2,
"FP": 24,
"TP": 7,
"recall": 0.7777777777777778,
"f1_score": 0.35000000000000003,
"precision": 0.22580645161290322
},
"nuclei_tumor": {
"FN": 43,
"FP": 42,
"TP": 201,
"recall": 0.8237704918032787,
"f1_score": 0.8254620123203285,
"precision": 0.8271604938271605
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 3,
"TP": 22,
"recall": 0.7857142857142857,
"f1_score": 0.830188679245283,
"precision": 0.88
}
},
"tissue_metrics": {
"average_dice": 0.7160896982647296,
"tissue_tumor": 0.9921980156836979,
"tissue_stroma": 1.5624997558594132e-07,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5882503193899743
}
},
{
"filename": "final_test_set_metastatic_roi_002.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5003520225294419
},
"micro": {
"recall": 0.7978723404255319,
"f1_score": 0.7989347536617843,
"precision": 0.8
},
"nuclei_other": {
"FN": 4,
"FP": 26,
"TP": 1,
"recall": 0.2,
"f1_score": 0.0625,
"precision": 0.037037037037037035
},
"nuclei_tumor": {
"FN": 138,
"FP": 66,
"TP": 549,
"recall": 0.7991266375545851,
"f1_score": 0.8433179723502303,
"precision": 0.8926829268292683
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 58,
"TP": 50,
"recall": 0.8333333333333334,
"f1_score": 0.5952380952380952,
"precision": 0.46296296296296297
}
},
"tissue_metrics": {
"average_dice": 0.5921871277578213,
"tissue_tumor": 0.9609355955584532,
"tissue_stroma": 1.2720704216567355e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 4.31034464179549e-08
}
},
{
"filename": "final_test_set_metastatic_roi_003.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6552233296419342
},
"micro": {
"recall": 0.7949640287769785,
"f1_score": 0.7892857142857144,
"precision": 0.7836879432624113
},
"nuclei_other": {
"FN": 12,
"FP": 36,
"TP": 19,
"recall": 0.6129032258064516,
"f1_score": 0.4418604651162791,
"precision": 0.34545454545454546
},
"nuclei_tumor": {
"FN": 45,
"FP": 21,
"TP": 198,
"recall": 0.8148148148148148,
"f1_score": 0.8571428571428571,
"precision": 0.9041095890410958
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 4,
"TP": 4,
"recall": 1.0,
"f1_score": 0.6666666666666666,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.7204551456407902,
"tissue_tumor": 0.9972523861740664,
"tissue_stroma": 3.0712530618204757e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6050233389586316
}
},
{
"filename": "final_test_set_metastatic_roi_004.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4718663428114051
},
"micro": {
"recall": 0.7178082191780822,
"f1_score": 0.7621818181818182,
"precision": 0.8124031007751938
},
"nuclei_other": {
"FN": 89,
"FP": 10,
"TP": 2,
"recall": 0.02197802197802198,
"f1_score": 0.03883495145631068,
"precision": 0.16666666666666666
},
"nuclei_tumor": {
"FN": 86,
"FP": 84,
"TP": 490,
"recall": 0.8506944444444444,
"f1_score": 0.8521739130434782,
"precision": 0.8536585365853658
},
"nuclei_lymphocyte": {
"FN": 31,
"FP": 27,
"TP": 32,
"recall": 0.5079365079365079,
"f1_score": 0.5245901639344263,
"precision": 0.5423728813559322
}
},
"tissue_metrics": {
"average_dice": 0.685277224170749,
"tissue_tumor": 0.953117752783174,
"tissue_stroma": 0.47326834147482666,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.6595743973517452e-08
}
},
{
"filename": "final_test_set_metastatic_roi_005.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7404478708883921
},
"micro": {
"recall": 0.7512116316639742,
"f1_score": 0.782169890664424,
"precision": 0.8157894736842105
},
"nuclei_other": {
"FN": 80,
"FP": 22,
"TP": 70,
"recall": 0.4666666666666667,
"f1_score": 0.578512396694215,
"precision": 0.7608695652173914
},
"nuclei_tumor": {
"FN": 41,
"FP": 50,
"TP": 143,
"recall": 0.7771739130434783,
"f1_score": 0.7586206896551724,
"precision": 0.7409326424870466
},
"nuclei_lymphocyte": {
"FN": 33,
"FP": 33,
"TP": 252,
"recall": 0.8842105263157894,
"f1_score": 0.8842105263157894,
"precision": 0.8842105263157894
}
},
"tissue_metrics": {
"average_dice": 0.9709636654199791,
"tissue_tumor": 0.9273843106920858,
"tissue_stroma": 0.9274340164078094,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_006.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6231948919918845
},
"micro": {
"recall": 0.8488549618320611,
"f1_score": 0.8832406671961874,
"precision": 0.9205298013245033
},
"nuclei_other": {
"FN": 5,
"FP": 0,
"TP": 1,
"recall": 0.16666666666666666,
"f1_score": 0.2857142857142857,
"precision": 1.0
},
"nuclei_tumor": {
"FN": 79,
"FP": 39,
"TP": 529,
"recall": 0.8700657894736842,
"f1_score": 0.8996598639455782,
"precision": 0.9313380281690141
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 9,
"TP": 26,
"recall": 0.6341463414634146,
"f1_score": 0.6842105263157895,
"precision": 0.7428571428571429
}
},
"tissue_metrics": {
"average_dice": 1.0,
"tissue_tumor": 1.0,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_007.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.41500744954625485
},
"micro": {
"recall": 0.8521303258145363,
"f1_score": 0.8695652173913043,
"precision": 0.8877284595300261
},
"nuclei_other": {
"FN": 3,
"FP": 7,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_tumor": {
"FN": 41,
"FP": 36,
"TP": 336,
"recall": 0.8912466843501327,
"f1_score": 0.897196261682243,
"precision": 0.9032258064516129
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 0,
"TP": 4,
"recall": 0.21052631578947367,
"f1_score": 0.34782608695652173,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.7999481103325552,
"tissue_tumor": 0.9997405332804237,
"tissue_stroma": 1.838235260326558e-08,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_008.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.633349194948607
},
"micro": {
"recall": 0.6842105263157895,
"f1_score": 0.7134146341463413,
"precision": 0.7452229299363057
},
"nuclei_other": {
"FN": 80,
"FP": 19,
"TP": 37,
"recall": 0.3162393162393162,
"f1_score": 0.42774566473988435,
"precision": 0.6607142857142857
},
"nuclei_tumor": {
"FN": 77,
"FP": 99,
"TP": 306,
"recall": 0.7989556135770235,
"f1_score": 0.7766497461928933,
"precision": 0.7555555555555555
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 2,
"TP": 8,
"recall": 0.6153846153846154,
"f1_score": 0.6956521739130435,
"precision": 0.8
}
},
"tissue_metrics": {
"average_dice": 0.6502602424655984,
"tissue_tumor": 0.9135525809468316,
"tissue_stroma": 0.6686601436731814,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.6690884514760969,
"tissue_blood_vessel": 3.6231882745221644e-08
}
},
{
"filename": "final_test_set_metastatic_roi_009.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6160891689919084
},
"micro": {
"recall": 0.7858880778588808,
"f1_score": 0.7745803357314149,
"precision": 0.7635933806146572
},
"nuclei_other": {
"FN": 4,
"FP": 25,
"TP": 5,
"recall": 0.5555555555555556,
"f1_score": 0.2564102564102564,
"precision": 0.16666666666666666
},
"nuclei_tumor": {
"FN": 38,
"FP": 61,
"TP": 210,
"recall": 0.8467741935483871,
"f1_score": 0.8092485549132948,
"precision": 0.7749077490774908
},
"nuclei_lymphocyte": {
"FN": 46,
"FP": 14,
"TP": 108,
"recall": 0.7012987012987013,
"f1_score": 0.7826086956521738,
"precision": 0.8852459016393442
}
},
"tissue_metrics": {
"average_dice": 0.6112226552368325,
"tissue_tumor": 0.9325206576504285,
"tissue_stroma": 0.12359261197205414,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 6.561679746970606e-09
}
},
{
"filename": "final_test_set_metastatic_roi_010.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.48413630424946746
},
"micro": {
"recall": 0.8110599078341014,
"f1_score": 0.7668845315904139,
"precision": 0.7272727272727273
},
"nuclei_other": {
"FN": 5,
"FP": 12,
"TP": 1,
"recall": 0.16666666666666666,
"f1_score": 0.10526315789473684,
"precision": 0.07692307692307693
},
"nuclei_tumor": {
"FN": 32,
"FP": 42,
"TP": 166,
"recall": 0.8383838383838383,
"f1_score": 0.8177339901477833,
"precision": 0.7980769230769231
},
"nuclei_lymphocyte": {
"FN": 4,
"FP": 12,
"TP": 9,
"recall": 0.6923076923076923,
"f1_score": 0.5294117647058824,
"precision": 0.42857142857142855
}
},
"tissue_metrics": {
"average_dice": 0.6173654654063149,
"tissue_tumor": 0.9742593568379699,
"tissue_stroma": 7.990028443862857e-11,
"tissue_necrosis": 0.11256797011370383,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_011.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6312397984529131
},
"micro": {
"recall": 0.7268518518518519,
"f1_score": 0.7319347319347319,
"precision": 0.7370892018779343
},
"nuclei_other": {
"FN": 11,
"FP": 25,
"TP": 12,
"recall": 0.5217391304347826,
"f1_score": 0.4,
"precision": 0.32432432432432434
},
"nuclei_tumor": {
"FN": 32,
"FP": 28,
"TP": 124,
"recall": 0.7948717948717948,
"f1_score": 0.8051948051948051,
"precision": 0.8157894736842105
},
"nuclei_lymphocyte": {
"FN": 16,
"FP": 3,
"TP": 21,
"recall": 0.5675675675675675,
"f1_score": 0.6885245901639344,
"precision": 0.875
}
},
"tissue_metrics": {
"average_dice": 0.8935369491155228,
"tissue_tumor": 0.9222409175006657,
"tissue_stroma": 0.5454438280769488,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_012.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6126577913346504
},
"micro": {
"recall": 0.6361788617886179,
"f1_score": 0.6849015317286652,
"precision": 0.7417061611374408
},
"nuclei_other": {
"FN": 5,
"FP": 82,
"TP": 27,
"recall": 0.84375,
"f1_score": 0.3829787234042553,
"precision": 0.24770642201834864
},
"nuclei_tumor": {
"FN": 77,
"FP": 22,
"TP": 101,
"recall": 0.5674157303370787,
"f1_score": 0.6710963455149502,
"precision": 0.8211382113821138
},
"nuclei_lymphocyte": {
"FN": 97,
"FP": 5,
"TP": 185,
"recall": 0.6560283687943262,
"f1_score": 0.7838983050847458,
"precision": 0.9736842105263158
}
},
"tissue_metrics": {
"average_dice": 0.7854008382241752,
"tissue_tumor": 0.97601269209489,
"tissue_stroma": 0.9509914986067337,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 4.19252054159294e-10
}
},
{
"filename": "final_test_set_metastatic_roi_013.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4456309353009497
},
"micro": {
"recall": 0.3807763401109057,
"f1_score": 0.4043179587831207,
"precision": 0.4309623430962343
},
"nuclei_other": {
"FN": 291,
"FP": 19,
"TP": 83,
"recall": 0.22192513368983957,
"f1_score": 0.34873949579831937,
"precision": 0.8137254901960784
},
"nuclei_tumor": {
"FN": 12,
"FP": 232,
"TP": 88,
"recall": 0.88,
"f1_score": 0.41904761904761906,
"precision": 0.275
},
"nuclei_lymphocyte": {
"FN": 32,
"FP": 21,
"TP": 35,
"recall": 0.5223880597014925,
"f1_score": 0.5691056910569106,
"precision": 0.625
}
},
"tissue_metrics": {
"average_dice": 0.7539761720475011,
"tissue_tumor": 0.8457883507565539,
"tissue_stroma": 0.9240924982701895,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.1210762206157376e-08
}
},
{
"filename": "final_test_set_metastatic_roi_014.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7668413322218252
},
"micro": {
"recall": 0.8333333333333334,
"f1_score": 0.8347245409015025,
"precision": 0.8361204013377926
},
"nuclei_other": {
"FN": 10,
"FP": 22,
"TP": 20,
"recall": 0.6666666666666666,
"f1_score": 0.5555555555555556,
"precision": 0.47619047619047616
},
"nuclei_tumor": {
"FN": 33,
"FP": 6,
"TP": 136,
"recall": 0.8047337278106509,
"f1_score": 0.8745980707395498,
"precision": 0.9577464788732394
},
"nuclei_lymphocyte": {
"FN": 7,
"FP": 21,
"TP": 94,
"recall": 0.9306930693069307,
"f1_score": 0.8703703703703703,
"precision": 0.8173913043478261
}
},
"tissue_metrics": {
"average_dice": 0.9198713487631707,
"tissue_tumor": 0.9072118630610627,
"tissue_stroma": 0.6921448807547902,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_015.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6641269841269841
},
"micro": {
"recall": 0.7933130699088146,
"f1_score": 0.8043143297380586,
"precision": 0.815625
},
"nuclei_other": {
"FN": 4,
"FP": 31,
"TP": 7,
"recall": 0.6363636363636364,
"f1_score": 0.2857142857142857,
"precision": 0.18421052631578946
},
"nuclei_tumor": {
"FN": 55,
"FP": 17,
"TP": 189,
"recall": 0.7745901639344263,
"f1_score": 0.8400000000000001,
"precision": 0.9174757281553398
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 11,
"TP": 65,
"recall": 0.8783783783783784,
"f1_score": 0.8666666666666667,
"precision": 0.8552631578947368
}
},
"tissue_metrics": {
"average_dice": 0.9393647585860212,
"tissue_tumor": 0.9519615470264619,
"tissue_stroma": 0.7448622459036439,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_016.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5419108542127867
},
"micro": {
"recall": 0.7606490872210954,
"f1_score": 0.7653061224489797,
"precision": 0.7700205338809035
},
"nuclei_other": {
"FN": 45,
"FP": 7,
"TP": 5,
"recall": 0.1,
"f1_score": 0.16129032258064516,
"precision": 0.4166666666666667
},
"nuclei_tumor": {
"FN": 70,
"FP": 85,
"TP": 349,
"recall": 0.8329355608591885,
"f1_score": 0.8182883939038686,
"precision": 0.804147465437788
},
"nuclei_lymphocyte": {
"FN": 3,
"FP": 20,
"TP": 21,
"recall": 0.875,
"f1_score": 0.6461538461538462,
"precision": 0.5121951219512195
}
},
"tissue_metrics": {
"average_dice": 0.6992099740547679,
"tissue_tumor": 0.9472811886527358,
"tissue_stroma": 0.5487686807029991,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 9.181050303726543e-10
}
},
{
"filename": "final_test_set_metastatic_roi_017.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5113992888517046
},
"micro": {
"recall": 0.8181818181818182,
"f1_score": 0.7816377171215881,
"precision": 0.7482185273159145
},
"nuclei_other": {
"FN": 4,
"FP": 21,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_tumor": {
"FN": 56,
"FP": 67,
"TP": 280,
"recall": 0.8333333333333334,
"f1_score": 0.8199121522693997,
"precision": 0.8069164265129684
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 18,
"TP": 35,
"recall": 0.7777777777777778,
"f1_score": 0.7142857142857142,
"precision": 0.660377358490566
}
},
"tissue_metrics": {
"average_dice": 0.5923953095426157,
"tissue_tumor": 0.961976546429191,
"tissue_stroma": 1.470069387058969e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.136880398889404e-09,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_018.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7305159928596642
},
"micro": {
"recall": 0.7178362573099415,
"f1_score": 0.7799841143764892,
"precision": 0.8539130434782609
},
"nuclei_other": {
"FN": 36,
"FP": 27,
"TP": 41,
"recall": 0.5324675324675324,
"f1_score": 0.5655172413793104,
"precision": 0.6029411764705882
},
"nuclei_tumor": {
"FN": 109,
"FP": 35,
"TP": 274,
"recall": 0.7154046997389034,
"f1_score": 0.791907514450867,
"precision": 0.8867313915857605
},
"nuclei_lymphocyte": {
"FN": 48,
"FP": 22,
"TP": 176,
"recall": 0.7857142857142857,
"f1_score": 0.8341232227488152,
"precision": 0.8888888888888888
}
},
"tissue_metrics": {
"average_dice": 0.5644906177852811,
"tissue_tumor": 0.9527960187287756,
"tissue_stroma": 0.8696562360319355,
"tissue_necrosis": 8.333326388894677e-07,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 8.330556474233126e-10
}
},
{
"filename": "final_test_set_metastatic_roi_019.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.681693692273922
},
"micro": {
"recall": 0.7796052631578947,
"f1_score": 0.7645161290322581,
"precision": 0.75
},
"nuclei_other": {
"FN": 13,
"FP": 34,
"TP": 16,
"recall": 0.5517241379310345,
"f1_score": 0.4050632911392405,
"precision": 0.32
},
"nuclei_tumor": {
"FN": 40,
"FP": 26,
"TP": 140,
"recall": 0.7777777777777778,
"f1_score": 0.8092485549132947,
"precision": 0.8433734939759037
},
"nuclei_lymphocyte": {
"FN": 14,
"FP": 19,
"TP": 81,
"recall": 0.8526315789473684,
"f1_score": 0.8307692307692308,
"precision": 0.81
}
},
"tissue_metrics": {
"average_dice": 0.3662286230580941,
"tissue_tumor": 0.8079092596290814,
"tissue_stroma": 0.023233787366870706,
"tissue_necrosis": 7.26955509794304e-10,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 6.756756300219169e-08
}
},
{
"filename": "final_test_set_metastatic_roi_020.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6079444172419199
},
"micro": {
"recall": 0.630173564753004,
"f1_score": 0.7261538461538463,
"precision": 0.8566243194192378
},
"nuclei_other": {
"FN": 12,
"FP": 37,
"TP": 11,
"recall": 0.4782608695652174,
"f1_score": 0.3098591549295775,
"precision": 0.22916666666666666
},
"nuclei_tumor": {
"FN": 60,
"FP": 32,
"TP": 161,
"recall": 0.7285067873303167,
"f1_score": 0.7777777777777778,
"precision": 0.8341968911917098
},
"nuclei_lymphocyte": {
"FN": 205,
"FP": 10,
"TP": 300,
"recall": 0.594059405940594,
"f1_score": 0.7361963190184048,
"precision": 0.967741935483871
}
},
"tissue_metrics": {
"average_dice": 0.8853962995570377,
"tissue_tumor": 0.9434420736971106,
"tissue_stroma": 0.9174454721395692,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5660939519485083
}
},
{
"filename": "final_test_set_metastatic_roi_021.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7014536464897683
},
"micro": {
"recall": 0.7410256410256411,
"f1_score": 0.7545691906005222,
"precision": 0.7686170212765957
},
"nuclei_other": {
"FN": 32,
"FP": 17,
"TP": 30,
"recall": 0.4838709677419355,
"f1_score": 0.5504587155963303,
"precision": 0.6382978723404256
},
"nuclei_tumor": {
"FN": 46,
"FP": 48,
"TP": 191,
"recall": 0.8059071729957806,
"f1_score": 0.8025210084033614,
"precision": 0.799163179916318
},
"nuclei_lymphocyte": {
"FN": 23,
"FP": 22,
"TP": 68,
"recall": 0.7472527472527473,
"f1_score": 0.7513812154696132,
"precision": 0.7555555555555555
}
},
"tissue_metrics": {
"average_dice": 0.7323369021893249,
"tissue_tumor": 0.933007304042797,
"tissue_stroma": 0.7286771235705013,
"tissue_necrosis": 1.0,
"tissue_epidermis": 8.333332638888948e-08,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_022.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5336971208814053
},
"micro": {
"recall": 0.7425742574257426,
"f1_score": 0.8241758241758241,
"precision": 0.9259259259259259
},
"nuclei_other": {
"FN": 2,
"FP": 9,
"TP": 2,
"recall": 0.5,
"f1_score": 0.26666666666666666,
"precision": 0.18181818181818182
},
"nuclei_tumor": {
"FN": 154,
"FP": 23,
"TP": 446,
"recall": 0.7433333333333333,
"f1_score": 0.8344246959775491,
"precision": 0.9509594882729211
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 4,
"TP": 2,
"recall": 1.0,
"f1_score": 0.5,
"precision": 0.3333333333333333
}
},
"tissue_metrics": {
"average_dice": 1.0,
"tissue_tumor": 1.0,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_023.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6159309994926433
},
"micro": {
"recall": 0.7768817204301075,
"f1_score": 0.828673835125448,
"precision": 0.8878648233486943
},
"nuclei_other": {
"FN": 7,
"FP": 8,
"TP": 6,
"recall": 0.46153846153846156,
"f1_score": 0.4444444444444445,
"precision": 0.42857142857142855
},
"nuclei_tumor": {
"FN": 146,
"FP": 54,
"TP": 557,
"recall": 0.7923186344238976,
"f1_score": 0.84779299847793,
"precision": 0.911620294599018
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 11,
"TP": 15,
"recall": 0.5357142857142857,
"f1_score": 0.5555555555555555,
"precision": 0.5769230769230769
}
},
"tissue_metrics": {
"average_dice": 0.9173227908292881,
"tissue_tumor": 0.9740859048262817,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6125280493201593
}
},
{
"filename": "final_test_set_metastatic_roi_024.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7273042792727833
},
"micro": {
"recall": 0.7404092071611253,
"f1_score": 0.7593442622950819,
"precision": 0.7792732166890982
},
"nuclei_other": {
"FN": 78,
"FP": 74,
"TP": 106,
"recall": 0.5760869565217391,
"f1_score": 0.5824175824175823,
"precision": 0.5888888888888889
},
"nuclei_tumor": {
"FN": 28,
"FP": 65,
"TP": 144,
"recall": 0.8372093023255814,
"f1_score": 0.7559055118110237,
"precision": 0.6889952153110048
},
"nuclei_lymphocyte": {
"FN": 97,
"FP": 25,
"TP": 329,
"recall": 0.7723004694835681,
"f1_score": 0.8435897435897437,
"precision": 0.9293785310734464
}
},
"tissue_metrics": {
"average_dice": 0.8691711858080803,
"tissue_tumor": 0.9189671930111625,
"tissue_stroma": 0.9309990287796863,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.4958897072495526
}
},
{
"filename": "final_test_set_metastatic_roi_025.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7621719094369865
},
"micro": {
"recall": 0.7848699763593381,
"f1_score": 0.7895362663495838,
"precision": 0.7942583732057417
},
"nuclei_other": {
"FN": 20,
"FP": 37,
"TP": 52,
"recall": 0.7222222222222222,
"f1_score": 0.6459627329192547,
"precision": 0.5842696629213483
},
"nuclei_tumor": {
"FN": 53,
"FP": 13,
"TP": 121,
"recall": 0.6954022988505747,
"f1_score": 0.7857142857142858,
"precision": 0.9029850746268657
},
"nuclei_lymphocyte": {
"FN": 18,
"FP": 36,
"TP": 159,
"recall": 0.8983050847457628,
"f1_score": 0.8548387096774194,
"precision": 0.8153846153846154
}
},
"tissue_metrics": {
"average_dice": 0.7170716590604927,
"tissue_tumor": 0.8803451526954881,
"tissue_stroma": 0.7050131421199782,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 4.869971751792163e-10
}
},
{
"filename": "final_test_set_metastatic_roi_026.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6542618678659785
},
"micro": {
"recall": 0.6875,
"f1_score": 0.6935201401050788,
"precision": 0.6996466431095406
},
"nuclei_other": {
"FN": 16,
"FP": 56,
"TP": 25,
"recall": 0.6097560975609756,
"f1_score": 0.4098360655737705,
"precision": 0.30864197530864196
},
"nuclei_tumor": {
"FN": 47,
"FP": 28,
"TP": 120,
"recall": 0.718562874251497,
"f1_score": 0.761904761904762,
"precision": 0.8108108108108109
},
"nuclei_lymphocyte": {
"FN": 27,
"FP": 1,
"TP": 53,
"recall": 0.6625,
"f1_score": 0.7910447761194029,
"precision": 0.9814814814814815
}
},
"tissue_metrics": {
"average_dice": 0.4010221215184967,
"tissue_tumor": 0.9678414468597107,
"tissue_stroma": 0.03726914901270419,
"tissue_necrosis": 1.141552498384104e-08,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.0454379330474365e-10
}
},
{
"filename": "final_test_set_metastatic_roi_027.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7246027868890593
},
"micro": {
"recall": 0.8885448916408669,
"f1_score": 0.8763358778625954,
"precision": 0.8644578313253012
},
"nuclei_other": {
"FN": 2,
"FP": 6,
"TP": 3,
"recall": 0.6,
"f1_score": 0.42857142857142855,
"precision": 0.3333333333333333
},
"nuclei_tumor": {
"FN": 31,
"FP": 29,
"TP": 246,
"recall": 0.8880866425992779,
"f1_score": 0.8913043478260869,
"precision": 0.8945454545454545
},
"nuclei_lymphocyte": {
"FN": 3,
"FP": 10,
"TP": 38,
"recall": 0.926829268292683,
"f1_score": 0.8539325842696629,
"precision": 0.7916666666666666
}
},
"tissue_metrics": {
"average_dice": 0.8866561421232195,
"tissue_tumor": 0.9451616547588131,
"tissue_stroma": 0.4881190558572849,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_028.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.600250626566416
},
"micro": {
"recall": 0.9621212121212122,
"f1_score": 0.9390018484288356,
"precision": 0.9169675090252708
},
"nuclei_other": {
"FN": 0,
"FP": 1,
"TP": 3,
"recall": 1.0,
"f1_score": 0.8571428571428571,
"precision": 0.75
},
"nuclei_tumor": {
"FN": 10,
"FP": 20,
"TP": 251,
"recall": 0.9616858237547893,
"f1_score": 0.943609022556391,
"precision": 0.9261992619926199
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.59519520032595,
"tissue_tumor": 0.9759759994376042,
"tissue_stroma": 2.267368038666024e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.965408801168615e-09
}
},
{
"filename": "final_test_set_metastatic_roi_029.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5691787410058494
},
"micro": {
"recall": 0.8611898016997167,
"f1_score": 0.824966078697422,
"precision": 0.7916666666666666
},
"nuclei_other": {
"FN": 26,
"FP": 15,
"TP": 5,
"recall": 0.16129032258064516,
"f1_score": 0.19607843137254902,
"precision": 0.25
},
"nuclei_tumor": {
"FN": 22,
"FP": 49,
"TP": 285,
"recall": 0.9283387622149837,
"f1_score": 0.8892355694227768,
"precision": 0.8532934131736527
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 16,
"TP": 14,
"recall": 0.9333333333333333,
"f1_score": 0.6222222222222223,
"precision": 0.4666666666666667
}
},
"tissue_metrics": {
"average_dice": 1.0,
"tissue_tumor": 1.0,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_030.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7909626496602709
},
"micro": {
"recall": 0.8396946564885496,
"f1_score": 0.8721506442021804,
"precision": 0.9072164948453608
},
"nuclei_other": {
"FN": 15,
"FP": 16,
"TP": 25,
"recall": 0.625,
"f1_score": 0.6172839506172839,
"precision": 0.6097560975609756
},
"nuclei_tumor": {
"FN": 51,
"FP": 10,
"TP": 315,
"recall": 0.860655737704918,
"f1_score": 0.9117221418234442,
"precision": 0.9692307692307692
},
"nuclei_lymphocyte": {
"FN": 18,
"FP": 19,
"TP": 100,
"recall": 0.847457627118644,
"f1_score": 0.8438818565400844,
"precision": 0.8403361344537815
}
},
"tissue_metrics": {
"average_dice": 0.8175548035036355,
"tissue_tumor": 0.9835867437496069,
"tissue_stroma": 0.9258863761180645,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.17830089765050658
}
},
{
"filename": "final_test_set_metastatic_roi_031.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6814686822239291
},
"micro": {
"recall": 0.7678391959798995,
"f1_score": 0.7900723888314374,
"precision": 0.8136315228966986
},
"nuclei_other": {
"FN": 79,
"FP": 42,
"TP": 37,
"recall": 0.31896551724137934,
"f1_score": 0.3794871794871795,
"precision": 0.46835443037974683
},
"nuclei_tumor": {
"FN": 47,
"FP": 85,
"TP": 287,
"recall": 0.8592814371257484,
"f1_score": 0.8130311614730877,
"precision": 0.771505376344086
},
"nuclei_lymphocyte": {
"FN": 105,
"FP": 48,
"TP": 440,
"recall": 0.8073394495412844,
"f1_score": 0.85188770571152,
"precision": 0.9016393442622951
}
},
"tissue_metrics": {
"average_dice": 0.5768876251191958,
"tissue_tumor": 0.9465243924687101,
"tissue_stroma": 0.9379135064116263,
"tissue_necrosis": 2.083332899305646e-07,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.838235260326558e-08
}
},
{
"filename": "final_test_set_metastatic_roi_032.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7092380556829373
},
"micro": {
"recall": 0.7601957585644372,
"f1_score": 0.7891617273497037,
"precision": 0.8204225352112676
},
"nuclei_other": {
"FN": 12,
"FP": 57,
"TP": 31,
"recall": 0.7209302325581395,
"f1_score": 0.47328244274809167,
"precision": 0.3522727272727273
},
"nuclei_tumor": {
"FN": 59,
"FP": 25,
"TP": 187,
"recall": 0.7601626016260162,
"f1_score": 0.8165938864628821,
"precision": 0.8820754716981132
},
"nuclei_lymphocyte": {
"FN": 76,
"FP": 20,
"TP": 248,
"recall": 0.7654320987654321,
"f1_score": 0.8378378378378379,
"precision": 0.9253731343283582
}
},
"tissue_metrics": {
"average_dice": 0.7468663219366126,
"tissue_tumor": 0.9417087488868817,
"tissue_stroma": 0.7926228605834154,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.1276595740153916e-10
}
},
{
"filename": "final_test_set_metastatic_roi_033.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6483897105382751
},
"micro": {
"recall": 0.862453531598513,
"f1_score": 0.8940269749518305,
"precision": 0.928
},
"nuclei_other": {
"FN": 12,
"FP": 4,
"TP": 5,
"recall": 0.29411764705882354,
"f1_score": 0.3846153846153846,
"precision": 0.5555555555555556
},
"nuclei_tumor": {
"FN": 54,
"FP": 29,
"TP": 449,
"recall": 0.8926441351888668,
"f1_score": 0.9153924566768603,
"precision": 0.9393305439330544
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 3,
"TP": 10,
"recall": 0.5555555555555556,
"f1_score": 0.6451612903225806,
"precision": 0.7692307692307693
}
},
"tissue_metrics": {
"average_dice": 0.9029167767086757,
"tissue_tumor": 0.9925632789562511,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5220206045871267
}
},
{
"filename": "final_test_set_metastatic_roi_034.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4282287095955916
},
"micro": {
"recall": 0.7157142857142857,
"f1_score": 0.7511244377811095,
"precision": 0.7902208201892744
},
"nuclei_other": {
"FN": 8,
"FP": 52,
"TP": 6,
"recall": 0.42857142857142855,
"f1_score": 0.16666666666666663,
"precision": 0.10344827586206896
},
"nuclei_tumor": {
"FN": 188,
"FP": 49,
"TP": 487,
"recall": 0.7214814814814815,
"f1_score": 0.8042939719240297,
"precision": 0.9085820895522388
},
"nuclei_lymphocyte": {
"FN": 3,
"FP": 32,
"TP": 8,
"recall": 0.7272727272727273,
"f1_score": 0.3137254901960785,
"precision": 0.2
}
},
"tissue_metrics": {
"average_dice": 0.8510618241603687,
"tissue_tumor": 0.9418439746564815,
"tissue_stroma": 1.0,
"tissue_necrosis": 0.5507915910069391,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.762673555138423
}
},
{
"filename": "final_test_set_metastatic_roi_035.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6507586586124033
},
"micro": {
"recall": 0.7657142857142857,
"f1_score": 0.7272727272727272,
"precision": 0.6925064599483204
},
"nuclei_other": {
"FN": 19,
"FP": 60,
"TP": 44,
"recall": 0.6984126984126984,
"f1_score": 0.5269461077844312,
"precision": 0.4230769230769231
},
"nuclei_tumor": {
"FN": 34,
"FP": 56,
"TP": 199,
"recall": 0.8540772532188842,
"f1_score": 0.8155737704918034,
"precision": 0.7803921568627451
},
"nuclei_lymphocyte": {
"FN": 29,
"FP": 3,
"TP": 25,
"recall": 0.46296296296296297,
"f1_score": 0.6097560975609756,
"precision": 0.8928571428571429
}
},
"tissue_metrics": {
"average_dice": 0.8940061910241148,
"tissue_tumor": 0.8591180549024683,
"tissue_stroma": 0.6109129002181054,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_036.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5744853686431695
},
"micro": {
"recall": 0.7473958333333334,
"f1_score": 0.7425614489003881,
"precision": 0.7377892030848329
},
"nuclei_other": {
"FN": 9,
"FP": 54,
"TP": 4,
"recall": 0.3076923076923077,
"f1_score": 0.11267605633802817,
"precision": 0.06896551724137931
},
"nuclei_tumor": {
"FN": 51,
"FP": 22,
"TP": 132,
"recall": 0.7213114754098361,
"f1_score": 0.7833827893175075,
"precision": 0.8571428571428571
},
"nuclei_lymphocyte": {
"FN": 37,
"FP": 26,
"TP": 151,
"recall": 0.8031914893617021,
"f1_score": 0.8273972602739726,
"precision": 0.8531073446327684
}
},
"tissue_metrics": {
"average_dice": 0.5718165832126706,
"tissue_tumor": 0.9722636643995609,
"tissue_stroma": 0.8868192096918761,
"tissue_necrosis": 3.205128102399741e-08,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 9.920634822215925e-09
}
},
{
"filename": "final_test_set_metastatic_roi_037.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4109915611814346
},
"micro": {
"recall": 0.889739663093415,
"f1_score": 0.8945342571208621,
"precision": 0.8993808049535603
},
"nuclei_other": {
"FN": 9,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_tumor": {
"FN": 57,
"FP": 53,
"TP": 577,
"recall": 0.9100946372239748,
"f1_score": 0.9129746835443038,
"precision": 0.9158730158730158
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 11,
"TP": 4,
"recall": 0.4,
"f1_score": 0.32,
"precision": 0.26666666666666666
}
},
"tissue_metrics": {
"average_dice": 0.6403291222852217,
"tissue_tumor": 0.995006903407016,
"tissue_stroma": 5.854800902489457e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.20663870216429084
}
},
{
"filename": "final_test_set_metastatic_roi_038.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.532486388384755
},
"micro": {
"recall": 0.8351177730192719,
"f1_score": 0.8459869848156181,
"precision": 0.8571428571428571
},
"nuclei_other": {
"FN": 20,
"FP": 4,
"TP": 7,
"recall": 0.25925925925925924,
"f1_score": 0.368421052631579,
"precision": 0.6363636363636364
},
"nuclei_tumor": {
"FN": 46,
"FP": 53,
"TP": 378,
"recall": 0.8915094339622641,
"f1_score": 0.8842105263157894,
"precision": 0.877030162412993
},
"nuclei_lymphocyte": {
"FN": 11,
"FP": 8,
"TP": 5,
"recall": 0.3125,
"f1_score": 0.3448275862068966,
"precision": 0.38461538461538464
}
},
"tissue_metrics": {
"average_dice": 1.0,
"tissue_tumor": 1.0,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_039.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5474044451267832
},
"micro": {
"recall": 0.6116322701688556,
"f1_score": 0.6215443279313632,
"precision": 0.6317829457364341
},
"nuclei_other": {
"FN": 149,
"FP": 8,
"TP": 14,
"recall": 0.08588957055214724,
"f1_score": 0.15135135135135136,
"precision": 0.6363636363636364
},
"nuclei_tumor": {
"FN": 28,
"FP": 159,
"TP": 197,
"recall": 0.8755555555555555,
"f1_score": 0.6781411359724612,
"precision": 0.5533707865168539
},
"nuclei_lymphocyte": {
"FN": 30,
"FP": 23,
"TP": 115,
"recall": 0.7931034482758621,
"f1_score": 0.812720848056537,
"precision": 0.8333333333333334
}
},
"tissue_metrics": {
"average_dice": 0.684967235900061,
"tissue_tumor": 0.6869523178980047,
"tissue_stroma": 0.7378838563939673,
"tissue_necrosis": 5.208333306206598e-09,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_040.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6910206596138537
},
"micro": {
"recall": 0.731006160164271,
"f1_score": 0.7772925764192139,
"precision": 0.8298368298368298
},
"nuclei_other": {
"FN": 28,
"FP": 13,
"TP": 21,
"recall": 0.42857142857142855,
"f1_score": 0.5060240963855421,
"precision": 0.6176470588235294
},
"nuclei_tumor": {
"FN": 96,
"FP": 37,
"TP": 289,
"recall": 0.7506493506493507,
"f1_score": 0.8129395218002814,
"precision": 0.8865030674846626
},
"nuclei_lymphocyte": {
"FN": 7,
"FP": 23,
"TP": 46,
"recall": 0.8679245283018868,
"f1_score": 0.7540983606557377,
"precision": 0.6666666666666666
}
},
"tissue_metrics": {
"average_dice": 0.8842509477045335,
"tissue_tumor": 0.9811556580125111,
"tissue_stroma": 0.6219087470093573,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.8181903335007985
}
},
{
"filename": "final_test_set_metastatic_roi_041.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7325395716271946
},
"micro": {
"recall": 0.7786885245901639,
"f1_score": 0.7734056987788331,
"precision": 0.7681940700808625
},
"nuclei_other": {
"FN": 15,
"FP": 24,
"TP": 37,
"recall": 0.7115384615384616,
"f1_score": 0.654867256637168,
"precision": 0.6065573770491803
},
"nuclei_tumor": {
"FN": 56,
"FP": 14,
"TP": 178,
"recall": 0.7606837606837606,
"f1_score": 0.8356807511737089,
"precision": 0.9270833333333334
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 48,
"TP": 70,
"recall": 0.875,
"f1_score": 0.707070707070707,
"precision": 0.5932203389830508
}
},
"tissue_metrics": {
"average_dice": 0.8495816462980008,
"tissue_tumor": 0.9242922243928589,
"tissue_stroma": 0.6731350692905177,
"tissue_necrosis": 0.6504809378066274,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_042.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6642885791251598
},
"micro": {
"recall": 0.6505376344086021,
"f1_score": 0.6678932842686293,
"precision": 0.6862003780718336
},
"nuclei_other": {
"FN": 104,
"FP": 39,
"TP": 109,
"recall": 0.5117370892018779,
"f1_score": 0.6038781163434903,
"precision": 0.7364864864864865
},
"nuclei_tumor": {
"FN": 9,
"FP": 109,
"TP": 105,
"recall": 0.9210526315789473,
"f1_score": 0.6402439024390244,
"precision": 0.49065420560747663
},
"nuclei_lymphocyte": {
"FN": 82,
"FP": 18,
"TP": 149,
"recall": 0.645021645021645,
"f1_score": 0.7487437185929648,
"precision": 0.8922155688622755
}
},
"tissue_metrics": {
"average_dice": 0.5350942690479159,
"tissue_tumor": 0.43511137333172406,
"tissue_stroma": 0.02181430422559616,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.21854566768225928
}
},
{
"filename": "final_test_set_metastatic_roi_043.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5884360849878091
},
"micro": {
"recall": 0.7612456747404844,
"f1_score": 0.7508532423208192,
"precision": 0.7407407407407407
},
"nuclei_other": {
"FN": 7,
"FP": 44,
"TP": 18,
"recall": 0.72,
"f1_score": 0.4137931034482759,
"precision": 0.2903225806451613
},
"nuclei_tumor": {
"FN": 61,
"FP": 27,
"TP": 198,
"recall": 0.7644787644787645,
"f1_score": 0.8181818181818181,
"precision": 0.88
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 6,
"TP": 4,
"recall": 0.8,
"f1_score": 0.5333333333333333,
"precision": 0.4
}
},
"tissue_metrics": {
"average_dice": 0.8528526276084409,
"tissue_tumor": 0.9603012567489865,
"tissue_stroma": 0.3039618812932179,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_044.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5712473400413979
},
"micro": {
"recall": 0.8582677165354331,
"f1_score": 0.8676616915422886,
"precision": 0.8772635814889336
},
"nuclei_other": {
"FN": 16,
"FP": 5,
"TP": 1,
"recall": 0.058823529411764705,
"f1_score": 0.08695652173913045,
"precision": 0.16666666666666666
},
"nuclei_tumor": {
"FN": 52,
"FP": 43,
"TP": 412,
"recall": 0.8879310344827587,
"f1_score": 0.8966267682263329,
"precision": 0.9054945054945055
},
"nuclei_lymphocyte": {
"FN": 4,
"FP": 13,
"TP": 23,
"recall": 0.8518518518518519,
"f1_score": 0.7301587301587301,
"precision": 0.6388888888888888
}
},
"tissue_metrics": {
"average_dice": 0.7920420447470592,
"tissue_tumor": 0.9602102236106886,
"tissue_stroma": 1.2460748640225696e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_045.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6101010101010101
},
"micro": {
"recall": 0.782608695652174,
"f1_score": 0.78,
"precision": 0.7774086378737541
},
"nuclei_other": {
"FN": 2,
"FP": 31,
"TP": 6,
"recall": 0.75,
"f1_score": 0.26666666666666666,
"precision": 0.16216216216216217
},
"nuclei_tumor": {
"FN": 49,
"FP": 96,
"TP": 340,
"recall": 0.8740359897172236,
"f1_score": 0.8242424242424242,
"precision": 0.7798165137614679
},
"nuclei_lymphocyte": {
"FN": 79,
"FP": 7,
"TP": 122,
"recall": 0.6069651741293532,
"f1_score": 0.7393939393939395,
"precision": 0.9457364341085271
}
},
"tissue_metrics": {
"average_dice": 0.5317414676730967,
"tissue_tumor": 0.9844761462255257,
"tissue_stroma": 0.15381942482549407,
"tissue_necrosis": 8.805917568857065e-10,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5204117664338724
}
},
{
"filename": "final_test_set_metastatic_roi_046.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3137093627745616
},
"micro": {
"recall": 0.1483050847457627,
"f1_score": 0.1799485861182519,
"precision": 0.22875816993464052
},
"nuclei_other": {
"FN": 198,
"FP": 1,
"TP": 29,
"recall": 0.1277533039647577,
"f1_score": 0.22568093385214005,
"precision": 0.9666666666666667
},
"nuclei_tumor": {
"FN": 2,
"FP": 115,
"TP": 3,
"recall": 0.6,
"f1_score": 0.04878048780487805,
"precision": 0.025423728813559324
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 2,
"TP": 3,
"recall": 0.75,
"f1_score": 0.6666666666666665,
"precision": 0.6
}
},
"tissue_metrics": {
"average_dice": 0.33755039711085516,
"tissue_tumor": 1.0287769488015905e-11,
"tissue_stroma": 0.1373363342435924,
"tissue_necrosis": 0.007602119498661263,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5428135318017343
}
},
{
"filename": "final_test_set_metastatic_roi_047.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3248790678830656
},
"micro": {
"recall": 0.48717948717948717,
"f1_score": 0.4922279792746114,
"precision": 0.4973821989528796
},
"nuclei_other": {
"FN": 188,
"FP": 3,
"TP": 59,
"recall": 0.2388663967611336,
"f1_score": 0.3818770226537217,
"precision": 0.9516129032258065
},
"nuclei_tumor": {
"FN": 12,
"FP": 168,
"TP": 131,
"recall": 0.916083916083916,
"f1_score": 0.5927601809954751,
"precision": 0.43812709030100333
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 21,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.48468955601252184,
"tissue_tumor": 0.4233449627338494,
"tissue_stroma": 2.5701655179988266e-10,
"tissue_necrosis": 0.00010281707174313707,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_001.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.40768872939925577
},
"micro": {
"recall": 0.538860103626943,
"f1_score": 0.5468886941279579,
"precision": 0.5551601423487544
},
"nuclei_other": {
"FN": 152,
"FP": 36,
"TP": 71,
"recall": 0.3183856502242152,
"f1_score": 0.4303030303030303,
"precision": 0.6635514018691588
},
"nuclei_tumor": {
"FN": 0,
"FP": 203,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 115,
"FP": 11,
"TP": 241,
"recall": 0.6769662921348315,
"f1_score": 0.792763157894737,
"precision": 0.9563492063492064
}
},
"tissue_metrics": {
"average_dice": 0.6752604473635556,
"tissue_tumor": 2.813256062487671e-11,
"tissue_stroma": 0.773156588792864,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6031456479967816
}
},
{
"filename": "final_test_set_primary_roi_002.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6458579226745317
},
"micro": {
"recall": 0.6513409961685823,
"f1_score": 0.6563706563706563,
"precision": 0.6614785992217899
},
"nuclei_other": {
"FN": 74,
"FP": 15,
"TP": 100,
"recall": 0.5747126436781609,
"f1_score": 0.6920415224913495,
"precision": 0.8695652173913043
},
"nuclei_tumor": {
"FN": 3,
"FP": 57,
"TP": 35,
"recall": 0.9210526315789473,
"f1_score": 0.5384615384615384,
"precision": 0.3804347826086957
},
"nuclei_lymphocyte": {
"FN": 14,
"FP": 15,
"TP": 35,
"recall": 0.7142857142857143,
"f1_score": 0.7070707070707072,
"precision": 0.7
}
},
"tissue_metrics": {
"average_dice": 0.7636443454472216,
"tissue_tumor": 0.841335758664184,
"tissue_stroma": 0.9768859668951974,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.6767270260282915e-09
}
},
{
"filename": "final_test_set_primary_roi_003.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6306302588371474
},
"micro": {
"recall": 0.6844512195121951,
"f1_score": 0.7010148321623731,
"precision": 0.7184
},
"nuclei_other": {
"FN": 117,
"FP": 63,
"TP": 137,
"recall": 0.5393700787401575,
"f1_score": 0.6035242290748899,
"precision": 0.685
},
"nuclei_tumor": {
"FN": 41,
"FP": 80,
"TP": 44,
"recall": 0.5176470588235295,
"f1_score": 0.4210526315789474,
"precision": 0.3548387096774194
},
"nuclei_lymphocyte": {
"FN": 49,
"FP": 33,
"TP": 268,
"recall": 0.8454258675078864,
"f1_score": 0.8673139158576051,
"precision": 0.8903654485049833
}
},
"tissue_metrics": {
"average_dice": 0.8103203676945174,
"tissue_tumor": 0.687524826772975,
"tissue_stroma": 0.9262935212871436,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.7510405984495336,
"tissue_blood_vessel": 0.6867428919629355
}
},
{
"filename": "final_test_set_primary_roi_004.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5521355161093152
},
"micro": {
"recall": 0.6317016317016317,
"f1_score": 0.6617826617826618,
"precision": 0.6948717948717948
},
"nuclei_other": {
"FN": 37,
"FP": 33,
"TP": 9,
"recall": 0.1956521739130435,
"f1_score": 0.20454545454545456,
"precision": 0.21428571428571427
},
"nuclei_tumor": {
"FN": 101,
"FP": 41,
"TP": 158,
"recall": 0.61003861003861,
"f1_score": 0.6899563318777292,
"precision": 0.7939698492462312
},
"nuclei_lymphocyte": {
"FN": 20,
"FP": 45,
"TP": 104,
"recall": 0.8387096774193549,
"f1_score": 0.7619047619047619,
"precision": 0.697986577181208
}
},
"tissue_metrics": {
"average_dice": 0.39782375499236733,
"tissue_tumor": 0.7935616486093582,
"tissue_stroma": 3.105667221449425e-11,
"tissue_necrosis": 1.0,
"tissue_epidermis": 2.2727267561984644e-07,
"tissue_blood_vessel": 0.19555689904874624
}
},
{
"filename": "final_test_set_primary_roi_005.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7041518396178744
},
"micro": {
"recall": 0.7483731019522777,
"f1_score": 0.7599118942731277,
"precision": 0.7718120805369127
},
"nuclei_other": {
"FN": 11,
"FP": 88,
"TP": 56,
"recall": 0.835820895522388,
"f1_score": 0.5308056872037915,
"precision": 0.3888888888888889
},
"nuclei_tumor": {
"FN": 92,
"FP": 6,
"TP": 259,
"recall": 0.7378917378917379,
"f1_score": 0.8409090909090909,
"precision": 0.9773584905660377
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 8,
"TP": 30,
"recall": 0.6976744186046512,
"f1_score": 0.7407407407407408,
"precision": 0.7894736842105263
}
},
"tissue_metrics": {
"average_dice": 0.8161445199741216,
"tissue_tumor": 0.9561544767210842,
"tissue_stroma": 0.90640777873237,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.2181603444171535
}
},
{
"filename": "final_test_set_primary_roi_006.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6290525968861967
},
"micro": {
"recall": 0.6243996157540826,
"f1_score": 0.6996770721205597,
"precision": 0.795593635250918
},
"nuclei_other": {
"FN": 39,
"FP": 128,
"TP": 69,
"recall": 0.6388888888888888,
"f1_score": 0.45245901639344255,
"precision": 0.350253807106599
},
"nuclei_tumor": {
"FN": 57,
"FP": 24,
"TP": 83,
"recall": 0.5928571428571429,
"f1_score": 0.6720647773279351,
"precision": 0.7757009345794392
},
"nuclei_lymphocyte": {
"FN": 295,
"FP": 15,
"TP": 498,
"recall": 0.6279949558638083,
"f1_score": 0.7626339969372128,
"precision": 0.9707602339181286
}
},
"tissue_metrics": {
"average_dice": 0.8523003131087844,
"tissue_tumor": 0.8883583129237378,
"tissue_stroma": 0.9654565226765202,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.40768672994366445
}
},
{
"filename": "final_test_set_primary_roi_007.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.35392865690065634
},
"micro": {
"recall": 0.3333333333333333,
"f1_score": 0.3576470588235294,
"precision": 0.38578680203045684
},
"nuclei_other": {
"FN": 54,
"FP": 54,
"TP": 132,
"recall": 0.7096774193548387,
"f1_score": 0.7096774193548389,
"precision": 0.7096774193548387
},
"nuclei_tumor": {
"FN": 397,
"FP": 20,
"TP": 87,
"recall": 0.1797520661157025,
"f1_score": 0.29441624365482233,
"precision": 0.8130841121495327
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 289,
"TP": 9,
"recall": 0.6428571428571429,
"f1_score": 0.057692307692307696,
"precision": 0.030201342281879196
}
},
"tissue_metrics": {
"average_dice": 0.6796524858550758,
"tissue_tumor": 0.8441835316601342,
"tissue_stroma": 0.6413221387841859,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.912756758676659,
"tissue_blood_vessel": 1.543996170651104e-10
}
},
{
"filename": "final_test_set_primary_roi_008.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8155984091749907
},
"micro": {
"recall": 0.825925925925926,
"f1_score": 0.8462998102466793,
"precision": 0.867704280155642
},
"nuclei_other": {
"FN": 21,
"FP": 20,
"TP": 59,
"recall": 0.7375,
"f1_score": 0.7421383647798743,
"precision": 0.7468354430379747
},
"nuclei_tumor": {
"FN": 13,
"FP": 5,
"TP": 127,
"recall": 0.9071428571428571,
"f1_score": 0.9338235294117646,
"precision": 0.9621212121212122
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 9,
"TP": 37,
"recall": 0.74,
"f1_score": 0.7708333333333333,
"precision": 0.8043478260869565
}
},
"tissue_metrics": {
"average_dice": 0.6305262719848527,
"tissue_tumor": 0.9745529295687321,
"tissue_stroma": 0.9332448517710296,
"tissue_necrosis": 1.0,
"tissue_epidermis": 8.223684142897335e-09,
"tissue_blood_vessel": 0.24483357036081738
}
},
{
"filename": "final_test_set_primary_roi_009.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7148773335068328
},
"micro": {
"recall": 0.676737160120846,
"f1_score": 0.7032967032967032,
"precision": 0.7320261437908496
},
"nuclei_other": {
"FN": 87,
"FP": 18,
"TP": 102,
"recall": 0.5396825396825397,
"f1_score": 0.6601941747572816,
"precision": 0.85
},
"nuclei_tumor": {
"FN": 11,
"FP": 37,
"TP": 55,
"recall": 0.8333333333333334,
"f1_score": 0.6962025316455697,
"precision": 0.5978260869565217
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 27,
"TP": 67,
"recall": 0.881578947368421,
"f1_score": 0.788235294117647,
"precision": 0.7127659574468085
}
},
"tissue_metrics": {
"average_dice": 0.6948159966849141,
"tissue_tumor": 0.883452274277323,
"tissue_stroma": 0.8369160720637352,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.7537116358144765,
"tissue_blood_vessel": 1.2690355313844728e-09
}
},
{
"filename": "final_test_set_primary_roi_010.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5768398734959542
},
"micro": {
"recall": 0.7408759124087592,
"f1_score": 0.7762906309751435,
"precision": 0.8152610441767069
},
"nuclei_other": {
"FN": 22,
"FP": 27,
"TP": 2,
"recall": 0.08333333333333333,
"f1_score": 0.07547169811320754,
"precision": 0.06896551724137931
},
"nuclei_tumor": {
"FN": 102,
"FP": 43,
"TP": 281,
"recall": 0.7336814621409922,
"f1_score": 0.7949080622347949,
"precision": 0.8672839506172839
},
"nuclei_lymphocyte": {
"FN": 18,
"FP": 22,
"TP": 123,
"recall": 0.8723404255319149,
"f1_score": 0.8601398601398601,
"precision": 0.8482758620689655
}
},
"tissue_metrics": {
"average_dice": 0.605529728992134,
"tissue_tumor": 0.971698678087326,
"tissue_stroma": 4.1401010167508074e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.05594996645933345
}
},
{
"filename": "final_test_set_primary_roi_011.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5690700808625336
},
"micro": {
"recall": 0.7946428571428571,
"f1_score": 0.8486293206197855,
"precision": 0.9104859335038363
},
"nuclei_other": {
"FN": 2,
"FP": 12,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.125,
"precision": 0.07692307692307693
},
"nuclei_tumor": {
"FN": 86,
"FP": 19,
"TP": 345,
"recall": 0.8004640371229699,
"f1_score": 0.8679245283018868,
"precision": 0.9478021978021978
},
"nuclei_lymphocyte": {
"FN": 4,
"FP": 4,
"TP": 10,
"recall": 0.7142857142857143,
"f1_score": 0.7142857142857143,
"precision": 0.7142857142857143
}
},
"tissue_metrics": {
"average_dice": 0.61823626861191,
"tissue_tumor": 0.8678744938008923,
"tissue_stroma": 0.2233068483051867,
"tissue_necrosis": 9.534706321953941e-10,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_012.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7870890897237602
},
"micro": {
"recall": 0.7540229885057471,
"f1_score": 0.7781731909845788,
"precision": 0.803921568627451
},
"nuclei_other": {
"FN": 50,
"FP": 61,
"TP": 152,
"recall": 0.7524752475247525,
"f1_score": 0.7325301204819277,
"precision": 0.7136150234741784
},
"nuclei_tumor": {
"FN": 19,
"FP": 10,
"TP": 55,
"recall": 0.7432432432432432,
"f1_score": 0.7913669064748202,
"precision": 0.8461538461538461
},
"nuclei_lymphocyte": {
"FN": 38,
"FP": 9,
"TP": 121,
"recall": 0.7610062893081762,
"f1_score": 0.8373702422145329,
"precision": 0.9307692307692308
}
},
"tissue_metrics": {
"average_dice": 0.8331351521815631,
"tissue_tumor": 0.876458519614136,
"tissue_stroma": 0.9261611474067576,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.36305609388692145
}
},
{
"filename": "final_test_set_primary_roi_013.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6076309785313959
},
"micro": {
"recall": 0.6126984126984127,
"f1_score": 0.706959706959707,
"precision": 0.8354978354978355
},
"nuclei_other": {
"FN": 28,
"FP": 26,
"TP": 16,
"recall": 0.36363636363636365,
"f1_score": 0.37209302325581395,
"precision": 0.38095238095238093
},
"nuclei_tumor": {
"FN": 195,
"FP": 22,
"TP": 310,
"recall": 0.6138613861386139,
"f1_score": 0.7407407407407408,
"precision": 0.9337349397590361
},
"nuclei_lymphocyte": {
"FN": 21,
"FP": 28,
"TP": 60,
"recall": 0.7407407407407407,
"f1_score": 0.710059171597633,
"precision": 0.6818181818181818
}
},
"tissue_metrics": {
"average_dice": 0.49598053740845705,
"tissue_tumor": 0.8925062658118994,
"tissue_stroma": 0.5873961431698882,
"tissue_necrosis": 2.777777006173054e-07,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.8279743211934124e-10
}
},
{
"filename": "final_test_set_primary_roi_014.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7521801052358642
},
"micro": {
"recall": 0.6946564885496184,
"f1_score": 0.7551867219917012,
"precision": 0.8272727272727273
},
"nuclei_other": {
"FN": 47,
"FP": 29,
"TP": 86,
"recall": 0.6466165413533834,
"f1_score": 0.6935483870967741,
"precision": 0.7478260869565218
},
"nuclei_tumor": {
"FN": 62,
"FP": 14,
"TP": 145,
"recall": 0.7004830917874396,
"f1_score": 0.7923497267759563,
"precision": 0.9119496855345912
},
"nuclei_lymphocyte": {
"FN": 11,
"FP": 14,
"TP": 42,
"recall": 0.7924528301886793,
"f1_score": 0.7706422018348623,
"precision": 0.75
}
},
"tissue_metrics": {
"average_dice": 0.7011221686099683,
"tissue_tumor": 0.9289256893884028,
"tissue_stroma": 0.9275731978684698,
"tissue_necrosis": 1.0,
"tissue_epidermis": 2.8344671193779855e-10,
"tissue_blood_vessel": 0.6491119555095227
}
},
{
"filename": "final_test_set_primary_roi_015.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.37252090800477894
},
"micro": {
"recall": 0.8616071428571429,
"f1_score": 0.8772727272727273,
"precision": 0.8935185185185185
},
"nuclei_other": {
"FN": 17,
"FP": 6,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_tumor": {
"FN": 32,
"FP": 37,
"TP": 384,
"recall": 0.9230769230769231,
"f1_score": 0.9175627240143368,
"precision": 0.9121140142517815
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 3,
"TP": 2,
"recall": 0.13333333333333333,
"f1_score": 0.2,
"precision": 0.4
}
},
"tissue_metrics": {
"average_dice": 0.6635596412069922,
"tissue_tumor": 0.9767587441215324,
"tissue_stroma": 0.34031632985225435,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.0007231320611740649
}
},
{
"filename": "final_test_set_primary_roi_016.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7528811351899808
},
"micro": {
"recall": 0.7419354838709677,
"f1_score": 0.7829787234042553,
"precision": 0.8288288288288288
},
"nuclei_other": {
"FN": 35,
"FP": 25,
"TP": 57,
"recall": 0.6195652173913043,
"f1_score": 0.6551724137931033,
"precision": 0.6951219512195121
},
"nuclei_tumor": {
"FN": 86,
"FP": 37,
"TP": 272,
"recall": 0.7597765363128491,
"f1_score": 0.815592203898051,
"precision": 0.8802588996763754
},
"nuclei_lymphocyte": {
"FN": 7,
"FP": 14,
"TP": 39,
"recall": 0.8478260869565217,
"f1_score": 0.7878787878787878,
"precision": 0.7358490566037735
}
},
"tissue_metrics": {
"average_dice": 0.5565265470074342,
"tissue_tumor": 0.8778760049496259,
"tissue_stroma": 0.9047567235604884,
"tissue_necrosis": 1.0,
"tissue_epidermis": 5.882352906574395e-09,
"tissue_blood_vessel": 6.447037582072699e-10
}
},
{
"filename": "final_test_set_primary_roi_017.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7976184979317099
},
"micro": {
"recall": 0.775,
"f1_score": 0.7948717948717949,
"precision": 0.8157894736842105
},
"nuclei_other": {
"FN": 38,
"FP": 53,
"TP": 174,
"recall": 0.8207547169811321,
"f1_score": 0.7927107061503418,
"precision": 0.7665198237885462
},
"nuclei_tumor": {
"FN": 48,
"FP": 7,
"TP": 102,
"recall": 0.68,
"f1_score": 0.7876447876447877,
"precision": 0.9357798165137615
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 17,
"TP": 65,
"recall": 0.8333333333333334,
"f1_score": 0.8125000000000001,
"precision": 0.7926829268292683
}
},
"tissue_metrics": {
"average_dice": 0.7450760667455218,
"tissue_tumor": 0.931136233670327,
"tissue_stroma": 0.9532502255613141,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.840993873521024,
"tissue_blood_vessel": 9.749439397728927e-10
}
},
{
"filename": "final_test_set_primary_roi_018.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5881552388172042
},
"micro": {
"recall": 0.734065934065934,
"f1_score": 0.7762928529924462,
"precision": 0.8236744759556104
},
"nuclei_other": {
"FN": 26,
"FP": 13,
"TP": 4,
"recall": 0.13333333333333333,
"f1_score": 0.1702127659574468,
"precision": 0.23529411764705882
},
"nuclei_tumor": {
"FN": 162,
"FP": 61,
"TP": 391,
"recall": 0.7070524412296564,
"f1_score": 0.7781094527363184,
"precision": 0.8650442477876106
},
"nuclei_lymphocyte": {
"FN": 54,
"FP": 69,
"TP": 273,
"recall": 0.8348623853211009,
"f1_score": 0.8161434977578476,
"precision": 0.7982456140350878
}
},
"tissue_metrics": {
"average_dice": 0.6981610151931503,
"tissue_tumor": 0.9909980085461951,
"tissue_stroma": 2.31267344516033e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.49980706510688355
}
},
{
"filename": "final_test_set_primary_roi_019.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7273476131275647
},
"micro": {
"recall": 0.7150684931506849,
"f1_score": 0.7219917012448133,
"precision": 0.729050279329609
},
"nuclei_other": {
"FN": 48,
"FP": 34,
"TP": 95,
"recall": 0.6643356643356644,
"f1_score": 0.6985294117647058,
"precision": 0.7364341085271318
},
"nuclei_tumor": {
"FN": 27,
"FP": 51,
"TP": 85,
"recall": 0.7589285714285714,
"f1_score": 0.6854838709677419,
"precision": 0.625
},
"nuclei_lymphocyte": {
"FN": 29,
"FP": 12,
"TP": 81,
"recall": 0.7363636363636363,
"f1_score": 0.7980295566502462,
"precision": 0.8709677419354839
}
},
"tissue_metrics": {
"average_dice": 0.7041600749095844,
"tissue_tumor": 0.7676860383031339,
"tissue_stroma": 0.8165343900840446,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.7071264175542066,
"tissue_blood_vessel": 0.22945352860653678
}
},
{
"filename": "final_test_set_primary_roi_020.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7237586067871978
},
"micro": {
"recall": 0.7344064386317908,
"f1_score": 0.7510288065843621,
"precision": 0.7684210526315789
},
"nuclei_other": {
"FN": 31,
"FP": 56,
"TP": 66,
"recall": 0.6804123711340206,
"f1_score": 0.6027397260273972,
"precision": 0.5409836065573771
},
"nuclei_tumor": {
"FN": 92,
"FP": 20,
"TP": 229,
"recall": 0.7133956386292835,
"f1_score": 0.8035087719298246,
"precision": 0.9196787148594378
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 34,
"TP": 70,
"recall": 0.8860759493670886,
"f1_score": 0.7650273224043715,
"precision": 0.6730769230769231
}
},
"tissue_metrics": {
"average_dice": 0.6943781855927196,
"tissue_tumor": 0.78362460015142,
"tissue_stroma": 0.6882663256556107,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.156566741090001e-09
}
},
{
"filename": "final_test_set_primary_roi_021.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7911959988595091
},
"micro": {
"recall": 0.7736389684813754,
"f1_score": 0.7894736842105263,
"precision": 0.8059701492537313
},
"nuclei_other": {
"FN": 46,
"FP": 23,
"TP": 85,
"recall": 0.648854961832061,
"f1_score": 0.7112970711297071,
"precision": 0.7870370370370371
},
"nuclei_tumor": {
"FN": 22,
"FP": 19,
"TP": 103,
"recall": 0.824,
"f1_score": 0.8340080971659919,
"precision": 0.8442622950819673
},
"nuclei_lymphocyte": {
"FN": 11,
"FP": 23,
"TP": 82,
"recall": 0.8817204301075269,
"f1_score": 0.8282828282828283,
"precision": 0.780952380952381
}
},
"tissue_metrics": {
"average_dice": 0.7674654397682854,
"tissue_tumor": 0.9188584130341233,
"tissue_stroma": 0.9184687854966483,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.1065548297276937e-10
}
},
{
"filename": "final_test_set_primary_roi_022.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7771420985023
},
"micro": {
"recall": 0.8107255520504731,
"f1_score": 0.8371335504885993,
"precision": 0.8653198653198653
},
"nuclei_other": {
"FN": 14,
"FP": 28,
"TP": 29,
"recall": 0.6744186046511628,
"f1_score": 0.58,
"precision": 0.5087719298245614
},
"nuclei_tumor": {
"FN": 32,
"FP": 9,
"TP": 178,
"recall": 0.8476190476190476,
"f1_score": 0.8967254408060453,
"precision": 0.9518716577540107
},
"nuclei_lymphocyte": {
"FN": 14,
"FP": 3,
"TP": 50,
"recall": 0.78125,
"f1_score": 0.8547008547008547,
"precision": 0.9433962264150944
}
},
"tissue_metrics": {
"average_dice": 0.9584720445633195,
"tissue_tumor": 0.9439192442346872,
"tissue_stroma": 0.8484409785819105,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_023.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5685124568103292
},
"micro": {
"recall": 0.7201166180758017,
"f1_score": 0.7730829420970265,
"precision": 0.8344594594594594
},
"nuclei_other": {
"FN": 4,
"FP": 10,
"TP": 5,
"recall": 0.5555555555555556,
"f1_score": 0.4166666666666667,
"precision": 0.3333333333333333
},
"nuclei_tumor": {
"FN": 91,
"FP": 38,
"TP": 241,
"recall": 0.7259036144578314,
"f1_score": 0.7888707037643209,
"precision": 0.8637992831541219
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 1,
"TP": 1,
"recall": 0.5,
"f1_score": 0.5,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.6534657998205444,
"tissue_tumor": 0.9936176550256575,
"tissue_stroma": 0.2737113405805612,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.49650348427796e-09
}
},
{
"filename": "final_test_set_primary_roi_024.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6721154298408426
},
"micro": {
"recall": 0.6477541371158393,
"f1_score": 0.6927939317319848,
"precision": 0.7445652173913043
},
"nuclei_other": {
"FN": 20,
"FP": 77,
"TP": 75,
"recall": 0.7894736842105263,
"f1_score": 0.6072874493927125,
"precision": 0.4934210526315789
},
"nuclei_tumor": {
"FN": 59,
"FP": 4,
"TP": 54,
"recall": 0.4778761061946903,
"f1_score": 0.6315789473684211,
"precision": 0.9310344827586207
},
"nuclei_lymphocyte": {
"FN": 70,
"FP": 13,
"TP": 145,
"recall": 0.6744186046511628,
"f1_score": 0.7774798927613942,
"precision": 0.9177215189873418
}
},
"tissue_metrics": {
"average_dice": 0.7457267859977559,
"tissue_tumor": 0.8481557573386683,
"tissue_stroma": 0.8804781705874045,
"tissue_necrosis": 1.0,
"tissue_epidermis": 2.062706266372306e-09,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_025.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5858613599662675
},
"micro": {
"recall": 0.563963963963964,
"f1_score": 0.5956232159847764,
"precision": 0.6310483870967742
},
"nuclei_other": {
"FN": 134,
"FP": 49,
"TP": 124,
"recall": 0.4806201550387597,
"f1_score": 0.5754060324825986,
"precision": 0.7167630057803468
},
"nuclei_tumor": {
"FN": 22,
"FP": 108,
"TP": 62,
"recall": 0.7380952380952381,
"f1_score": 0.4881889763779527,
"precision": 0.36470588235294116
},
"nuclei_lymphocyte": {
"FN": 86,
"FP": 26,
"TP": 127,
"recall": 0.596244131455399,
"f1_score": 0.6939890710382514,
"precision": 0.8300653594771242
}
},
"tissue_metrics": {
"average_dice": 0.7680506797537477,
"tissue_tumor": 0.536996437936153,
"tissue_stroma": 0.6964362033116969,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6068207575208889
}
},
{
"filename": "final_test_set_primary_roi_026.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6841959831660424
},
"micro": {
"recall": 0.7846481876332623,
"f1_score": 0.8123620309050773,
"precision": 0.8421052631578947
},
"nuclei_other": {
"FN": 12,
"FP": 56,
"TP": 79,
"recall": 0.8681318681318682,
"f1_score": 0.6991150442477877,
"precision": 0.5851851851851851
},
"nuclei_tumor": {
"FN": 75,
"FP": 10,
"TP": 281,
"recall": 0.7893258426966292,
"f1_score": 0.8686244204018546,
"precision": 0.9656357388316151
},
"nuclei_lymphocyte": {
"FN": 14,
"FP": 3,
"TP": 8,
"recall": 0.36363636363636365,
"f1_score": 0.4848484848484849,
"precision": 0.7272727272727273
}
},
"tissue_metrics": {
"average_dice": 0.9098459861243736,
"tissue_tumor": 0.9255682530631232,
"tissue_stroma": 0.9118487006389359,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7118129769198094
}
},
{
"filename": "final_test_set_primary_roi_027.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6967219097803947
},
"micro": {
"recall": 0.73828125,
"f1_score": 0.7644084934277048,
"precision": 0.7924528301886793
},
"nuclei_other": {
"FN": 74,
"FP": 33,
"TP": 116,
"recall": 0.6105263157894737,
"f1_score": 0.6843657817109146,
"precision": 0.7785234899328859
},
"nuclei_tumor": {
"FN": 6,
"FP": 46,
"TP": 31,
"recall": 0.8378378378378378,
"f1_score": 0.543859649122807,
"precision": 0.4025974025974026
},
"nuclei_lymphocyte": {
"FN": 54,
"FP": 20,
"TP": 231,
"recall": 0.8105263157894737,
"f1_score": 0.8619402985074627,
"precision": 0.9203187250996016
}
},
"tissue_metrics": {
"average_dice": 0.7053574210658913,
"tissue_tumor": 0.7812577272553638,
"tissue_stroma": 0.966863685789412,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.01580246974333181,
"tissue_blood_vessel": 0.7628632225413486
}
},
{
"filename": "final_test_set_primary_roi_028.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7142104783754547
},
"micro": {
"recall": 0.6950819672131148,
"f1_score": 0.7571428571428572,
"precision": 0.8313725490196079
},
"nuclei_other": {
"FN": 20,
"FP": 54,
"TP": 50,
"recall": 0.7142857142857143,
"f1_score": 0.5747126436781609,
"precision": 0.4807692307692308
},
"nuclei_tumor": {
"FN": 100,
"FP": 13,
"TP": 241,
"recall": 0.7067448680351907,
"f1_score": 0.8100840336134454,
"precision": 0.9488188976377953
},
"nuclei_lymphocyte": {
"FN": 66,
"FP": 19,
"TP": 133,
"recall": 0.6683417085427136,
"f1_score": 0.7578347578347578,
"precision": 0.875
}
},
"tissue_metrics": {
"average_dice": 0.8981629818390363,
"tissue_tumor": 0.9744745802826539,
"tissue_stroma": 0.8787992223005077,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6375411066120202
}
},
{
"filename": "final_test_set_primary_roi_029.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3530803912463864
},
"micro": {
"recall": 0.6898263027295285,
"f1_score": 0.7239583333333334,
"precision": 0.7616438356164383
},
"nuclei_other": {
"FN": 6,
"FP": 69,
"TP": 13,
"recall": 0.6842105263157895,
"f1_score": 0.25742574257425743,
"precision": 0.15853658536585366
},
"nuclei_tumor": {
"FN": 119,
"FP": 12,
"TP": 265,
"recall": 0.6901041666666666,
"f1_score": 0.8018154311649016,
"precision": 0.9566787003610109
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 6,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.839024564266056,
"tissue_tumor": 0.9728096348726559,
"tissue_stroma": 0.22231318645762452,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_030.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.741890433617198
},
"micro": {
"recall": 0.7045454545454546,
"f1_score": 0.7371202113606341,
"precision": 0.7728531855955678
},
"nuclei_other": {
"FN": 47,
"FP": 37,
"TP": 87,
"recall": 0.6492537313432836,
"f1_score": 0.6744186046511628,
"precision": 0.7016129032258065
},
"nuclei_tumor": {
"FN": 46,
"FP": 30,
"TP": 109,
"recall": 0.7032258064516129,
"f1_score": 0.7414965986394558,
"precision": 0.7841726618705036
},
"nuclei_lymphocyte": {
"FN": 24,
"FP": 15,
"TP": 83,
"recall": 0.7757009345794392,
"f1_score": 0.8097560975609756,
"precision": 0.8469387755102041
}
},
"tissue_metrics": {
"average_dice": 0.8336716639590545,
"tissue_tumor": 0.923262669931525,
"tissue_stroma": 0.9425091064345824,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.7348290804299635,
"tissue_blood_vessel": 0.5677574629992013
}
},
{
"filename": "final_test_set_primary_roi_031.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.65338557297308
},
"micro": {
"recall": 0.6378132118451025,
"f1_score": 0.6738868832731649,
"precision": 0.7142857142857143
},
"nuclei_other": {
"FN": 110,
"FP": 27,
"TP": 126,
"recall": 0.5338983050847458,
"f1_score": 0.6478149100257069,
"precision": 0.8235294117647058
},
"nuclei_tumor": {
"FN": 20,
"FP": 47,
"TP": 39,
"recall": 0.6610169491525424,
"f1_score": 0.5379310344827586,
"precision": 0.45348837209302323
},
"nuclei_lymphocyte": {
"FN": 29,
"FP": 38,
"TP": 115,
"recall": 0.7986111111111112,
"f1_score": 0.7744107744107744,
"precision": 0.7516339869281046
}
},
"tissue_metrics": {
"average_dice": 0.8816405685340604,
"tissue_tumor": 0.9217886000332346,
"tissue_stroma": 0.984639934175192,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5017743084618752
}
},
{
"filename": "final_test_set_primary_roi_032.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7288779376408242
},
"micro": {
"recall": 0.7117701575532901,
"f1_score": 0.7812817904374365,
"precision": 0.8658399098083427
},
"nuclei_other": {
"FN": 42,
"FP": 94,
"TP": 100,
"recall": 0.704225352112676,
"f1_score": 0.5952380952380952,
"precision": 0.5154639175257731
},
"nuclei_tumor": {
"FN": 14,
"FP": 4,
"TP": 30,
"recall": 0.6818181818181818,
"f1_score": 0.7692307692307693,
"precision": 0.8823529411764706
},
"nuclei_lymphocyte": {
"FN": 255,
"FP": 21,
"TP": 638,
"recall": 0.7144456886898096,
"f1_score": 0.8221649484536082,
"precision": 0.9681335356600911
}
},
"tissue_metrics": {
"average_dice": 0.7714525293649117,
"tissue_tumor": 0.8698687698041309,
"tissue_stroma": 0.9873938762066253,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 8.138020826710595e-10
}
},
{
"filename": "final_test_set_primary_roi_033.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3013945119208277
},
"micro": {
"recall": 0.8567774936061381,
"f1_score": 0.8885941644562334,
"precision": 0.9228650137741047
},
"nuclei_other": {
"FN": 0,
"FP": 6,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_tumor": {
"FN": 56,
"FP": 15,
"TP": 335,
"recall": 0.8567774936061381,
"f1_score": 0.9041835357624832,
"precision": 0.9571428571428572
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 7,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7956673312075143,
"tissue_tumor": 0.9783366558126905,
"tissue_stroma": 2.2488081311844903e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_034.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6214036362920318
},
"micro": {
"recall": 0.7232375979112271,
"f1_score": 0.7486486486486486,
"precision": 0.7759103641456583
},
"nuclei_other": {
"FN": 39,
"FP": 27,
"TP": 10,
"recall": 0.20408163265306123,
"f1_score": 0.23255813953488372,
"precision": 0.2702702702702703
},
"nuclei_tumor": {
"FN": 43,
"FP": 40,
"TP": 186,
"recall": 0.8122270742358079,
"f1_score": 0.8175824175824176,
"precision": 0.8230088495575221
},
"nuclei_lymphocyte": {
"FN": 24,
"FP": 13,
"TP": 81,
"recall": 0.7714285714285715,
"f1_score": 0.8140703517587939,
"precision": 0.8617021276595744
}
},
"tissue_metrics": {
"average_dice": 0.36068314774480537,
"tissue_tumor": 0.7658900309454219,
"tissue_stroma": 0.03752567256415914,
"tissue_necrosis": 1.0,
"tissue_epidermis": 3.333333222222226e-08,
"tissue_blood_vessel": 1.881113615724015e-09
}
},
{
"filename": "final_test_set_primary_roi_035.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7353896482744458
},
"micro": {
"recall": 0.7149817295980512,
"f1_score": 0.7693315858453473,
"precision": 0.8326241134751773
},
"nuclei_other": {
"FN": 98,
"FP": 62,
"TP": 141,
"recall": 0.5899581589958159,
"f1_score": 0.6380090497737557,
"precision": 0.6945812807881774
},
"nuclei_tumor": {
"FN": 12,
"FP": 16,
"TP": 39,
"recall": 0.7647058823529411,
"f1_score": 0.7358490566037736,
"precision": 0.7090909090909091
},
"nuclei_lymphocyte": {
"FN": 124,
"FP": 40,
"TP": 407,
"recall": 0.7664783427495292,
"f1_score": 0.8323108384458078,
"precision": 0.9105145413870246
}
},
"tissue_metrics": {
"average_dice": 0.7813327513721168,
"tissue_tumor": 0.7811243867879707,
"tissue_stroma": 0.9531506399740154,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.17238873009859818
}
},
{
"filename": "final_test_set_primary_roi_036.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.670551221280276
},
"micro": {
"recall": 0.6761363636363636,
"f1_score": 0.669479606188467,
"precision": 0.6629526462395543
},
"nuclei_other": {
"FN": 51,
"FP": 58,
"TP": 66,
"recall": 0.5641025641025641,
"f1_score": 0.5477178423236515,
"precision": 0.532258064516129
},
"nuclei_tumor": {
"FN": 9,
"FP": 56,
"TP": 86,
"recall": 0.9052631578947369,
"f1_score": 0.7257383966244726,
"precision": 0.6056338028169014
},
"nuclei_lymphocyte": {
"FN": 54,
"FP": 7,
"TP": 86,
"recall": 0.6142857142857143,
"f1_score": 0.7381974248927038,
"precision": 0.9247311827956989
}
},
"tissue_metrics": {
"average_dice": 0.5053559705997406,
"tissue_tumor": 0.7231299724382771,
"tissue_stroma": 0.8036498388093368,
"tissue_necrosis": 1.3661201999163908e-08,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.8089886851407676e-08
}
},
{
"filename": "final_test_set_primary_roi_037.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7057571086430666
},
"micro": {
"recall": 0.6862244897959183,
"f1_score": 0.6950904392764858,
"precision": 0.7041884816753927
},
"nuclei_other": {
"FN": 30,
"FP": 93,
"TP": 108,
"recall": 0.782608695652174,
"f1_score": 0.6371681415929203,
"precision": 0.5373134328358209
},
"nuclei_tumor": {
"FN": 48,
"FP": 10,
"TP": 78,
"recall": 0.6190476190476191,
"f1_score": 0.7289719626168225,
"precision": 0.8863636363636364
},
"nuclei_lymphocyte": {
"FN": 45,
"FP": 10,
"TP": 83,
"recall": 0.6484375,
"f1_score": 0.751131221719457,
"precision": 0.8924731182795699
}
},
"tissue_metrics": {
"average_dice": 0.7773680405979386,
"tissue_tumor": 0.9274737904073996,
"tissue_stroma": 0.9345233509504127,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.024843061631880905
}
},
{
"filename": "final_test_set_primary_roi_038.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8076081355667718
},
"micro": {
"recall": 0.7893617021276595,
"f1_score": 0.8012958963282937,
"precision": 0.8135964912280702
},
"nuclei_other": {
"FN": 78,
"FP": 21,
"TP": 131,
"recall": 0.6267942583732058,
"f1_score": 0.7257617728531855,
"precision": 0.8618421052631579
},
"nuclei_tumor": {
"FN": 8,
"FP": 26,
"TP": 92,
"recall": 0.92,
"f1_score": 0.8440366972477064,
"precision": 0.7796610169491526
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 38,
"TP": 148,
"recall": 0.9192546583850931,
"f1_score": 0.8530259365994236,
"precision": 0.7956989247311828
}
},
"tissue_metrics": {
"average_dice": 0.9137474580341453,
"tissue_tumor": 0.9772063702724838,
"tissue_stroma": 0.9781410540265745,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6133898658716681
}
},
{
"filename": "final_test_set_primary_roi_039.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7344430430619081
},
"micro": {
"recall": 0.7520435967302452,
"f1_score": 0.7896995708154506,
"precision": 0.8313253012048193
},
"nuclei_other": {
"FN": 23,
"FP": 15,
"TP": 34,
"recall": 0.5964912280701754,
"f1_score": 0.6415094339622641,
"precision": 0.6938775510204082
},
"nuclei_tumor": {
"FN": 38,
"FP": 32,
"TP": 193,
"recall": 0.8354978354978355,
"f1_score": 0.8464912280701754,
"precision": 0.8577777777777778
},
"nuclei_lymphocyte": {
"FN": 30,
"FP": 9,
"TP": 49,
"recall": 0.620253164556962,
"f1_score": 0.7153284671532847,
"precision": 0.8448275862068966
}
},
"tissue_metrics": {
"average_dice": 0.7779722468196614,
"tissue_tumor": 0.9868009339065504,
"tissue_stroma": 0.903060292330121,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 7.861635158320479e-09
}
},
{
"filename": "final_test_set_primary_roi_040.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5854506818320798
},
"micro": {
"recall": 0.7085714285714285,
"f1_score": 0.746987951807229,
"precision": 0.7898089171974523
},
"nuclei_other": {
"FN": 22,
"FP": 32,
"TP": 45,
"recall": 0.6716417910447762,
"f1_score": 0.625,
"precision": 0.5844155844155844
},
"nuclei_tumor": {
"FN": 51,
"FP": 31,
"TP": 196,
"recall": 0.7935222672064778,
"f1_score": 0.8270042194092827,
"precision": 0.8634361233480177
},
"nuclei_lymphocyte": {
"FN": 29,
"FP": 3,
"TP": 7,
"recall": 0.19444444444444445,
"f1_score": 0.30434782608695654,
"precision": 0.7
}
},
"tissue_metrics": {
"average_dice": 0.7076973882773571,
"tissue_tumor": 0.9596894662704042,
"tissue_stroma": 0.8481569289134496,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.7306405456197388,
"tissue_blood_vessel": 5.831923948310537e-10
}
},
{
"filename": "final_test_set_primary_roi_041.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5088730615525358
},
"micro": {
"recall": 0.5765027322404371,
"f1_score": 0.6011396011396012,
"precision": 0.6279761904761905
},
"nuclei_other": {
"FN": 75,
"FP": 26,
"TP": 30,
"recall": 0.2857142857142857,
"f1_score": 0.37267080745341613,
"precision": 0.5357142857142857
},
"nuclei_tumor": {
"FN": 35,
"FP": 96,
"TP": 162,
"recall": 0.8223350253807107,
"f1_score": 0.7120879120879121,
"precision": 0.627906976744186
},
"nuclei_lymphocyte": {
"FN": 45,
"FP": 3,
"TP": 19,
"recall": 0.296875,
"f1_score": 0.441860465116279,
"precision": 0.8636363636363636
}
},
"tissue_metrics": {
"average_dice": 0.8420084214128576,
"tissue_tumor": 0.8713197991707645,
"tissue_stroma": 0.6264994014452819,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7122229064482416
}
},
{
"filename": "final_test_set_primary_roi_042.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7744472341369207
},
"micro": {
"recall": 0.8668076109936576,
"f1_score": 0.8991228070175439,
"precision": 0.9339407744874715
},
"nuclei_other": {
"FN": 20,
"FP": 16,
"TP": 73,
"recall": 0.7849462365591398,
"f1_score": 0.8021978021978021,
"precision": 0.8202247191011236
},
"nuclei_tumor": {
"FN": 33,
"FP": 7,
"TP": 326,
"recall": 0.9080779944289693,
"f1_score": 0.9421965317919075,
"precision": 0.978978978978979
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 6,
"TP": 11,
"recall": 0.5238095238095238,
"f1_score": 0.5789473684210527,
"precision": 0.6470588235294118
}
},
"tissue_metrics": {
"average_dice": 0.7755290709502121,
"tissue_tumor": 0.9821822648226224,
"tissue_stroma": 0.8464226055954581,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.04904048433297967
}
},
{
"filename": "final_test_set_primary_roi_043.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7314670321575282
},
"micro": {
"recall": 0.6909581646423751,
"f1_score": 0.7420289855072465,
"precision": 0.8012519561815337
},
"nuclei_other": {
"FN": 94,
"FP": 47,
"TP": 116,
"recall": 0.5523809523809524,
"f1_score": 0.6219839142091153,
"precision": 0.7116564417177914
},
"nuclei_tumor": {
"FN": 79,
"FP": 14,
"TP": 169,
"recall": 0.6814516129032258,
"f1_score": 0.7842227378190254,
"precision": 0.9234972677595629
},
"nuclei_lymphocyte": {
"FN": 56,
"FP": 66,
"TP": 227,
"recall": 0.8021201413427562,
"f1_score": 0.7881944444444443,
"precision": 0.7747440273037542
}
},
"tissue_metrics": {
"average_dice": 0.738336020165392,
"tissue_tumor": 0.8358803483235588,
"tissue_stroma": 0.855799748810639,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.692762172478722e-09
}
},
{
"filename": "final_test_set_primary_roi_044.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6541292085081795
},
"micro": {
"recall": 0.7465618860510805,
"f1_score": 0.7592407592407592,
"precision": 0.7723577235772358
},
"nuclei_other": {
"FN": 54,
"FP": 38,
"TP": 71,
"recall": 0.568,
"f1_score": 0.6068376068376068,
"precision": 0.6513761467889908
},
"nuclei_tumor": {
"FN": 65,
"FP": 51,
"TP": 291,
"recall": 0.8174157303370787,
"f1_score": 0.8338108882521491,
"precision": 0.8508771929824561
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 23,
"TP": 18,
"recall": 0.6428571428571429,
"f1_score": 0.5217391304347826,
"precision": 0.43902439024390244
}
},
"tissue_metrics": {
"average_dice": 0.4192081673948745,
"tissue_tumor": 0.913281127254897,
"tissue_stroma": 0.1827597095616069,
"tissue_necrosis": 6.493590825433215e-11,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 9.293248454133801e-11
}
},
{
"filename": "final_test_set_primary_roi_045.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6686202686202686
},
"micro": {
"recall": 0.8700361010830325,
"f1_score": 0.8353552859618717,
"precision": 0.8033333333333333
},
"nuclei_other": {
"FN": 8,
"FP": 46,
"TP": 64,
"recall": 0.8888888888888888,
"f1_score": 0.7032967032967034,
"precision": 0.5818181818181818
},
"nuclei_tumor": {
"FN": 27,
"FP": 11,
"TP": 176,
"recall": 0.8669950738916257,
"f1_score": 0.9025641025641026,
"precision": 0.9411764705882353
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 2,
"TP": 1,
"recall": 0.5,
"f1_score": 0.4,
"precision": 0.3333333333333333
}
},
"tissue_metrics": {
"average_dice": 0.7126345990029673,
"tissue_tumor": 0.9652459192370147,
"tissue_stroma": 0.2494470673184008,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.34848000845942106,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_046.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5649184404944774
},
"micro": {
"recall": 0.6109510086455331,
"f1_score": 0.654320987654321,
"precision": 0.7043189368770764
},
"nuclei_other": {
"FN": 99,
"FP": 18,
"TP": 162,
"recall": 0.6206896551724138,
"f1_score": 0.7346938775510204,
"precision": 0.9
},
"nuclei_tumor": {
"FN": 27,
"FP": 69,
"TP": 45,
"recall": 0.625,
"f1_score": 0.48387096774193544,
"precision": 0.39473684210526316
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 2,
"TP": 5,
"recall": 0.35714285714285715,
"f1_score": 0.4761904761904762,
"precision": 0.7142857142857143
}
},
"tissue_metrics": {
"average_dice": 0.8166736218155716,
"tissue_tumor": 0.7417493276846104,
"tissue_stroma": 0.9281937030566622,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.927087548529533,
"tissue_blood_vessel": 0.4863375298070521
}
},
{
"filename": "final_test_set_primary_roi_047.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.556949569495695
},
"micro": {
"recall": 0.7916666666666666,
"f1_score": 0.8333333333333333,
"precision": 0.8796296296296297
},
"nuclei_other": {
"FN": 28,
"FP": 8,
"TP": 72,
"recall": 0.72,
"f1_score": 0.7999999999999999,
"precision": 0.9
},
"nuclei_tumor": {
"FN": 18,
"FP": 17,
"TP": 118,
"recall": 0.8676470588235294,
"f1_score": 0.8708487084870848,
"precision": 0.8740740740740741
},
"nuclei_lymphocyte": {
"FN": 4,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8206989504799512,
"tissue_tumor": 0.8845166921651053,
"tissue_stroma": 0.4946149081763438,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.9634885834053538,
"tissue_blood_vessel": 0.7608745686529539
}
}
],
"aggregates": {
"f1_nuclei": {
"nuclei_other": 0.4502176847673079,
"nuclei_tumor": 0.7639937616122651,
"nuclei_lymphocyte": 0.6578929797948964
},
"dice_tissue": {
"average_dice": 0.733513076679089,
"tissue_tumor": 0.8839414690552047,
"tissue_stroma": 0.6126040349264961,
"tissue_necrosis": 0.8438462427649318,
"tissue_epidermis": 0.876117514183061,
"tissue_blood_vessel": 0.45105612246575183
},
"macro_f1_nuclei": 0.6240348087248231,
"micro_dice_tissue": {
"tissue_tumor": 0.9154240719773273,
"tissue_stroma": 0.8198243651305132,
"tissue_necrosis": 0.1561428118120044,
"tissue_epidermis": 0.8004056808299576,
"average_micro_dice": 0.6204451304687446,
"tissue_blood_vessel": 0.4104287225939205
}
}
}