Evaluation
- ID
- 06f034c7-09b3-4040-9a52-744c13617188
- Submission ID
- cfd135ca-d54e-43e9-a57b-ed2af54a96a8
- Method ID
- 30dff492-a32f-405c-8aed-d904786e0edc
- Status
-
Succeeded
- User
-
mlafarge
- Challenge
-
PUMA
- Phase
-
Track 2: Final test phase
- Algorithm
-
P4U2_PUMA10C_classifier
(Image Version 75c52c8f-78b5-4d8e-9944-2c4d7d0d6ede
)
- Submission created
- March 15, 2025, 11:07 p.m.
- Result created
- March 15, 2025, 11:07 p.m.
- Position on leaderboard
-
7
- Comment:
- UNet - no pre-training - no additional data
Metrics
{
"results": [
{
"filename": "final_test_set_metastatic_roi_001.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3528456558061821
},
"micro": {
"recall": 0.7615658362989324,
"f1_score": 0.7548500881834215,
"precision": 0.7482517482517482
},
"nuclei_tumor": {
"FN": 55,
"FP": 47,
"TP": 189,
"recall": 0.7745901639344263,
"f1_score": 0.7875,
"precision": 0.8008474576271186
},
"nuclei_stroma": {
"FN": 1,
"FP": 14,
"TP": 2,
"recall": 0.6666666666666666,
"f1_score": 0.21052631578947367,
"precision": 0.125
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 4,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 6,
"TP": 22,
"recall": 0.7857142857142857,
"f1_score": 0.7857142857142857,
"precision": 0.7857142857142857
},
"nuclei_endothelium": {
"FN": 4,
"FP": 0,
"TP": 1,
"recall": 0.2,
"f1_score": 0.33333333333333337,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.634517804021671,
"tissue_tumor": 0.9888585295739118,
"tissue_stroma": 5.467468532162556e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.18373048506697437
}
},
{
"filename": "final_test_set_metastatic_roi_002.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.37763221674581005
},
"micro": {
"recall": 0.8085106382978723,
"f1_score": 0.8300341296928326,
"precision": 0.85273492286115
},
"nuclei_tumor": {
"FN": 126,
"FP": 58,
"TP": 561,
"recall": 0.8165938864628821,
"f1_score": 0.8591117917304747,
"precision": 0.9063004846526656
},
"nuclei_stroma": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 4,
"FP": 11,
"TP": 1,
"recall": 0.2,
"f1_score": 0.11764705882352941,
"precision": 0.08333333333333333
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 14,
"FP": 31,
"TP": 45,
"recall": 0.7627118644067796,
"f1_score": 0.6666666666666666,
"precision": 0.5921052631578947
},
"nuclei_neutrophil": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 0,
"TP": 1,
"recall": 1.0,
"f1_score": 1.0,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.5942039797144776,
"tissue_tumor": 0.9710198970801505,
"tissue_stroma": 1.9471542337077412e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.2975217318054734e-09
}
},
{
"filename": "final_test_set_metastatic_roi_003.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.21356837606837606
},
"micro": {
"recall": 0.7661870503597122,
"f1_score": 0.8052930056710775,
"precision": 0.848605577689243
},
"nuclei_tumor": {
"FN": 40,
"FP": 22,
"TP": 203,
"recall": 0.8353909465020576,
"f1_score": 0.8675213675213674,
"precision": 0.9022222222222223
},
"nuclei_stroma": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 5,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 2,
"FP": 7,
"TP": 2,
"recall": 0.5,
"f1_score": 0.30769230769230765,
"precision": 0.2222222222222222
},
"nuclei_neutrophil": {
"FN": 5,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_endothelium": {
"FN": 5,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_melanophage": {
"FN": 8,
"FP": 6,
"TP": 8,
"recall": 0.5,
"f1_score": 0.5333333333333333,
"precision": 0.5714285714285714
}
},
"tissue_metrics": {
"average_dice": 0.399456015093871,
"tissue_tumor": 0.9972800676312825,
"tissue_stroma": 3.92156861207228e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 2.1905804990348732e-09,
"tissue_blood_vessel": 1.725923366023605e-09
}
},
{
"filename": "final_test_set_metastatic_roi_004.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2220657264214355
},
"micro": {
"recall": 0.5931506849315068,
"f1_score": 0.6961414790996784,
"precision": 0.8424124513618677
},
"nuclei_tumor": {
"FN": 163,
"FP": 36,
"TP": 413,
"recall": 0.7170138888888888,
"f1_score": 0.8058536585365853,
"precision": 0.9198218262806236
},
"nuclei_stroma": {
"FN": 17,
"FP": 9,
"TP": 2,
"recall": 0.10526315789473684,
"f1_score": 0.13333333333333333,
"precision": 0.18181818181818182
},
"nuclei_apoptosis": {
"FN": 61,
"FP": 32,
"TP": 10,
"recall": 0.14084507042253522,
"f1_score": 0.1769911504424779,
"precision": 0.23809523809523808
},
"nuclei_lymphocyte": {
"FN": 54,
"FP": 4,
"TP": 8,
"recall": 0.12903225806451613,
"f1_score": 0.2162162162162162,
"precision": 0.6666666666666666
},
"nuclei_neutrophil": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.606345613481231,
"tissue_tumor": 0.948647694947985,
"tissue_stroma": 0.08308035506686577,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.7391304045368627e-08
}
},
{
"filename": "final_test_set_metastatic_roi_005.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.41433805777273314
},
"micro": {
"recall": 0.691437802907916,
"f1_score": 0.7217537942664418,
"precision": 0.7548500881834215
},
"nuclei_tumor": {
"FN": 38,
"FP": 83,
"TP": 146,
"recall": 0.7934782608695652,
"f1_score": 0.7070217917675545,
"precision": 0.6375545851528385
},
"nuclei_stroma": {
"FN": 1,
"FP": 12,
"TP": 1,
"recall": 0.5,
"f1_score": 0.13333333333333336,
"precision": 0.07692307692307693
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 1,
"recall": 1.0,
"f1_score": 0.6666666666666666,
"precision": 0.5
},
"nuclei_histiocyte": {
"FN": 111,
"FP": 9,
"TP": 34,
"recall": 0.23448275862068965,
"f1_score": 0.3617021276595745,
"precision": 0.7906976744186046
},
"nuclei_lymphocyte": {
"FN": 38,
"FP": 32,
"TP": 244,
"recall": 0.8652482269503546,
"f1_score": 0.8745519713261649,
"precision": 0.8840579710144928
},
"nuclei_neutrophil": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_endothelium": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 2,
"TP": 2,
"recall": 0.6666666666666666,
"f1_score": 0.5714285714285715,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.9084526648684139,
"tissue_tumor": 0.814962501702311,
"tissue_stroma": 0.7273008226397586,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_006.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5029290332632235
},
"micro": {
"recall": 0.7984732824427481,
"f1_score": 0.8497156783103169,
"precision": 0.9079861111111112
},
"nuclei_tumor": {
"FN": 99,
"FP": 50,
"TP": 509,
"recall": 0.837171052631579,
"f1_score": 0.8723221936589546,
"precision": 0.9105545617173524
},
"nuclei_stroma": {
"FN": 0,
"FP": 1,
"TP": 1,
"recall": 1.0,
"f1_score": 0.6666666666666666,
"precision": 0.5
},
"nuclei_apoptosis": {
"FN": 5,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 28,
"FP": 1,
"TP": 13,
"recall": 0.3170731707317073,
"f1_score": 0.4727272727272727,
"precision": 0.9285714285714286
}
},
"tissue_metrics": {
"average_dice": 0.5961817711427386,
"tissue_tumor": 0.9809088545653826,
"tissue_stroma": 7.674597077763165e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 3.8085082058847135e-10,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_007.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3007337395846288
},
"micro": {
"recall": 0.8120300751879699,
"f1_score": 0.8372093023255813,
"precision": 0.864
},
"nuclei_tumor": {
"FN": 60,
"FP": 37,
"TP": 317,
"recall": 0.8408488063660478,
"f1_score": 0.8673050615595076,
"precision": 0.8954802259887006
},
"nuclei_stroma": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 3,
"FP": 11,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 2,
"TP": 7,
"recall": 0.5384615384615384,
"f1_score": 0.6363636363636364,
"precision": 0.7777777777777778
},
"nuclei_plasma_cell": {
"FN": 6,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 1.0,
"tissue_tumor": 1.0,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_008.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.34962016534659185
},
"micro": {
"recall": 0.7037037037037037,
"f1_score": 0.76,
"precision": 0.8260869565217391
},
"nuclei_tumor": {
"FN": 97,
"FP": 37,
"TP": 286,
"recall": 0.7467362924281984,
"f1_score": 0.810198300283286,
"precision": 0.8854489164086687
},
"nuclei_stroma": {
"FN": 8,
"FP": 10,
"TP": 5,
"recall": 0.38461538461538464,
"f1_score": 0.3571428571428571,
"precision": 0.3333333333333333
},
"nuclei_epithelium": {
"FN": 41,
"FP": 10,
"TP": 62,
"recall": 0.6019417475728155,
"f1_score": 0.7085714285714285,
"precision": 0.8611111111111112
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 10,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 7,
"TP": 8,
"recall": 0.6153846153846154,
"f1_score": 0.5714285714285715,
"precision": 0.5333333333333333
},
"nuclei_endothelium": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.6443000036249817,
"tissue_tumor": 0.9205511126429629,
"tissue_stroma": 0.45469224387076335,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.8462566567212072,
"tissue_blood_vessel": 4.889975526210389e-09
}
},
{
"filename": "final_test_set_metastatic_roi_009.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.34986370610424516
},
"micro": {
"recall": 0.7177615571776156,
"f1_score": 0.7320099255583128,
"precision": 0.7468354430379747
},
"nuclei_tumor": {
"FN": 60,
"FP": 60,
"TP": 188,
"recall": 0.7580645161290323,
"f1_score": 0.7580645161290323,
"precision": 0.7580645161290323
},
"nuclei_stroma": {
"FN": 0,
"FP": 16,
"TP": 1,
"recall": 1.0,
"f1_score": 0.1111111111111111,
"precision": 0.058823529411764705
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 2,
"FP": 13,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.11764705882352941,
"precision": 0.07142857142857142
},
"nuclei_lymphocyte": {
"FN": 50,
"FP": 9,
"TP": 104,
"recall": 0.6753246753246753,
"f1_score": 0.7790262172284645,
"precision": 0.9203539823008849
},
"nuclei_endothelium": {
"FN": 4,
"FP": 0,
"TP": 1,
"recall": 0.2,
"f1_score": 0.33333333333333337,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.6566987008128979,
"tissue_tumor": 0.9566950027452938,
"tissue_stroma": 0.3267984972458759,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 4.073319739008881e-09
}
},
{
"filename": "final_test_set_metastatic_roi_010.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.24859623806992232
},
"micro": {
"recall": 0.7972350230414746,
"f1_score": 0.7440860215053763,
"precision": 0.6975806451612904
},
"nuclei_tumor": {
"FN": 30,
"FP": 52,
"TP": 168,
"recall": 0.8484848484848485,
"f1_score": 0.8038277511961722,
"precision": 0.7636363636363637
},
"nuclei_stroma": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 5,
"FP": 7,
"TP": 1,
"recall": 0.16666666666666666,
"f1_score": 0.14285714285714288,
"precision": 0.125
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 10,
"TP": 4,
"recall": 0.3076923076923077,
"f1_score": 0.29629629629629634,
"precision": 0.2857142857142857
},
"nuclei_melanophage": {
"FN": 0,
"FP": 5,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7051798594671745,
"tissue_tumor": 0.9511285097939205,
"tissue_stroma": 2.9761904753047054e-10,
"tissue_necrosis": 0.5747707872443334,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_011.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2521942020176239
},
"micro": {
"recall": 0.4722222222222222,
"f1_score": 0.49635036496350365,
"precision": 0.5230769230769231
},
"nuclei_tumor": {
"FN": 85,
"FP": 14,
"TP": 71,
"recall": 0.4551282051282051,
"f1_score": 0.5892116182572613,
"precision": 0.8352941176470589
},
"nuclei_stroma": {
"FN": 7,
"FP": 5,
"TP": 1,
"recall": 0.125,
"f1_score": 0.14285714285714288,
"precision": 0.16666666666666666
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 60,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 7,
"TP": 27,
"recall": 0.7297297297297297,
"f1_score": 0.7605633802816901,
"precision": 0.7941176470588235
},
"nuclei_endothelium": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 12,
"FP": 4,
"TP": 3,
"recall": 0.2,
"f1_score": 0.27272727272727276,
"precision": 0.42857142857142855
}
},
"tissue_metrics": {
"average_dice": 0.6846587496231875,
"tissue_tumor": 0.9538386105115246,
"tissue_stroma": 0.46945513645998604,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.1444266409425194e-09
}
},
{
"filename": "final_test_set_metastatic_roi_012.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4714642767278847
},
"micro": {
"recall": 0.6565040650406504,
"f1_score": 0.6991341991341992,
"precision": 0.7476851851851852
},
"nuclei_tumor": {
"FN": 62,
"FP": 34,
"TP": 116,
"recall": 0.651685393258427,
"f1_score": 0.7073170731707319,
"precision": 0.7733333333333333
},
"nuclei_stroma": {
"FN": 6,
"FP": 3,
"TP": 7,
"recall": 0.5384615384615384,
"f1_score": 0.608695652173913,
"precision": 0.7
},
"nuclei_histiocyte": {
"FN": 8,
"FP": 59,
"TP": 11,
"recall": 0.5789473684210527,
"f1_score": 0.24719101123595505,
"precision": 0.15714285714285714
},
"nuclei_lymphocyte": {
"FN": 93,
"FP": 5,
"TP": 189,
"recall": 0.6702127659574468,
"f1_score": 0.7941176470588236,
"precision": 0.9742268041237113
},
"nuclei_endothelium": {
"FN": 0,
"FP": 8,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.5127903849403163,
"tissue_tumor": 0.8500488991384938,
"tissue_stroma": 0.7139030090777025,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.6286644685885268e-08,
"tissue_blood_vessel": 1.9873998843358308e-10
}
},
{
"filename": "final_test_set_metastatic_roi_013.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.25125428260443294
},
"micro": {
"recall": 0.30129390018484287,
"f1_score": 0.3171206225680934,
"precision": 0.3347022587268994
},
"nuclei_tumor": {
"FN": 16,
"FP": 261,
"TP": 84,
"recall": 0.84,
"f1_score": 0.3775280898876405,
"precision": 0.24347826086956523
},
"nuclei_stroma": {
"FN": 20,
"FP": 17,
"TP": 16,
"recall": 0.4444444444444444,
"f1_score": 0.463768115942029,
"precision": 0.48484848484848486
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 298,
"FP": 17,
"TP": 34,
"recall": 0.10240963855421686,
"f1_score": 0.1775456919060052,
"precision": 0.6666666666666666
},
"nuclei_lymphocyte": {
"FN": 26,
"FP": 22,
"TP": 27,
"recall": 0.5094339622641509,
"f1_score": 0.5294117647058822,
"precision": 0.5510204081632653
},
"nuclei_neutrophil": {
"FN": 6,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_plasma_cell": {
"FN": 12,
"FP": 3,
"TP": 2,
"recall": 0.14285714285714285,
"f1_score": 0.21052631578947364,
"precision": 0.4
}
},
"tissue_metrics": {
"average_dice": 0.3110580323898981,
"tissue_tumor": 0.46884153848064264,
"tissue_stroma": 0.08644841942410356,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.923076553254509e-07,
"tissue_blood_vessel": 1.1737089064118675e-08
}
},
{
"filename": "final_test_set_metastatic_roi_014.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5975461936437546
},
"micro": {
"recall": 0.8133333333333334,
"f1_score": 0.83704974271012,
"precision": 0.8621908127208481
},
"nuclei_tumor": {
"FN": 25,
"FP": 15,
"TP": 144,
"recall": 0.8520710059171598,
"f1_score": 0.8780487804878049,
"precision": 0.9056603773584906
},
"nuclei_stroma": {
"FN": 12,
"FP": 2,
"TP": 4,
"recall": 0.25,
"f1_score": 0.36363636363636365,
"precision": 0.6666666666666666
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 0,
"TP": 2,
"recall": 0.5,
"f1_score": 0.6666666666666666,
"precision": 1.0
},
"nuclei_histiocyte": {
"FN": 8,
"FP": 10,
"TP": 2,
"recall": 0.2,
"f1_score": 0.1818181818181818,
"precision": 0.16666666666666666
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 12,
"TP": 92,
"recall": 0.9108910891089109,
"f1_score": 0.8975609756097561,
"precision": 0.8846153846153846
}
},
"tissue_metrics": {
"average_dice": 0.7611722936454194,
"tissue_tumor": 0.9698235004199236,
"tissue_stroma": 0.8360375511406806,
"tissue_necrosis": 1.0,
"tissue_epidermis": 4.1666649305562796e-07,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_015.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5077733781297497
},
"micro": {
"recall": 0.8267477203647416,
"f1_score": 0.8473520249221185,
"precision": 0.8690095846645367
},
"nuclei_tumor": {
"FN": 39,
"FP": 14,
"TP": 205,
"recall": 0.8401639344262295,
"f1_score": 0.8855291576673866,
"precision": 0.9360730593607306
},
"nuclei_stroma": {
"FN": 5,
"FP": 1,
"TP": 3,
"recall": 0.375,
"f1_score": 0.5,
"precision": 0.75
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 1,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.4,
"precision": 0.5
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 13,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 11,
"TP": 62,
"recall": 0.8732394366197183,
"f1_score": 0.861111111111111,
"precision": 0.8493150684931506
},
"nuclei_plasma_cell": {
"FN": 2,
"FP": 1,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.4,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.7715967581460308,
"tissue_tumor": 0.9832157146439562,
"tissue_stroma": 0.8747680445404575,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.1545740329787374e-08
}
},
{
"filename": "final_test_set_metastatic_roi_016.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.21054112298351926
},
"micro": {
"recall": 0.6754563894523327,
"f1_score": 0.7085106382978723,
"precision": 0.7449664429530202
},
"nuclei_tumor": {
"FN": 100,
"FP": 81,
"TP": 319,
"recall": 0.7613365155131265,
"f1_score": 0.778998778998779,
"precision": 0.7975
},
"nuclei_stroma": {
"FN": 15,
"FP": 21,
"TP": 8,
"recall": 0.34782608695652173,
"f1_score": 0.3076923076923077,
"precision": 0.27586206896551724
},
"nuclei_apoptosis": {
"FN": 26,
"FP": 4,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 4,
"TP": 6,
"recall": 0.2857142857142857,
"f1_score": 0.3870967741935483,
"precision": 0.6
},
"nuclei_endothelium": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 3,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.9051071816493013,
"tissue_tumor": 0.9753755825925855,
"tissue_stroma": 0.5501603256539208,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_017.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.24530651340996174
},
"micro": {
"recall": 0.4727272727272727,
"f1_score": 0.5298398835516739,
"precision": 0.6026490066225165
},
"nuclei_tumor": {
"FN": 179,
"FP": 29,
"TP": 157,
"recall": 0.46726190476190477,
"f1_score": 0.6015325670498084,
"precision": 0.8440860215053764
},
"nuclei_stroma": {
"FN": 0,
"FP": 65,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 4,
"FP": 3,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 20,
"FP": 10,
"TP": 25,
"recall": 0.5555555555555556,
"f1_score": 0.6250000000000001,
"precision": 0.7142857142857143
},
"nuclei_endothelium": {
"FN": 0,
"FP": 13,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.3852399812782098,
"tissue_tumor": 0.9261998987212813,
"tissue_stroma": 7.201653499124881e-11,
"tissue_necrosis": 1.0,
"tissue_epidermis": 3.6231883926696074e-09,
"tissue_blood_vessel": 3.9745627822950605e-09
}
},
{
"filename": "final_test_set_metastatic_roi_018.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.47198674824358894
},
"micro": {
"recall": 0.6461988304093568,
"f1_score": 0.711755233494364,
"precision": 0.7921146953405018
},
"nuclei_tumor": {
"FN": 115,
"FP": 68,
"TP": 268,
"recall": 0.6997389033942559,
"f1_score": 0.7454798331015299,
"precision": 0.7976190476190477
},
"nuclei_stroma": {
"FN": 13,
"FP": 4,
"TP": 6,
"recall": 0.3157894736842105,
"f1_score": 0.41379310344827586,
"precision": 0.6
},
"nuclei_apoptosis": {
"FN": 6,
"FP": 6,
"TP": 1,
"recall": 0.14285714285714285,
"f1_score": 0.14285714285714285,
"precision": 0.14285714285714285
},
"nuclei_histiocyte": {
"FN": 35,
"FP": 16,
"TP": 11,
"recall": 0.2391304347826087,
"f1_score": 0.30136986301369867,
"precision": 0.4074074074074074
},
"nuclei_lymphocyte": {
"FN": 71,
"FP": 13,
"TP": 152,
"recall": 0.6816143497757847,
"f1_score": 0.7835051546391754,
"precision": 0.9212121212121213
},
"nuclei_endothelium": {
"FN": 1,
"FP": 6,
"TP": 1,
"recall": 0.5,
"f1_score": 0.22222222222222224,
"precision": 0.14285714285714285
},
"nuclei_melanophage": {
"FN": 1,
"FP": 1,
"TP": 2,
"recall": 0.6666666666666666,
"f1_score": 0.6666666666666666,
"precision": 0.6666666666666666
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 2,
"TP": 1,
"recall": 1.0,
"f1_score": 0.5,
"precision": 0.3333333333333333
}
},
"tissue_metrics": {
"average_dice": 0.514371099800325,
"tissue_tumor": 0.8827065350431157,
"tissue_stroma": 0.6891489185190166,
"tissue_necrosis": 1.0,
"tissue_epidermis": 4.484304731645528e-08,
"tissue_blood_vessel": 5.964451863315966e-10
}
},
{
"filename": "final_test_set_metastatic_roi_019.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.34947230088207526
},
"micro": {
"recall": 0.5427631578947368,
"f1_score": 0.5641025641025642,
"precision": 0.5871886120996441
},
"nuclei_tumor": {
"FN": 79,
"FP": 13,
"TP": 101,
"recall": 0.5611111111111111,
"f1_score": 0.6870748299319728,
"precision": 0.8859649122807017
},
"nuclei_stroma": {
"FN": 10,
"FP": 16,
"TP": 1,
"recall": 0.09090909090909091,
"f1_score": 0.07142857142857142,
"precision": 0.058823529411764705
},
"nuclei_apoptosis": {
"FN": 4,
"FP": 2,
"TP": 4,
"recall": 0.5,
"f1_score": 0.5714285714285715,
"precision": 0.6666666666666666
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 32,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 37,
"TP": 51,
"recall": 0.7727272727272727,
"f1_score": 0.6623376623376623,
"precision": 0.5795454545454546
},
"nuclei_neutrophil": {
"FN": 3,
"FP": 2,
"TP": 7,
"recall": 0.7,
"f1_score": 0.7368421052631577,
"precision": 0.7777777777777778
},
"nuclei_endothelium": {
"FN": 0,
"FP": 14,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 28,
"FP": 0,
"TP": 1,
"recall": 0.034482758620689655,
"f1_score": 0.06666666666666667,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.5907497842521173,
"tissue_tumor": 0.9097761347839756,
"tissue_stroma": 0.04397278480688326,
"tissue_necrosis": 1.669727831575008e-09,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_020.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.31423494201271973
},
"micro": {
"recall": 0.630173564753004,
"f1_score": 0.6997776130467013,
"precision": 0.7866666666666666
},
"nuclei_tumor": {
"FN": 55,
"FP": 53,
"TP": 166,
"recall": 0.751131221719457,
"f1_score": 0.7545454545454544,
"precision": 0.7579908675799086
},
"nuclei_stroma": {
"FN": 5,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 1,
"FP": 64,
"TP": 8,
"recall": 0.8888888888888888,
"f1_score": 0.19753086419753085,
"precision": 0.1111111111111111
},
"nuclei_lymphocyte": {
"FN": 208,
"FP": 8,
"TP": 297,
"recall": 0.5881188118811881,
"f1_score": 0.7333333333333333,
"precision": 0.9737704918032787
},
"nuclei_endothelium": {
"FN": 8,
"FP": 0,
"TP": 1,
"recall": 0.1111111111111111,
"f1_score": 0.19999999999999998,
"precision": 1.0
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8068318839673203,
"tissue_tumor": 0.9125864449642526,
"tissue_stroma": 0.8432406939363615,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.27833228093598716
}
},
{
"filename": "final_test_set_metastatic_roi_021.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.46126629497708993
},
"micro": {
"recall": 0.6435897435897436,
"f1_score": 0.7212643678160918,
"precision": 0.8202614379084967
},
"nuclei_tumor": {
"FN": 64,
"FP": 23,
"TP": 173,
"recall": 0.729957805907173,
"f1_score": 0.7990762124711316,
"precision": 0.8826530612244898
},
"nuclei_stroma": {
"FN": 27,
"FP": 7,
"TP": 20,
"recall": 0.425531914893617,
"f1_score": 0.5405405405405406,
"precision": 0.7407407407407407
},
"nuclei_apoptosis": {
"FN": 10,
"FP": 0,
"TP": 1,
"recall": 0.09090909090909091,
"f1_score": 0.16666666666666669,
"precision": 1.0
},
"nuclei_histiocyte": {
"FN": 4,
"FP": 8,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 34,
"FP": 9,
"TP": 56,
"recall": 0.6222222222222222,
"f1_score": 0.7225806451612903,
"precision": 0.8615384615384616
},
"nuclei_endothelium": {
"FN": 0,
"FP": 8,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 0,
"TP": 1,
"recall": 1.0,
"f1_score": 1.0,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.6593857964689565,
"tissue_tumor": 0.900821187740713,
"tissue_stroma": 0.3961077939138428,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 6.90226393780904e-10
}
},
{
"filename": "final_test_set_metastatic_roi_022.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.16366241063729173
},
"micro": {
"recall": 0.698019801980198,
"f1_score": 0.7782888684452621,
"precision": 0.8794178794178794
},
"nuclei_tumor": {
"FN": 179,
"FP": 21,
"TP": 421,
"recall": 0.7016666666666667,
"f1_score": 0.8080614203454894,
"precision": 0.9524886877828054
},
"nuclei_stroma": {
"FN": 2,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 9,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 19,
"TP": 2,
"recall": 1.0,
"f1_score": 0.17391304347826084,
"precision": 0.09523809523809523
},
"nuclei_melanophage": {
"FN": 1,
"FP": 8,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.5874251367153541,
"tissue_tumor": 0.9371256832542928,
"tissue_stroma": 1.5932700271503937e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.631507675977435e-10,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_023.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.13030524695591217
},
"micro": {
"recall": 0.7190860215053764,
"f1_score": 0.7787481804949054,
"precision": 0.8492063492063492
},
"nuclei_tumor": {
"FN": 180,
"FP": 42,
"TP": 523,
"recall": 0.7439544807965861,
"f1_score": 0.8249211356466877,
"precision": 0.9256637168141593
},
"nuclei_stroma": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 15,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 14,
"FP": 31,
"TP": 12,
"recall": 0.46153846153846156,
"f1_score": 0.3478260869565218,
"precision": 0.27906976744186046
},
"nuclei_neutrophil": {
"FN": 3,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_endothelium": {
"FN": 8,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_plasma_cell": {
"FN": 2,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.43567758740727436,
"tissue_tumor": 0.9601447054402454,
"tissue_stroma": 5.569789458856083e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0648493226867754e-09,
"tissue_blood_vessel": 0.21824322997429796
}
},
{
"filename": "final_test_set_metastatic_roi_024.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3350152288984711
},
"micro": {
"recall": 0.7237851662404092,
"f1_score": 0.7265725288831835,
"precision": 0.729381443298969
},
"nuclei_tumor": {
"FN": 31,
"FP": 85,
"TP": 141,
"recall": 0.8197674418604651,
"f1_score": 0.7085427135678392,
"precision": 0.6238938053097345
},
"nuclei_stroma": {
"FN": 3,
"FP": 9,
"TP": 1,
"recall": 0.25,
"f1_score": 0.14285714285714288,
"precision": 0.1
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 8,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 94,
"FP": 41,
"TP": 72,
"recall": 0.43373493975903615,
"f1_score": 0.5161290322580645,
"precision": 0.6371681415929203
},
"nuclei_lymphocyte": {
"FN": 74,
"FP": 65,
"TP": 351,
"recall": 0.8258823529411765,
"f1_score": 0.8347205707491082,
"precision": 0.84375
},
"nuclei_endothelium": {
"FN": 11,
"FP": 1,
"TP": 1,
"recall": 0.08333333333333333,
"f1_score": 0.14285714285714285,
"precision": 0.5
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7799498961982911,
"tissue_tumor": 0.7603634348664057,
"tissue_stroma": 0.7448315794407144,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.3945544666843352
}
},
{
"filename": "final_test_set_metastatic_roi_025.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5164975990248287
},
"micro": {
"recall": 0.6855791962174941,
"f1_score": 0.7369758576874205,
"precision": 0.7967032967032966
},
"nuclei_tumor": {
"FN": 41,
"FP": 24,
"TP": 133,
"recall": 0.764367816091954,
"f1_score": 0.8036253776435045,
"precision": 0.8471337579617835
},
"nuclei_stroma": {
"FN": 5,
"FP": 10,
"TP": 7,
"recall": 0.5833333333333334,
"f1_score": 0.4827586206896552,
"precision": 0.4117647058823529
},
"nuclei_apoptosis": {
"FN": 13,
"FP": 10,
"TP": 4,
"recall": 0.23529411764705882,
"f1_score": 0.2580645161290323,
"precision": 0.2857142857142857
},
"nuclei_histiocyte": {
"FN": 26,
"FP": 8,
"TP": 9,
"recall": 0.2571428571428571,
"f1_score": 0.34615384615384615,
"precision": 0.5294117647058824
},
"nuclei_lymphocyte": {
"FN": 42,
"FP": 22,
"TP": 135,
"recall": 0.7627118644067796,
"f1_score": 0.8083832335329342,
"precision": 0.8598726114649682
},
"nuclei_endothelium": {
"FN": 6,
"FP": 0,
"TP": 2,
"recall": 0.25,
"f1_score": 0.4,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.7865503497396309,
"tissue_tumor": 0.9431364539153448,
"tissue_stroma": 0.7747962249603838,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.2148190698224259
}
},
{
"filename": "final_test_set_metastatic_roi_026.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4096202073114349
},
"micro": {
"recall": 0.59375,
"f1_score": 0.6526717557251908,
"precision": 0.7245762711864406
},
"nuclei_tumor": {
"FN": 68,
"FP": 15,
"TP": 99,
"recall": 0.592814371257485,
"f1_score": 0.7046263345195729,
"precision": 0.868421052631579
},
"nuclei_stroma": {
"FN": 6,
"FP": 4,
"TP": 3,
"recall": 0.3333333333333333,
"f1_score": 0.375,
"precision": 0.42857142857142855
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 19,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 28,
"FP": 7,
"TP": 52,
"recall": 0.65,
"f1_score": 0.7482014388489208,
"precision": 0.8813559322033898
},
"nuclei_endothelium": {
"FN": 4,
"FP": 5,
"TP": 6,
"recall": 0.6,
"f1_score": 0.5714285714285713,
"precision": 0.5454545454545454
},
"nuclei_melanophage": {
"FN": 11,
"FP": 14,
"TP": 11,
"recall": 0.5,
"f1_score": 0.46808510638297873,
"precision": 0.44
}
},
"tissue_metrics": {
"average_dice": 0.5998666744633626,
"tissue_tumor": 0.9139139410921576,
"tissue_stroma": 0.08541943082526242,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.993929225978941e-10
}
},
{
"filename": "final_test_set_metastatic_roi_027.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4022586520947177
},
"micro": {
"recall": 0.8606811145510835,
"f1_score": 0.8540706605222734,
"precision": 0.8475609756097561
},
"nuclei_tumor": {
"FN": 36,
"FP": 31,
"TP": 241,
"recall": 0.8700361010830325,
"f1_score": 0.877959927140255,
"precision": 0.8860294117647058
},
"nuclei_stroma": {
"FN": 1,
"FP": 3,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 3,
"FP": 1,
"TP": 1,
"recall": 0.25,
"f1_score": 0.3333333333333333,
"precision": 0.5
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 13,
"TP": 36,
"recall": 0.8780487804878049,
"f1_score": 0.8,
"precision": 0.7346938775510204
}
},
"tissue_metrics": {
"average_dice": 0.7092044674042225,
"tissue_tumor": 0.9779077778109266,
"tissue_stroma": 0.5681145567574021,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.452783903721403e-09
}
},
{
"filename": "final_test_set_metastatic_roi_028.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.28019432549520445
},
"micro": {
"recall": 0.7045454545454546,
"f1_score": 0.7181467181467182,
"precision": 0.7322834645669292
},
"nuclei_tumor": {
"FN": 76,
"FP": 13,
"TP": 185,
"recall": 0.7088122605363985,
"f1_score": 0.8061002178649237,
"precision": 0.9343434343434344
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 54,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.034482758620689655,
"precision": 0.01818181818181818
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.5998359827200389,
"tissue_tumor": 0.9991796444935287,
"tissue_stroma": 2.6315782548478277e-07,
"tissue_necrosis": 5.948839940815944e-09,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_029.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.42556662709890275
},
"micro": {
"recall": 0.8413597733711048,
"f1_score": 0.8342696629213483,
"precision": 0.8272980501392758
},
"nuclei_tumor": {
"FN": 23,
"FP": 51,
"TP": 284,
"recall": 0.9250814332247557,
"f1_score": 0.8847352024922119,
"precision": 0.8477611940298507
},
"nuclei_stroma": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 25,
"FP": 6,
"TP": 6,
"recall": 0.1935483870967742,
"f1_score": 0.27906976744186046,
"precision": 0.5
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 4,
"TP": 7,
"recall": 0.4666666666666667,
"f1_score": 0.5384615384615385,
"precision": 0.6363636363636364
}
},
"tissue_metrics": {
"average_dice": 1.0,
"tissue_tumor": 1.0,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_030.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4654369388497134
},
"micro": {
"recall": 0.8301526717557252,
"f1_score": 0.8413926499032882,
"precision": 0.8529411764705882
},
"nuclei_tumor": {
"FN": 41,
"FP": 43,
"TP": 325,
"recall": 0.8879781420765027,
"f1_score": 0.885558583106267,
"precision": 0.8831521739130435
},
"nuclei_apoptosis": {
"FN": 5,
"FP": 1,
"TP": 1,
"recall": 0.16666666666666666,
"f1_score": 0.25,
"precision": 0.5
},
"nuclei_histiocyte": {
"FN": 14,
"FP": 19,
"TP": 7,
"recall": 0.3333333333333333,
"f1_score": 0.2978723404255319,
"precision": 0.2692307692307692
},
"nuclei_lymphocyte": {
"FN": 17,
"FP": 12,
"TP": 99,
"recall": 0.853448275862069,
"f1_score": 0.8722466960352423,
"precision": 0.8918918918918919
},
"nuclei_endothelium": {
"FN": 10,
"FP": 0,
"TP": 2,
"recall": 0.16666666666666666,
"f1_score": 0.2857142857142857,
"precision": 1.0
},
"nuclei_melanophage": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 1,
"recall": 0.5,
"f1_score": 0.6666666666666666,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.6573904844749332,
"tissue_tumor": 0.9580875402952557,
"tissue_stroma": 0.9071127496344509,
"tissue_necrosis": 1.0,
"tissue_epidermis": 2.124314907990756e-10,
"tissue_blood_vessel": 0.4217521322325277
}
},
{
"filename": "final_test_set_metastatic_roi_031.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4512308844250049
},
"micro": {
"recall": 0.7487437185929648,
"f1_score": 0.7760416666666667,
"precision": 0.8054054054054054
},
"nuclei_tumor": {
"FN": 77,
"FP": 62,
"TP": 257,
"recall": 0.7694610778443114,
"f1_score": 0.7871362940275651,
"precision": 0.8056426332288401
},
"nuclei_stroma": {
"FN": 29,
"FP": 4,
"TP": 9,
"recall": 0.23684210526315788,
"f1_score": 0.35294117647058826,
"precision": 0.6923076923076923
},
"nuclei_histiocyte": {
"FN": 62,
"FP": 24,
"TP": 16,
"recall": 0.20512820512820512,
"f1_score": 0.27118644067796605,
"precision": 0.4
},
"nuclei_lymphocyte": {
"FN": 82,
"FP": 88,
"TP": 463,
"recall": 0.8495412844036697,
"f1_score": 0.844890510948905,
"precision": 0.8402903811252269
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.9438841794318698,
"tissue_tumor": 0.8567107308364067,
"tissue_stroma": 0.8627101663229428,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_032.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.28768416672290076
},
"micro": {
"recall": 0.7308319738988581,
"f1_score": 0.7757575757575759,
"precision": 0.8265682656826568
},
"nuclei_tumor": {
"FN": 58,
"FP": 30,
"TP": 188,
"recall": 0.7642276422764228,
"f1_score": 0.8103448275862069,
"precision": 0.8623853211009175
},
"nuclei_stroma": {
"FN": 9,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 7,
"FP": 47,
"TP": 8,
"recall": 0.5333333333333333,
"f1_score": 0.2285714285714286,
"precision": 0.14545454545454545
},
"nuclei_lymphocyte": {
"FN": 75,
"FP": 15,
"TP": 247,
"recall": 0.7670807453416149,
"f1_score": 0.8458904109589042,
"precision": 0.9427480916030534
},
"nuclei_neutrophil": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_endothelium": {
"FN": 13,
"FP": 1,
"TP": 5,
"recall": 0.2777777777777778,
"f1_score": 0.4166666666666667,
"precision": 0.8333333333333334
},
"nuclei_plasma_cell": {
"FN": 2,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.5701962361795576,
"tissue_tumor": 0.9650906759019023,
"tissue_stroma": 0.8858904926574667,
"tissue_necrosis": 7.777259287776281e-10,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.1560693507968863e-08
}
},
{
"filename": "final_test_set_metastatic_roi_033.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4130092118730809
},
"micro": {
"recall": 0.8475836431226765,
"f1_score": 0.8914956011730206,
"precision": 0.9402061855670103
},
"nuclei_tumor": {
"FN": 56,
"FP": 27,
"TP": 447,
"recall": 0.8886679920477137,
"f1_score": 0.9150460593654043,
"precision": 0.9430379746835443
},
"nuclei_stroma": {
"FN": 6,
"FP": 0,
"TP": 1,
"recall": 0.14285714285714285,
"f1_score": 0.25,
"precision": 1.0
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 2,
"TP": 5,
"recall": 0.2777777777777778,
"f1_score": 0.4,
"precision": 0.7142857142857143
},
"nuclei_endothelium": {
"FN": 6,
"FP": 0,
"TP": 3,
"recall": 0.3333333333333333,
"f1_score": 0.5,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.9433146244339227,
"tissue_tumor": 0.9950255903744517,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7215475317951618
}
},
{
"filename": "final_test_set_metastatic_roi_034.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3516145283973485
},
"micro": {
"recall": 0.7428571428571429,
"f1_score": 0.7547169811320755,
"precision": 0.7669616519174042
},
"nuclei_tumor": {
"FN": 167,
"FP": 51,
"TP": 508,
"recall": 0.7525925925925926,
"f1_score": 0.8233387358184765,
"precision": 0.9087656529516994
},
"nuclei_stroma": {
"FN": 1,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 7,
"FP": 3,
"TP": 3,
"recall": 0.3,
"f1_score": 0.37499999999999994,
"precision": 0.5
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 3,
"FP": 91,
"TP": 7,
"recall": 0.7,
"f1_score": 0.12962962962962962,
"precision": 0.07142857142857142
},
"nuclei_endothelium": {
"FN": 2,
"FP": 11,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.13333333333333333,
"precision": 0.08333333333333333
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 0,
"TP": 1,
"recall": 1.0,
"f1_score": 1.0,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.5167096769093162,
"tissue_tumor": 0.9237772685559245,
"tissue_stroma": 2.5374914353225175e-10,
"tissue_necrosis": 1.5785319650231206e-10,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6597711155790544
}
},
{
"filename": "final_test_set_metastatic_roi_035.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3942131780480114
},
"micro": {
"recall": 0.6742857142857143,
"f1_score": 0.6647887323943662,
"precision": 0.6555555555555556
},
"nuclei_tumor": {
"FN": 52,
"FP": 77,
"TP": 181,
"recall": 0.776824034334764,
"f1_score": 0.7372708757637475,
"precision": 0.7015503875968992
},
"nuclei_stroma": {
"FN": 7,
"FP": 8,
"TP": 3,
"recall": 0.3,
"f1_score": 0.28571428571428564,
"precision": 0.2727272727272727
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 6,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 5,
"FP": 24,
"TP": 1,
"recall": 0.16666666666666666,
"f1_score": 0.06451612903225806,
"precision": 0.04
},
"nuclei_lymphocyte": {
"FN": 25,
"FP": 4,
"TP": 29,
"recall": 0.5370370370370371,
"f1_score": 0.6666666666666667,
"precision": 0.8787878787878788
},
"nuclei_melanophage": {
"FN": 23,
"FP": 5,
"TP": 22,
"recall": 0.4888888888888889,
"f1_score": 0.611111111111111,
"precision": 0.8148148148148148
}
},
"tissue_metrics": {
"average_dice": 0.7724945171020945,
"tissue_tumor": 0.9401490597956169,
"tissue_stroma": 0.9223235251918979,
"tissue_necrosis": 1.0,
"tissue_epidermis": 5.229578493238376e-10,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_036.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3600246401384531
},
"micro": {
"recall": 0.7369791666666666,
"f1_score": 0.7457180500658761,
"precision": 0.7546666666666667
},
"nuclei_tumor": {
"FN": 46,
"FP": 26,
"TP": 137,
"recall": 0.7486338797814208,
"f1_score": 0.791907514450867,
"precision": 0.8404907975460123
},
"nuclei_stroma": {
"FN": 2,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 6,
"FP": 5,
"TP": 3,
"recall": 0.3333333333333333,
"f1_score": 0.35294117647058826,
"precision": 0.375
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 12,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 27,
"FP": 39,
"TP": 130,
"recall": 0.8280254777070064,
"f1_score": 0.7975460122699387,
"precision": 0.7692307692307693
},
"nuclei_endothelium": {
"FN": 2,
"FP": 7,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 18,
"FP": 1,
"TP": 13,
"recall": 0.41935483870967744,
"f1_score": 0.5777777777777778,
"precision": 0.9285714285714286
}
},
"tissue_metrics": {
"average_dice": 0.7519027263301934,
"tissue_tumor": 0.9588277133547846,
"tissue_stroma": 0.8006859172663164,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0298661163441133e-09
}
},
{
"filename": "final_test_set_metastatic_roi_037.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.18377535101404058
},
"micro": {
"recall": 0.9019908116385911,
"f1_score": 0.9040675364543361,
"precision": 0.9061538461538462
},
"nuclei_tumor": {
"FN": 45,
"FP": 59,
"TP": 589,
"recall": 0.9290220820189274,
"f1_score": 0.9188767550702029,
"precision": 0.9089506172839507
},
"nuclei_stroma": {
"FN": 4,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_apoptosis": {
"FN": 3,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_endothelium": {
"FN": 2,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.610253120034878,
"tissue_tumor": 0.9945101454641462,
"tissue_stroma": 5.854800902489457e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.05675544885544266
}
},
{
"filename": "final_test_set_metastatic_roi_038.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.40782281691372607
},
"micro": {
"recall": 0.7880085653104925,
"f1_score": 0.8132596685082872,
"precision": 0.8401826484018264
},
"nuclei_tumor": {
"FN": 62,
"FP": 61,
"TP": 362,
"recall": 0.8537735849056604,
"f1_score": 0.8547815820543093,
"precision": 0.8557919621749409
},
"nuclei_apoptosis": {
"FN": 22,
"FP": 4,
"TP": 5,
"recall": 0.18518518518518517,
"f1_score": 0.2777777777777778,
"precision": 0.5555555555555556
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 5,
"TP": 1,
"recall": 0.0625,
"f1_score": 0.09090909090909091,
"precision": 0.16666666666666666
}
},
"tissue_metrics": {
"average_dice": 1.0,
"tissue_tumor": 1.0,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_039.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.30755020412167616
},
"micro": {
"recall": 0.5459662288930581,
"f1_score": 0.5993820803295571,
"precision": 0.6643835616438356
},
"nuclei_tumor": {
"FN": 66,
"FP": 57,
"TP": 159,
"recall": 0.7066666666666667,
"f1_score": 0.7210884353741497,
"precision": 0.7361111111111112
},
"nuclei_stroma": {
"FN": 25,
"FP": 20,
"TP": 13,
"recall": 0.34210526315789475,
"f1_score": 0.3661971830985915,
"precision": 0.3939393939393939
},
"nuclei_apoptosis": {
"FN": 4,
"FP": 7,
"TP": 1,
"recall": 0.2,
"f1_score": 0.15384615384615385,
"precision": 0.125
},
"nuclei_histiocyte": {
"FN": 104,
"FP": 29,
"TP": 11,
"recall": 0.09565217391304348,
"f1_score": 0.14193548387096774,
"precision": 0.275
},
"nuclei_lymphocyte": {
"FN": 33,
"FP": 31,
"TP": 107,
"recall": 0.7642857142857142,
"f1_score": 0.7697841726618705,
"precision": 0.7753623188405797
},
"nuclei_endothelium": {
"FN": 5,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 5,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8181501701100029,
"tissue_tumor": 0.5498129505686112,
"tissue_stroma": 0.5409378999814036,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_040.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.40703074300170483
},
"micro": {
"recall": 0.702258726899384,
"f1_score": 0.7558011049723757,
"precision": 0.8181818181818182
},
"nuclei_tumor": {
"FN": 94,
"FP": 49,
"TP": 291,
"recall": 0.7558441558441559,
"f1_score": 0.8027586206896551,
"precision": 0.8558823529411764
},
"nuclei_stroma": {
"FN": 4,
"FP": 3,
"TP": 2,
"recall": 0.3333333333333333,
"f1_score": 0.3636363636363636,
"precision": 0.4
},
"nuclei_apoptosis": {
"FN": 19,
"FP": 2,
"TP": 2,
"recall": 0.09523809523809523,
"f1_score": 0.16,
"precision": 0.5
},
"nuclei_histiocyte": {
"FN": 8,
"FP": 7,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 13,
"TP": 44,
"recall": 0.8301886792452831,
"f1_score": 0.8,
"precision": 0.7719298245614035
},
"nuclei_endothelium": {
"FN": 11,
"FP": 2,
"TP": 3,
"recall": 0.21428571428571427,
"f1_score": 0.3157894736842105,
"precision": 0.6
}
},
"tissue_metrics": {
"average_dice": 0.8756103738358011,
"tissue_tumor": 0.9847241360457081,
"tissue_stroma": 0.5083520530497488,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.884975680083549
}
},
{
"filename": "final_test_set_metastatic_roi_041.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4509193095559367
},
"micro": {
"recall": 0.7131147540983607,
"f1_score": 0.7478510028653295,
"precision": 0.786144578313253
},
"nuclei_tumor": {
"FN": 53,
"FP": 17,
"TP": 181,
"recall": 0.7735042735042735,
"f1_score": 0.837962962962963,
"precision": 0.9141414141414141
},
"nuclei_stroma": {
"FN": 11,
"FP": 2,
"TP": 2,
"recall": 0.15384615384615385,
"f1_score": 0.23529411764705882,
"precision": 0.5
},
"nuclei_apoptosis": {
"FN": 7,
"FP": 14,
"TP": 4,
"recall": 0.36363636363636365,
"f1_score": 0.27586206896551724,
"precision": 0.2222222222222222
},
"nuclei_histiocyte": {
"FN": 23,
"FP": 0,
"TP": 5,
"recall": 0.17857142857142858,
"f1_score": 0.30303030303030304,
"precision": 1.0
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 34,
"TP": 66,
"recall": 0.88,
"f1_score": 0.7542857142857142,
"precision": 0.66
},
"nuclei_endothelium": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 2,
"FP": 0,
"TP": 3,
"recall": 0.6,
"f1_score": 0.7499999999999999,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.7088427537149725,
"tissue_tumor": 0.9000572623875909,
"tissue_stroma": 0.5709502485069313,
"tissue_necrosis": 0.07320625768034018,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_042.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2119819085068242
},
"micro": {
"recall": 0.517921146953405,
"f1_score": 0.5366759517177344,
"precision": 0.5568400770712909
},
"nuclei_tumor": {
"FN": 16,
"FP": 124,
"TP": 98,
"recall": 0.8596491228070176,
"f1_score": 0.5833333333333334,
"precision": 0.44144144144144143
},
"nuclei_stroma": {
"FN": 8,
"FP": 20,
"TP": 2,
"recall": 0.2,
"f1_score": 0.12500000000000003,
"precision": 0.09090909090909091
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 123,
"FP": 8,
"TP": 17,
"recall": 0.12142857142857143,
"f1_score": 0.20606060606060606,
"precision": 0.68
},
"nuclei_lymphocyte": {
"FN": 64,
"FP": 73,
"TP": 167,
"recall": 0.7229437229437229,
"f1_score": 0.7091295116772822,
"precision": 0.6958333333333333
},
"nuclei_neutrophil": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_endothelium": {
"FN": 28,
"FP": 2,
"TP": 2,
"recall": 0.06666666666666667,
"f1_score": 0.11764705882352941,
"precision": 0.5
},
"nuclei_melanophage": {
"FN": 28,
"FP": 2,
"TP": 3,
"recall": 0.0967741935483871,
"f1_score": 0.16666666666666666,
"precision": 0.6
}
},
"tissue_metrics": {
"average_dice": 0.7020427316737367,
"tissue_tumor": 0.6100850418346023,
"tissue_stroma": 0.6847524423765391,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.21537617415754184
}
},
{
"filename": "final_test_set_metastatic_roi_043.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.25551061678463094
},
"micro": {
"recall": 0.7058823529411765,
"f1_score": 0.6811352253756261,
"precision": 0.6580645161290323
},
"nuclei_tumor": {
"FN": 64,
"FP": 62,
"TP": 195,
"recall": 0.752895752895753,
"f1_score": 0.7558139534883721,
"precision": 0.7587548638132295
},
"nuclei_stroma": {
"FN": 2,
"FP": 6,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 1,
"FP": 5,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 2,
"FP": 15,
"TP": 3,
"recall": 0.6,
"f1_score": 0.2608695652173913,
"precision": 0.16666666666666666
},
"nuclei_melanophage": {
"FN": 16,
"FP": 18,
"TP": 6,
"recall": 0.2727272727272727,
"f1_score": 0.2608695652173913,
"precision": 0.25
}
},
"tissue_metrics": {
"average_dice": 0.6000882611655125,
"tissue_tumor": 0.8114068744452302,
"tissue_stroma": 0.18903443076167695,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 6.206554117299806e-10
}
},
{
"filename": "final_test_set_metastatic_roi_044.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.34664061031981663
},
"micro": {
"recall": 0.8307086614173228,
"f1_score": 0.8533872598584429,
"precision": 0.8773388773388774
},
"nuclei_tumor": {
"FN": 63,
"FP": 37,
"TP": 401,
"recall": 0.8642241379310345,
"f1_score": 0.8891352549889135,
"precision": 0.9155251141552512
},
"nuclei_stroma": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 8,
"FP": 8,
"TP": 2,
"recall": 0.2,
"f1_score": 0.20000000000000004,
"precision": 0.2
},
"nuclei_histiocyte": {
"FN": 7,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 13,
"TP": 19,
"recall": 0.7037037037037037,
"f1_score": 0.6440677966101694,
"precision": 0.59375
}
},
"tissue_metrics": {
"average_dice": 0.7931775050854684,
"tissue_tumor": 0.9601898019162685,
"tissue_stroma": 0.0056977235110736825,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_045.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.36014803017162766
},
"micro": {
"recall": 0.782608695652174,
"f1_score": 0.777408637873754,
"precision": 0.7722772277227723
},
"nuclei_tumor": {
"FN": 82,
"FP": 59,
"TP": 307,
"recall": 0.7892030848329049,
"f1_score": 0.8132450331125828,
"precision": 0.8387978142076503
},
"nuclei_stroma": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 3,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 40,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 40,
"FP": 29,
"TP": 154,
"recall": 0.7938144329896907,
"f1_score": 0.816976127320955,
"precision": 0.8415300546448088
},
"nuclei_neutrophil": {
"FN": 1,
"FP": 0,
"TP": 4,
"recall": 0.8,
"f1_score": 0.888888888888889,
"precision": 1.0
},
"nuclei_endothelium": {
"FN": 1,
"FP": 3,
"TP": 2,
"recall": 0.6666666666666666,
"f1_score": 0.5,
"precision": 0.4
},
"nuclei_melanophage": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 6,
"FP": 1,
"TP": 1,
"recall": 0.14285714285714285,
"f1_score": 0.22222222222222224,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.6892532445188924,
"tissue_tumor": 0.95890372251178,
"tissue_stroma": 0.01831752887586229,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.46904497120681976
}
},
{
"filename": "final_test_set_metastatic_roi_046.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.19210350606241947
},
"micro": {
"recall": 0.038135593220338986,
"f1_score": 0.04687500000000001,
"precision": 0.060810810810810814
},
"nuclei_tumor": {
"FN": 4,
"FP": 131,
"TP": 1,
"recall": 0.2,
"f1_score": 0.014598540145985403,
"precision": 0.007575757575757576
},
"nuclei_stroma": {
"FN": 2,
"FP": 4,
"TP": 2,
"recall": 0.5,
"f1_score": 0.4,
"precision": 0.3333333333333333
},
"nuclei_apoptosis": {
"FN": 109,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 1,
"TP": 4,
"recall": 1.0,
"f1_score": 0.888888888888889,
"precision": 0.8
},
"nuclei_endothelium": {
"FN": 19,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_melanophage": {
"FN": 93,
"FP": 0,
"TP": 2,
"recall": 0.021052631578947368,
"f1_score": 0.041237113402061855,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.3308021939875915,
"tissue_tumor": 1.0396685536542825e-11,
"tissue_stroma": 0.09505246815803177,
"tissue_necrosis": 0.004765181155143175,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5541933206143859
}
},
{
"filename": "final_test_set_metastatic_roi_047.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.15235960558658163
},
"micro": {
"recall": 0.37435897435897436,
"f1_score": 0.3847167325428196,
"precision": 0.3956639566395664
},
"nuclei_tumor": {
"FN": 14,
"FP": 190,
"TP": 129,
"recall": 0.9020979020979021,
"f1_score": 0.5584415584415584,
"precision": 0.4043887147335423
},
"nuclei_apoptosis": {
"FN": 138,
"FP": 31,
"TP": 14,
"recall": 0.09210526315789473,
"f1_score": 0.14213197969543145,
"precision": 0.3111111111111111
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_neutrophil": {
"FN": 92,
"FP": 0,
"TP": 3,
"recall": 0.031578947368421054,
"f1_score": 0.061224489795918366,
"precision": 1.0
},
"nuclei_endothelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.2851234211857957,
"tissue_tumor": 0.4256171042947499,
"tissue_stroma": 1.196458481459131e-09,
"tissue_necrosis": 1.2852793104568363e-11,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 4.2491714097691974e-10
}
},
{
"filename": "final_test_set_primary_roi_001.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3253349282029777
},
"micro": {
"recall": 0.5647668393782384,
"f1_score": 0.6312741312741312,
"precision": 0.7155361050328227
},
"nuclei_tumor": {
"FN": 0,
"FP": 47,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_stroma": {
"FN": 5,
"FP": 25,
"TP": 7,
"recall": 0.5833333333333334,
"f1_score": 0.31818181818181823,
"precision": 0.21875
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 5,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 91,
"FP": 28,
"TP": 65,
"recall": 0.4166666666666667,
"f1_score": 0.5220883534136547,
"precision": 0.6989247311827957
},
"nuclei_lymphocyte": {
"FN": 110,
"FP": 17,
"TP": 240,
"recall": 0.6857142857142857,
"f1_score": 0.7907742998352554,
"precision": 0.933852140077821
},
"nuclei_endothelium": {
"FN": 21,
"FP": 4,
"TP": 9,
"recall": 0.3,
"f1_score": 0.41860465116279066,
"precision": 0.6923076923076923
},
"nuclei_melanophage": {
"FN": 20,
"FP": 3,
"TP": 5,
"recall": 0.2,
"f1_score": 0.30303030303030304,
"precision": 0.625
},
"nuclei_plasma_cell": {
"FN": 5,
"FP": 1,
"TP": 1,
"recall": 0.16666666666666666,
"f1_score": 0.25,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.5077051387750332,
"tissue_tumor": 5.274762371676913e-11,
"tissue_stroma": 0.8722280171477627,
"tissue_necrosis": 1.2863390773265514e-09,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6662976753883166
}
},
{
"filename": "final_test_set_primary_roi_002.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3715378333428293
},
"micro": {
"recall": 0.524904214559387,
"f1_score": 0.5535353535353535,
"precision": 0.5854700854700855
},
"nuclei_tumor": {
"FN": 10,
"FP": 36,
"TP": 28,
"recall": 0.7368421052631579,
"f1_score": 0.5490196078431372,
"precision": 0.4375
},
"nuclei_stroma": {
"FN": 7,
"FP": 8,
"TP": 9,
"recall": 0.5625,
"f1_score": 0.5454545454545455,
"precision": 0.5294117647058824
},
"nuclei_epithelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 89,
"FP": 14,
"TP": 58,
"recall": 0.3945578231292517,
"f1_score": 0.5296803652968037,
"precision": 0.8055555555555556
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 25,
"TP": 35,
"recall": 0.7291666666666666,
"f1_score": 0.6481481481481481,
"precision": 0.5833333333333334
},
"nuclei_endothelium": {
"FN": 0,
"FP": 11,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 4,
"FP": 2,
"TP": 7,
"recall": 0.6363636363636364,
"f1_score": 0.7000000000000001,
"precision": 0.7777777777777778
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.43892140950793107,
"tissue_tumor": 0.40409943167071277,
"tissue_stroma": 0.790507614570825,
"tissue_necrosis": 1.0,
"tissue_epidermis": 6.941070308224426e-10,
"tissue_blood_vessel": 6.040106302222695e-10
}
},
{
"filename": "final_test_set_primary_roi_003.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.40712354674841766
},
"micro": {
"recall": 0.6128048780487805,
"f1_score": 0.6579378068739771,
"precision": 0.7102473498233216
},
"nuclei_tumor": {
"FN": 28,
"FP": 50,
"TP": 57,
"recall": 0.6705882352941176,
"f1_score": 0.5937499999999999,
"precision": 0.5327102803738317
},
"nuclei_stroma": {
"FN": 4,
"FP": 17,
"TP": 3,
"recall": 0.42857142857142855,
"f1_score": 0.2222222222222222,
"precision": 0.15
},
"nuclei_epithelium": {
"FN": 34,
"FP": 0,
"TP": 4,
"recall": 0.10526315789473684,
"f1_score": 0.1904761904761905,
"precision": 1.0
},
"nuclei_histiocyte": {
"FN": 67,
"FP": 35,
"TP": 65,
"recall": 0.49242424242424243,
"f1_score": 0.5603448275862069,
"precision": 0.65
},
"nuclei_lymphocyte": {
"FN": 62,
"FP": 37,
"TP": 247,
"recall": 0.7993527508090615,
"f1_score": 0.8330522765598651,
"precision": 0.8697183098591549
},
"nuclei_endothelium": {
"FN": 9,
"FP": 13,
"TP": 11,
"recall": 0.55,
"f1_score": 0.5,
"precision": 0.4583333333333333
},
"nuclei_melanophage": {
"FN": 42,
"FP": 12,
"TP": 15,
"recall": 0.2631578947368421,
"f1_score": 0.35714285714285715,
"precision": 0.5555555555555556
},
"nuclei_plasma_cell": {
"FN": 8,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.8086830485803602,
"tissue_tumor": 0.6816724117702899,
"tissue_stroma": 0.9069082355619844,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.7669883512081402,
"tissue_blood_vessel": 0.6878462443613869
}
},
{
"filename": "final_test_set_primary_roi_004.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.27020813011240113
},
"micro": {
"recall": 0.4592074592074592,
"f1_score": 0.5057766367137355,
"precision": 0.5628571428571428
},
"nuclei_tumor": {
"FN": 180,
"FP": 14,
"TP": 79,
"recall": 0.305019305019305,
"f1_score": 0.4488636363636364,
"precision": 0.8494623655913979
},
"nuclei_stroma": {
"FN": 1,
"FP": 18,
"TP": 1,
"recall": 0.5,
"f1_score": 0.09523809523809525,
"precision": 0.05263157894736842
},
"nuclei_apoptosis": {
"FN": 15,
"FP": 0,
"TP": 3,
"recall": 0.16666666666666666,
"f1_score": 0.2857142857142857,
"precision": 1.0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 60,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 58,
"TP": 109,
"recall": 0.8790322580645161,
"f1_score": 0.7491408934707905,
"precision": 0.6526946107784432
},
"nuclei_endothelium": {
"FN": 21,
"FP": 1,
"TP": 5,
"recall": 0.19230769230769232,
"f1_score": 0.3125,
"precision": 0.8333333333333334
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.6803988875835721,
"tissue_tumor": 0.7519500377996116,
"tissue_stroma": 2.5292891685080915e-11,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6500444000929565
}
},
{
"filename": "final_test_set_primary_roi_005.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4577968335936721
},
"micro": {
"recall": 0.806941431670282,
"f1_score": 0.8294314381270904,
"precision": 0.8532110091743119
},
"nuclei_tumor": {
"FN": 36,
"FP": 15,
"TP": 315,
"recall": 0.8974358974358975,
"f1_score": 0.9251101321585904,
"precision": 0.9545454545454546
},
"nuclei_stroma": {
"FN": 17,
"FP": 6,
"TP": 7,
"recall": 0.2916666666666667,
"f1_score": 0.3783783783783784,
"precision": 0.5384615384615384
},
"nuclei_histiocyte": {
"FN": 11,
"FP": 9,
"TP": 5,
"recall": 0.3125,
"f1_score": 0.3333333333333333,
"precision": 0.35714285714285715
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 11,
"TP": 32,
"recall": 0.7619047619047619,
"f1_score": 0.7529411764705882,
"precision": 0.7441860465116279
},
"nuclei_endothelium": {
"FN": 12,
"FP": 8,
"TP": 8,
"recall": 0.4,
"f1_score": 0.4444444444444445,
"precision": 0.5
},
"nuclei_melanophage": {
"FN": 2,
"FP": 15,
"TP": 5,
"recall": 0.7142857142857143,
"f1_score": 0.37037037037037035,
"precision": 0.25
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.659217430064087,
"tissue_tumor": 0.8647064930866807,
"tissue_stroma": 0.8759799601699454,
"tissue_necrosis": 1.0,
"tissue_epidermis": 9.642178745779892e-11,
"tissue_blood_vessel": 0.5554006969673866
}
},
{
"filename": "final_test_set_primary_roi_006.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4589969289348212
},
"micro": {
"recall": 0.633045148895293,
"f1_score": 0.6900523560209424,
"precision": 0.7583429228998849
},
"nuclei_tumor": {
"FN": 56,
"FP": 97,
"TP": 84,
"recall": 0.6,
"f1_score": 0.5233644859813084,
"precision": 0.46408839779005523
},
"nuclei_stroma": {
"FN": 11,
"FP": 15,
"TP": 9,
"recall": 0.45,
"f1_score": 0.4090909090909091,
"precision": 0.375
},
"nuclei_histiocyte": {
"FN": 48,
"FP": 69,
"TP": 32,
"recall": 0.4,
"f1_score": 0.3535911602209945,
"precision": 0.31683168316831684
},
"nuclei_lymphocyte": {
"FN": 260,
"FP": 29,
"TP": 533,
"recall": 0.6721311475409836,
"f1_score": 0.7867158671586716,
"precision": 0.9483985765124555
},
"nuclei_endothelium": {
"FN": 7,
"FP": 0,
"TP": 1,
"recall": 0.125,
"f1_score": 0.2222222222222222,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.7651932272166924,
"tissue_tumor": 0.8225378303489148,
"tissue_stroma": 0.9239967418448177,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.07943156388972956
}
},
{
"filename": "final_test_set_primary_roi_007.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.31921872435682164
},
"micro": {
"recall": 0.554093567251462,
"f1_score": 0.6429177268871926,
"precision": 0.7656565656565657
},
"nuclei_tumor": {
"FN": 209,
"FP": 21,
"TP": 275,
"recall": 0.5681818181818182,
"f1_score": 0.7051282051282052,
"precision": 0.9290540540540541
},
"nuclei_stroma": {
"FN": 10,
"FP": 24,
"TP": 7,
"recall": 0.4117647058823529,
"f1_score": 0.29166666666666663,
"precision": 0.22580645161290322
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 50,
"FP": 15,
"TP": 88,
"recall": 0.6376811594202898,
"f1_score": 0.7302904564315353,
"precision": 0.8543689320388349
},
"nuclei_histiocyte": {
"FN": 4,
"FP": 3,
"TP": 5,
"recall": 0.5555555555555556,
"f1_score": 0.5882352941176471,
"precision": 0.625
},
"nuclei_lymphocyte": {
"FN": 12,
"FP": 46,
"TP": 2,
"recall": 0.14285714285714285,
"f1_score": 0.06451612903225806,
"precision": 0.041666666666666664
},
"nuclei_endothelium": {
"FN": 18,
"FP": 1,
"TP": 2,
"recall": 0.1,
"f1_score": 0.1739130434782609,
"precision": 0.6666666666666666
},
"nuclei_melanophage": {
"FN": 2,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.700487081794331,
"tissue_tumor": 0.837424561323482,
"tissue_stroma": 0.6397215160808775,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.8932944513136024,
"tissue_blood_vessel": 0.13199488025369321
}
},
{
"filename": "final_test_set_primary_roi_008.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.47004233689016295
},
"micro": {
"recall": 0.7185185185185186,
"f1_score": 0.751937984496124,
"precision": 0.7886178861788617
},
"nuclei_tumor": {
"FN": 16,
"FP": 12,
"TP": 124,
"recall": 0.8857142857142857,
"f1_score": 0.8985507246376812,
"precision": 0.9117647058823529
},
"nuclei_stroma": {
"FN": 12,
"FP": 8,
"TP": 10,
"recall": 0.45454545454545453,
"f1_score": 0.5,
"precision": 0.5555555555555556
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 19,
"FP": 20,
"TP": 26,
"recall": 0.5777777777777777,
"f1_score": 0.5714285714285713,
"precision": 0.5652173913043478
},
"nuclei_lymphocyte": {
"FN": 17,
"FP": 8,
"TP": 33,
"recall": 0.66,
"f1_score": 0.7252747252747254,
"precision": 0.8048780487804879
},
"nuclei_endothelium": {
"FN": 12,
"FP": 2,
"TP": 1,
"recall": 0.07692307692307693,
"f1_score": 0.125,
"precision": 0.3333333333333333
}
},
"tissue_metrics": {
"average_dice": 0.8657870404917727,
"tissue_tumor": 0.9557274798925106,
"tissue_stroma": 0.8775391461710996,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.4956685763952534
}
},
{
"filename": "final_test_set_primary_roi_009.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3674466262109575
},
"micro": {
"recall": 0.48036253776435045,
"f1_score": 0.5678571428571428,
"precision": 0.6943231441048034
},
"nuclei_tumor": {
"FN": 27,
"FP": 17,
"TP": 39,
"recall": 0.5909090909090909,
"f1_score": 0.6393442622950819,
"precision": 0.6964285714285714
},
"nuclei_stroma": {
"FN": 5,
"FP": 29,
"TP": 14,
"recall": 0.7368421052631579,
"f1_score": 0.45161290322580644,
"precision": 0.32558139534883723
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 55,
"FP": 13,
"TP": 38,
"recall": 0.40860215053763443,
"f1_score": 0.5277777777777778,
"precision": 0.7450980392156863
},
"nuclei_histiocyte": {
"FN": 48,
"FP": 0,
"TP": 12,
"recall": 0.2,
"f1_score": 0.33333333333333337,
"precision": 1.0
},
"nuclei_lymphocyte": {
"FN": 22,
"FP": 9,
"TP": 54,
"recall": 0.7105263157894737,
"f1_score": 0.776978417266187,
"precision": 0.8571428571428571
},
"nuclei_endothelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 15,
"FP": 0,
"TP": 2,
"recall": 0.11764705882352941,
"f1_score": 0.21052631578947367,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.7040175723489475,
"tissue_tumor": 0.6940552935780948,
"tissue_stroma": 0.9610665843920283,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.8649659827458072,
"tissue_blood_vessel": 1.028806583303697e-09
}
},
{
"filename": "final_test_set_primary_roi_010.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.29966052283135297
},
"micro": {
"recall": 0.7098540145985401,
"f1_score": 0.7480769230769231,
"precision": 0.790650406504065
},
"nuclei_tumor": {
"FN": 117,
"FP": 49,
"TP": 266,
"recall": 0.6945169712793734,
"f1_score": 0.7621776504297995,
"precision": 0.8444444444444444
},
"nuclei_stroma": {
"FN": 1,
"FP": 4,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 1,
"FP": 21,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 17,
"FP": 25,
"TP": 121,
"recall": 0.8768115942028986,
"f1_score": 0.8521126760563381,
"precision": 0.8287671232876712
},
"nuclei_endothelium": {
"FN": 21,
"FP": 1,
"TP": 1,
"recall": 0.045454545454545456,
"f1_score": 0.08333333333333334,
"precision": 0.5
},
"nuclei_plasma_cell": {
"FN": 2,
"FP": 1,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.4,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.6075417749766171,
"tissue_tumor": 0.9379940650052029,
"tissue_stroma": 1.1512911729180291e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.0997148097627534
}
},
{
"filename": "final_test_set_primary_roi_011.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2783999470134468
},
"micro": {
"recall": 0.7477678571428571,
"f1_score": 0.7995226730310263,
"precision": 0.8589743589743589
},
"nuclei_tumor": {
"FN": 110,
"FP": 21,
"TP": 321,
"recall": 0.7447795823665894,
"f1_score": 0.8305304010349288,
"precision": 0.9385964912280702
},
"nuclei_stroma": {
"FN": 2,
"FP": 13,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.11764705882352941,
"precision": 0.07142857142857142
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 5,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 9,
"TP": 13,
"recall": 0.9285714285714286,
"f1_score": 0.7222222222222223,
"precision": 0.5909090909090909
},
"nuclei_endothelium": {
"FN": 0,
"FP": 5,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.6704786748561802,
"tissue_tumor": 0.9451088853401669,
"tissue_stroma": 0.4072844864654868,
"tissue_necrosis": 1.0,
"tissue_epidermis": 2.475247518625625e-09,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_012.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5286752342073944
},
"micro": {
"recall": 0.5770114942528736,
"f1_score": 0.6197530864197531,
"precision": 0.6693333333333333
},
"nuclei_tumor": {
"FN": 18,
"FP": 16,
"TP": 56,
"recall": 0.7567567567567568,
"f1_score": 0.7671232876712328,
"precision": 0.7777777777777778
},
"nuclei_stroma": {
"FN": 11,
"FP": 30,
"TP": 8,
"recall": 0.42105263157894735,
"f1_score": 0.2807017543859649,
"precision": 0.21052631578947367
},
"nuclei_histiocyte": {
"FN": 46,
"FP": 37,
"TP": 28,
"recall": 0.3783783783783784,
"f1_score": 0.4028776978417266,
"precision": 0.4307692307692308
},
"nuclei_lymphocyte": {
"FN": 42,
"FP": 16,
"TP": 117,
"recall": 0.7358490566037735,
"f1_score": 0.8013698630136986,
"precision": 0.8796992481203008
},
"nuclei_endothelium": {
"FN": 38,
"FP": 6,
"TP": 29,
"recall": 0.43283582089552236,
"f1_score": 0.5686274509803921,
"precision": 0.8285714285714286
},
"nuclei_melanophage": {
"FN": 29,
"FP": 19,
"TP": 13,
"recall": 0.30952380952380953,
"f1_score": 0.3513513513513513,
"precision": 0.40625
}
},
"tissue_metrics": {
"average_dice": 0.806629038864056,
"tissue_tumor": 0.7697643335899058,
"tissue_stroma": 0.9154080455859597,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.3479728151444147
}
},
{
"filename": "final_test_set_primary_roi_013.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.31460887539419025
},
"micro": {
"recall": 0.5777777777777777,
"f1_score": 0.6465364120781527,
"precision": 0.7338709677419355
},
"nuclei_tumor": {
"FN": 218,
"FP": 25,
"TP": 287,
"recall": 0.5683168316831683,
"f1_score": 0.7025703794369645,
"precision": 0.9198717948717948
},
"nuclei_stroma": {
"FN": 1,
"FP": 16,
"TP": 2,
"recall": 0.6666666666666666,
"f1_score": 0.1904761904761905,
"precision": 0.1111111111111111
},
"nuclei_histiocyte": {
"FN": 21,
"FP": 37,
"TP": 13,
"recall": 0.38235294117647056,
"f1_score": 0.30952380952380953,
"precision": 0.26
},
"nuclei_lymphocyte": {
"FN": 19,
"FP": 38,
"TP": 62,
"recall": 0.7654320987654321,
"f1_score": 0.6850828729281768,
"precision": 0.62
},
"nuclei_endothelium": {
"FN": 7,
"FP": 15,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.5097728911095125,
"tissue_tumor": 0.9208297608410665,
"tissue_stroma": 0.6280346918735009,
"tissue_necrosis": 1.0,
"tissue_epidermis": 2.07253885580821e-09,
"tissue_blood_vessel": 7.604562731859649e-10
}
},
{
"filename": "final_test_set_primary_roi_014.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4886935049966068
},
"micro": {
"recall": 0.4961832061068702,
"f1_score": 0.554765291607397,
"precision": 0.6290322580645161
},
"nuclei_tumor": {
"FN": 115,
"FP": 8,
"TP": 92,
"recall": 0.4444444444444444,
"f1_score": 0.5993485342019543,
"precision": 0.92
},
"nuclei_stroma": {
"FN": 12,
"FP": 7,
"TP": 11,
"recall": 0.4782608695652174,
"f1_score": 0.5365853658536586,
"precision": 0.6111111111111112
},
"nuclei_epithelium": {
"FN": 0,
"FP": 44,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 36,
"FP": 17,
"TP": 26,
"recall": 0.41935483870967744,
"f1_score": 0.49523809523809514,
"precision": 0.6046511627906976
},
"nuclei_lymphocyte": {
"FN": 12,
"FP": 32,
"TP": 41,
"recall": 0.7735849056603774,
"f1_score": 0.6507936507936508,
"precision": 0.5616438356164384
},
"nuclei_endothelium": {
"FN": 20,
"FP": 6,
"TP": 23,
"recall": 0.5348837209302325,
"f1_score": 0.6388888888888888,
"precision": 0.7931034482758621
},
"nuclei_melanophage": {
"FN": 3,
"FP": 1,
"TP": 2,
"recall": 0.4,
"f1_score": 0.5,
"precision": 0.6666666666666666
}
},
"tissue_metrics": {
"average_dice": 0.5243194490310644,
"tissue_tumor": 0.9564877859192905,
"tissue_stroma": 0.9336354505432805,
"tissue_necrosis": 4.237288117638609e-09,
"tissue_epidermis": 1.1337868467870898e-09,
"tissue_blood_vessel": 0.7314740033216759
}
},
{
"filename": "final_test_set_primary_roi_015.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5238416164869142
},
"micro": {
"recall": 0.8660714285714286,
"f1_score": 0.880817253121453,
"precision": 0.8960739030023095
},
"nuclei_tumor": {
"FN": 38,
"FP": 41,
"TP": 378,
"recall": 0.9086538461538461,
"f1_score": 0.9053892215568863,
"precision": 0.9021479713603818
},
"nuclei_stroma": {
"FN": 2,
"FP": 3,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.28571428571428575,
"precision": 0.25
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 0,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.5,
"precision": 1.0
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 1,
"TP": 2,
"recall": 0.13333333333333333,
"f1_score": 0.2222222222222222,
"precision": 0.6666666666666666
},
"nuclei_endothelium": {
"FN": 5,
"FP": 0,
"TP": 6,
"recall": 0.5454545454545454,
"f1_score": 0.7058823529411764,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.6020338330001669,
"tissue_tumor": 0.9792366036264654,
"tissue_stroma": 0.18977119800235123,
"tissue_necrosis": 1.0,
"tissue_epidermis": 3.861003711930359e-08,
"tissue_blood_vessel": 0.8411613247619811
}
},
{
"filename": "final_test_set_primary_roi_016.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.49317719890475303
},
"micro": {
"recall": 0.6592741935483871,
"f1_score": 0.7124183006535948,
"precision": 0.7748815165876777
},
"nuclei_tumor": {
"FN": 101,
"FP": 48,
"TP": 257,
"recall": 0.7178770949720671,
"f1_score": 0.7752639517345401,
"precision": 0.8426229508196721
},
"nuclei_stroma": {
"FN": 10,
"FP": 8,
"TP": 5,
"recall": 0.3333333333333333,
"f1_score": 0.3571428571428571,
"precision": 0.38461538461538464
},
"nuclei_histiocyte": {
"FN": 35,
"FP": 17,
"TP": 19,
"recall": 0.35185185185185186,
"f1_score": 0.4222222222222222,
"precision": 0.5277777777777778
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 18,
"TP": 41,
"recall": 0.8913043478260869,
"f1_score": 0.780952380952381,
"precision": 0.6949152542372882
},
"nuclei_endothelium": {
"FN": 9,
"FP": 4,
"TP": 3,
"recall": 0.25,
"f1_score": 0.3157894736842105,
"precision": 0.42857142857142855
},
"nuclei_melanophage": {
"FN": 9,
"FP": 0,
"TP": 2,
"recall": 0.18181818181818182,
"f1_score": 0.3076923076923077,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.4817341804149601,
"tissue_tumor": 0.6902196917882836,
"tissue_stroma": 0.561138055922803,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.1214534023534222e-09,
"tissue_blood_vessel": 0.15731315324226053
}
},
{
"filename": "final_test_set_primary_roi_017.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5226662971947554
},
"micro": {
"recall": 0.6431818181818182,
"f1_score": 0.6868932038834952,
"precision": 0.7369791666666666
},
"nuclei_tumor": {
"FN": 53,
"FP": 9,
"TP": 97,
"recall": 0.6466666666666666,
"f1_score": 0.7578125,
"precision": 0.9150943396226415
},
"nuclei_stroma": {
"FN": 29,
"FP": 17,
"TP": 16,
"recall": 0.35555555555555557,
"f1_score": 0.41025641025641024,
"precision": 0.48484848484848486
},
"nuclei_epithelium": {
"FN": 22,
"FP": 32,
"TP": 76,
"recall": 0.7755102040816326,
"f1_score": 0.7378640776699029,
"precision": 0.7037037037037037
},
"nuclei_histiocyte": {
"FN": 35,
"FP": 22,
"TP": 24,
"recall": 0.4067796610169492,
"f1_score": 0.4571428571428572,
"precision": 0.5217391304347826
},
"nuclei_lymphocyte": {
"FN": 12,
"FP": 16,
"TP": 66,
"recall": 0.8461538461538461,
"f1_score": 0.8250000000000001,
"precision": 0.8048780487804879
},
"nuclei_endothelium": {
"FN": 6,
"FP": 3,
"TP": 4,
"recall": 0.4,
"f1_score": 0.47058823529411764,
"precision": 0.5714285714285714
},
"nuclei_melanophage": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7670154071521751,
"tissue_tumor": 0.9000139705862986,
"tissue_stroma": 0.9243366846686091,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.8052609171692842,
"tissue_blood_vessel": 0.20546546333668336
}
},
{
"filename": "final_test_set_primary_roi_018.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.30152145436173516
},
"micro": {
"recall": 0.49230769230769234,
"f1_score": 0.50967007963595,
"precision": 0.5283018867924528
},
"nuclei_tumor": {
"FN": 411,
"FP": 8,
"TP": 142,
"recall": 0.25678119349005424,
"f1_score": 0.4039829302987198,
"precision": 0.9466666666666667
},
"nuclei_stroma": {
"FN": 15,
"FP": 5,
"TP": 2,
"recall": 0.11764705882352941,
"f1_score": 0.16666666666666666,
"precision": 0.2857142857142857
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 3,
"FP": 233,
"TP": 1,
"recall": 0.25,
"f1_score": 0.008403361344537816,
"precision": 0.004273504273504274
},
"nuclei_lymphocyte": {
"FN": 21,
"FP": 151,
"TP": 298,
"recall": 0.9341692789968652,
"f1_score": 0.7760416666666666,
"precision": 0.6636971046770601
},
"nuclei_endothelium": {
"FN": 5,
"FP": 2,
"TP": 4,
"recall": 0.4444444444444444,
"f1_score": 0.5333333333333333,
"precision": 0.6666666666666666
},
"nuclei_plasma_cell": {
"FN": 7,
"FP": 0,
"TP": 1,
"recall": 0.125,
"f1_score": 0.2222222222222222,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.6691516115299267,
"tissue_tumor": 0.8171282005815524,
"tissue_stroma": 3.19907866524204e-11,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5286298570360902
}
},
{
"filename": "final_test_set_primary_roi_019.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.38150968819180164
},
"micro": {
"recall": 0.547945205479452,
"f1_score": 0.5882352941176471,
"precision": 0.6349206349206349
},
"nuclei_tumor": {
"FN": 43,
"FP": 51,
"TP": 69,
"recall": 0.6160714285714286,
"f1_score": 0.5948275862068966,
"precision": 0.575
},
"nuclei_stroma": {
"FN": 18,
"FP": 13,
"TP": 8,
"recall": 0.3076923076923077,
"f1_score": 0.3404255319148936,
"precision": 0.38095238095238093
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 32,
"FP": 0,
"TP": 1,
"recall": 0.030303030303030304,
"f1_score": 0.05882352941176471,
"precision": 1.0
},
"nuclei_histiocyte": {
"FN": 26,
"FP": 25,
"TP": 30,
"recall": 0.5357142857142857,
"f1_score": 0.5405405405405406,
"precision": 0.5454545454545454
},
"nuclei_lymphocyte": {
"FN": 28,
"FP": 18,
"TP": 82,
"recall": 0.7454545454545455,
"f1_score": 0.780952380952381,
"precision": 0.82
},
"nuclei_endothelium": {
"FN": 14,
"FP": 3,
"TP": 9,
"recall": 0.391304347826087,
"f1_score": 0.5142857142857143,
"precision": 0.75
},
"nuclei_melanophage": {
"FN": 3,
"FP": 4,
"TP": 1,
"recall": 0.25,
"f1_score": 0.22222222222222224,
"precision": 0.2
}
},
"tissue_metrics": {
"average_dice": 0.6821271842034025,
"tissue_tumor": 0.6852605082420234,
"tissue_stroma": 0.7054864185397637,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.488338820972075,
"tissue_blood_vessel": 0.5315501732631503
}
},
{
"filename": "final_test_set_primary_roi_020.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.53591720400289
},
"micro": {
"recall": 0.7062374245472837,
"f1_score": 0.7476038338658146,
"precision": 0.7941176470588235
},
"nuclei_tumor": {
"FN": 72,
"FP": 21,
"TP": 249,
"recall": 0.7757009345794392,
"f1_score": 0.8426395939086295,
"precision": 0.9222222222222223
},
"nuclei_stroma": {
"FN": 38,
"FP": 10,
"TP": 15,
"recall": 0.2830188679245283,
"f1_score": 0.3846153846153846,
"precision": 0.6
},
"nuclei_histiocyte": {
"FN": 21,
"FP": 31,
"TP": 17,
"recall": 0.4473684210526316,
"f1_score": 0.3953488372093023,
"precision": 0.3541666666666667
},
"nuclei_lymphocyte": {
"FN": 12,
"FP": 23,
"TP": 67,
"recall": 0.8481012658227848,
"f1_score": 0.7928994082840237,
"precision": 0.7444444444444445
},
"nuclei_endothelium": {
"FN": 1,
"FP": 5,
"TP": 2,
"recall": 0.6666666666666666,
"f1_score": 0.4,
"precision": 0.2857142857142857
},
"nuclei_melanophage": {
"FN": 2,
"FP": 1,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.4,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.7508409900166599,
"tissue_tumor": 0.927204661426222,
"tissue_stroma": 0.827000287493069,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.1640088451123168e-09
}
},
{
"filename": "final_test_set_primary_roi_021.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5631272954540485
},
"micro": {
"recall": 0.667621776504298,
"f1_score": 0.7114503816793893,
"precision": 0.761437908496732
},
"nuclei_tumor": {
"FN": 29,
"FP": 12,
"TP": 96,
"recall": 0.768,
"f1_score": 0.8240343347639485,
"precision": 0.8888888888888888
},
"nuclei_stroma": {
"FN": 13,
"FP": 9,
"TP": 6,
"recall": 0.3157894736842105,
"f1_score": 0.35294117647058826,
"precision": 0.4
},
"nuclei_histiocyte": {
"FN": 40,
"FP": 25,
"TP": 39,
"recall": 0.4936708860759494,
"f1_score": 0.5454545454545455,
"precision": 0.609375
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 24,
"TP": 84,
"recall": 0.9032258064516129,
"f1_score": 0.835820895522388,
"precision": 0.7777777777777778
},
"nuclei_endothelium": {
"FN": 19,
"FP": 3,
"TP": 2,
"recall": 0.09523809523809523,
"f1_score": 0.15384615384615385,
"precision": 0.4
},
"nuclei_melanophage": {
"FN": 6,
"FP": 0,
"TP": 6,
"recall": 0.5,
"f1_score": 0.6666666666666666,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.762303172516526,
"tissue_tumor": 0.82762476125579,
"tissue_stroma": 0.8184115865868206,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.16547951474001948
}
},
{
"filename": "final_test_set_primary_roi_022.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5679494971140808
},
"micro": {
"recall": 0.7760252365930599,
"f1_score": 0.8026101141924958,
"precision": 0.831081081081081
},
"nuclei_tumor": {
"FN": 39,
"FP": 10,
"TP": 171,
"recall": 0.8142857142857143,
"f1_score": 0.8746803069053707,
"precision": 0.9447513812154696
},
"nuclei_stroma": {
"FN": 15,
"FP": 18,
"TP": 13,
"recall": 0.4642857142857143,
"f1_score": 0.44067796610169496,
"precision": 0.41935483870967744
},
"nuclei_histiocyte": {
"FN": 6,
"FP": 12,
"TP": 7,
"recall": 0.5384615384615384,
"f1_score": 0.4375,
"precision": 0.3684210526315789
},
"nuclei_lymphocyte": {
"FN": 11,
"FP": 7,
"TP": 53,
"recall": 0.828125,
"f1_score": 0.8548387096774193,
"precision": 0.8833333333333333
},
"nuclei_endothelium": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 0,
"FP": 1,
"TP": 2,
"recall": 1.0,
"f1_score": 0.8,
"precision": 0.6666666666666666
}
},
"tissue_metrics": {
"average_dice": 0.9578953123946778,
"tissue_tumor": 0.9493637983495715,
"tissue_stroma": 0.8401127636238177,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_023.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.38954758190327615
},
"micro": {
"recall": 0.717201166180758,
"f1_score": 0.7454545454545455,
"precision": 0.7760252365930599
},
"nuclei_tumor": {
"FN": 89,
"FP": 66,
"TP": 243,
"recall": 0.7319277108433735,
"f1_score": 0.7581903276131046,
"precision": 0.7864077669902912
},
"nuclei_stroma": {
"FN": 4,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_apoptosis": {
"FN": 3,
"FP": 3,
"TP": 2,
"recall": 0.4,
"f1_score": 0.4000000000000001,
"precision": 0.4
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 2,
"TP": 1,
"recall": 0.5,
"f1_score": 0.4,
"precision": 0.3333333333333333
}
},
"tissue_metrics": {
"average_dice": 0.6339474172230513,
"tissue_tumor": 0.9932545487783028,
"tissue_stroma": 0.17648253494289068,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.3940627187118445e-09
}
},
{
"filename": "final_test_set_primary_roi_024.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4603477284328293
},
"micro": {
"recall": 0.6312056737588653,
"f1_score": 0.6917098445595856,
"precision": 0.7650429799426934
},
"nuclei_tumor": {
"FN": 41,
"FP": 18,
"TP": 72,
"recall": 0.6371681415929203,
"f1_score": 0.7093596059113301,
"precision": 0.8
},
"nuclei_stroma": {
"FN": 22,
"FP": 8,
"TP": 16,
"recall": 0.42105263157894735,
"f1_score": 0.5161290322580646,
"precision": 0.6666666666666666
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_histiocyte": {
"FN": 10,
"FP": 23,
"TP": 17,
"recall": 0.6296296296296297,
"f1_score": 0.5074626865671642,
"precision": 0.425
},
"nuclei_lymphocyte": {
"FN": 65,
"FP": 21,
"TP": 150,
"recall": 0.6976744186046512,
"f1_score": 0.7772020725388601,
"precision": 0.8771929824561403
},
"nuclei_endothelium": {
"FN": 8,
"FP": 5,
"TP": 1,
"recall": 0.1111111111111111,
"f1_score": 0.13333333333333333,
"precision": 0.16666666666666666
},
"nuclei_melanophage": {
"FN": 9,
"FP": 7,
"TP": 11,
"recall": 0.55,
"f1_score": 0.5789473684210527,
"precision": 0.6111111111111112
}
},
"tissue_metrics": {
"average_dice": 0.34224158139124455,
"tissue_tumor": 0.8805215181226127,
"tissue_stroma": 0.8306862258209846,
"tissue_necrosis": 3.8881760551000523e-10,
"tissue_epidermis": 1.612902965660812e-07,
"tissue_blood_vessel": 1.3335111330397239e-09
}
},
{
"filename": "final_test_set_primary_roi_025.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.41853514223802
},
"micro": {
"recall": 0.4972972972972973,
"f1_score": 0.5312800769971127,
"precision": 0.5702479338842975
},
"nuclei_tumor": {
"FN": 22,
"FP": 108,
"TP": 62,
"recall": 0.7380952380952381,
"f1_score": 0.4881889763779527,
"precision": 0.36470588235294116
},
"nuclei_stroma": {
"FN": 35,
"FP": 4,
"TP": 9,
"recall": 0.20454545454545456,
"f1_score": 0.3157894736842105,
"precision": 0.6923076923076923
},
"nuclei_apoptosis": {
"FN": 8,
"FP": 2,
"TP": 1,
"recall": 0.1111111111111111,
"f1_score": 0.16666666666666666,
"precision": 0.3333333333333333
},
"nuclei_histiocyte": {
"FN": 56,
"FP": 52,
"TP": 25,
"recall": 0.30864197530864196,
"f1_score": 0.3164556962025316,
"precision": 0.3246753246753247
},
"nuclei_lymphocyte": {
"FN": 66,
"FP": 31,
"TP": 147,
"recall": 0.6901408450704225,
"f1_score": 0.7519181585677749,
"precision": 0.8258426966292135
},
"nuclei_neutrophil": {
"FN": 5,
"FP": 0,
"TP": 4,
"recall": 0.4444444444444444,
"f1_score": 0.6153846153846153,
"precision": 1.0
},
"nuclei_endothelium": {
"FN": 49,
"FP": 9,
"TP": 20,
"recall": 0.2898550724637681,
"f1_score": 0.40816326530612246,
"precision": 0.6896551724137931
},
"nuclei_melanophage": {
"FN": 38,
"FP": 2,
"TP": 8,
"recall": 0.17391304347826086,
"f1_score": 0.2857142857142857,
"precision": 0.8
}
},
"tissue_metrics": {
"average_dice": 0.7759552859224677,
"tissue_tumor": 0.534050730213603,
"tissue_stroma": 0.6908525903456062,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6548731090531292
}
},
{
"filename": "final_test_set_primary_roi_026.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.40475924156850096
},
"micro": {
"recall": 0.7270788912579957,
"f1_score": 0.7637178051511758,
"precision": 0.8042452830188679
},
"nuclei_tumor": {
"FN": 64,
"FP": 25,
"TP": 292,
"recall": 0.8202247191011236,
"f1_score": 0.8677563150074294,
"precision": 0.9211356466876972
},
"nuclei_stroma": {
"FN": 34,
"FP": 7,
"TP": 15,
"recall": 0.30612244897959184,
"f1_score": 0.4225352112676057,
"precision": 0.6818181818181818
},
"nuclei_epithelium": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 4,
"FP": 27,
"TP": 2,
"recall": 0.3333333333333333,
"f1_score": 0.1142857142857143,
"precision": 0.06896551724137931
},
"nuclei_lymphocyte": {
"FN": 7,
"FP": 18,
"TP": 14,
"recall": 0.6666666666666666,
"f1_score": 0.5283018867924528,
"precision": 0.4375
},
"nuclei_endothelium": {
"FN": 16,
"FP": 2,
"TP": 13,
"recall": 0.4482758620689655,
"f1_score": 0.5909090909090909,
"precision": 0.8666666666666667
},
"nuclei_melanophage": {
"FN": 2,
"FP": 2,
"TP": 5,
"recall": 0.7142857142857143,
"f1_score": 0.7142857142857143,
"precision": 0.7142857142857143
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.8902539536917711,
"tissue_tumor": 0.8985378492735041,
"tissue_stroma": 0.8663588970556041,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6863730221297469
}
},
{
"filename": "final_test_set_primary_roi_027.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3551311810652853
},
"micro": {
"recall": 0.638671875,
"f1_score": 0.6891464699683877,
"precision": 0.7482837528604119
},
"nuclei_tumor": {
"FN": 16,
"FP": 15,
"TP": 21,
"recall": 0.5675675675675675,
"f1_score": 0.5753424657534246,
"precision": 0.5833333333333334
},
"nuclei_stroma": {
"FN": 32,
"FP": 4,
"TP": 10,
"recall": 0.23809523809523808,
"f1_score": 0.35714285714285715,
"precision": 0.7142857142857143
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 6,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 8,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 44,
"FP": 30,
"TP": 33,
"recall": 0.42857142857142855,
"f1_score": 0.4714285714285715,
"precision": 0.5238095238095238
},
"nuclei_lymphocyte": {
"FN": 40,
"FP": 43,
"TP": 244,
"recall": 0.8591549295774648,
"f1_score": 0.8546409807355517,
"precision": 0.8501742160278746
},
"nuclei_endothelium": {
"FN": 39,
"FP": 6,
"TP": 13,
"recall": 0.25,
"f1_score": 0.36619718309859156,
"precision": 0.6842105263157895
},
"nuclei_melanophage": {
"FN": 5,
"FP": 4,
"TP": 6,
"recall": 0.5454545454545454,
"f1_score": 0.5714285714285713,
"precision": 0.6
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.7000481528140898,
"tissue_tumor": 0.4514788152678579,
"tissue_stroma": 0.8685144496790238,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.5069111812841972,
"tissue_blood_vessel": 0.6733363178393701
}
},
{
"filename": "final_test_set_primary_roi_028.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.50403021921025
},
"micro": {
"recall": 0.7065573770491803,
"f1_score": 0.7662222222222222,
"precision": 0.8368932038834952
},
"nuclei_tumor": {
"FN": 91,
"FP": 18,
"TP": 250,
"recall": 0.7331378299120235,
"f1_score": 0.8210180623973728,
"precision": 0.9328358208955224
},
"nuclei_stroma": {
"FN": 10,
"FP": 2,
"TP": 7,
"recall": 0.4117647058823529,
"f1_score": 0.5384615384615384,
"precision": 0.7777777777777778
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 21,
"FP": 39,
"TP": 23,
"recall": 0.5227272727272727,
"f1_score": 0.4339622641509434,
"precision": 0.3709677419354839
},
"nuclei_lymphocyte": {
"FN": 51,
"FP": 22,
"TP": 148,
"recall": 0.7437185929648241,
"f1_score": 0.8021680216802167,
"precision": 0.8705882352941177
},
"nuclei_endothelium": {
"FN": 6,
"FP": 2,
"TP": 3,
"recall": 0.3333333333333333,
"f1_score": 0.42857142857142855,
"precision": 0.6
}
},
"tissue_metrics": {
"average_dice": 0.8969554824204262,
"tissue_tumor": 0.9481105956609467,
"tissue_stroma": 0.7892205579659167,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7474462584752678
}
},
{
"filename": "final_test_set_primary_roi_029.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.27699261522790936
},
"micro": {
"recall": 0.7766749379652605,
"f1_score": 0.8247694334650856,
"precision": 0.8792134831460674
},
"nuclei_tumor": {
"FN": 75,
"FP": 21,
"TP": 309,
"recall": 0.8046875,
"f1_score": 0.865546218487395,
"precision": 0.9363636363636364
},
"nuclei_stroma": {
"FN": 11,
"FP": 14,
"TP": 4,
"recall": 0.26666666666666666,
"f1_score": 0.2424242424242424,
"precision": 0.2222222222222222
},
"nuclei_histiocyte": {
"FN": 4,
"FP": 7,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_endothelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.883932549038794,
"tissue_tumor": 0.9841136926987695,
"tissue_stroma": 0.43554905249520115,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_030.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.43758763734875095
},
"micro": {
"recall": 0.6060606060606061,
"f1_score": 0.6611570247933883,
"precision": 0.7272727272727273
},
"nuclei_tumor": {
"FN": 45,
"FP": 38,
"TP": 110,
"recall": 0.7096774193548387,
"f1_score": 0.726072607260726,
"precision": 0.7432432432432432
},
"nuclei_stroma": {
"FN": 24,
"FP": 13,
"TP": 24,
"recall": 0.5,
"f1_score": 0.5647058823529412,
"precision": 0.6486486486486487
},
"nuclei_apoptosis": {
"FN": 7,
"FP": 0,
"TP": 1,
"recall": 0.125,
"f1_score": 0.2222222222222222,
"precision": 1.0
},
"nuclei_epithelium": {
"FN": 20,
"FP": 0,
"TP": 14,
"recall": 0.4117647058823529,
"f1_score": 0.5833333333333334,
"precision": 1.0
},
"nuclei_histiocyte": {
"FN": 19,
"FP": 4,
"TP": 2,
"recall": 0.09523809523809523,
"f1_score": 0.14814814814814814,
"precision": 0.3333333333333333
},
"nuclei_lymphocyte": {
"FN": 31,
"FP": 18,
"TP": 76,
"recall": 0.7102803738317757,
"f1_score": 0.7562189054726367,
"precision": 0.8085106382978723
},
"nuclei_endothelium": {
"FN": 9,
"FP": 17,
"TP": 13,
"recall": 0.5909090909090909,
"f1_score": 0.5,
"precision": 0.43333333333333335
},
"nuclei_melanophage": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.8378896832753909,
"tissue_tumor": 0.9039316211382725,
"tissue_stroma": 0.9299445694176628,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.6610277295530594,
"tissue_blood_vessel": 0.6945444962679596
}
},
{
"filename": "final_test_set_primary_roi_031.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.36961829855083006
},
"micro": {
"recall": 0.5968109339407744,
"f1_score": 0.6469135802469136,
"precision": 0.706199460916442
},
"nuclei_tumor": {
"FN": 22,
"FP": 21,
"TP": 37,
"recall": 0.6271186440677966,
"f1_score": 0.6324786324786326,
"precision": 0.6379310344827587
},
"nuclei_stroma": {
"FN": 25,
"FP": 7,
"TP": 6,
"recall": 0.1935483870967742,
"f1_score": 0.2727272727272727,
"precision": 0.46153846153846156
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 99,
"FP": 19,
"TP": 94,
"recall": 0.48704663212435234,
"f1_score": 0.6143790849673203,
"precision": 0.831858407079646
},
"nuclei_lymphocyte": {
"FN": 23,
"FP": 50,
"TP": 120,
"recall": 0.8391608391608392,
"f1_score": 0.7667731629392972,
"precision": 0.7058823529411765
},
"nuclei_endothelium": {
"FN": 1,
"FP": 7,
"TP": 1,
"recall": 0.5,
"f1_score": 0.2,
"precision": 0.125
},
"nuclei_melanophage": {
"FN": 5,
"FP": 4,
"TP": 4,
"recall": 0.4444444444444444,
"f1_score": 0.47058823529411764,
"precision": 0.5
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.7584530607419311,
"tissue_tumor": 0.6308485233890498,
"tissue_stroma": 0.8855022821880212,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.2759144981325845
}
},
{
"filename": "final_test_set_primary_roi_032.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.45903481280541814
},
"micro": {
"recall": 0.7145505097312326,
"f1_score": 0.7772177419354839,
"precision": 0.8519337016574585
},
"nuclei_tumor": {
"FN": 14,
"FP": 58,
"TP": 30,
"recall": 0.6818181818181818,
"f1_score": 0.45454545454545453,
"precision": 0.3409090909090909
},
"nuclei_stroma": {
"FN": 39,
"FP": 7,
"TP": 7,
"recall": 0.15217391304347827,
"f1_score": 0.23333333333333334,
"precision": 0.5
},
"nuclei_apoptosis": {
"FN": 6,
"FP": 3,
"TP": 2,
"recall": 0.25,
"f1_score": 0.3076923076923077,
"precision": 0.4
},
"nuclei_histiocyte": {
"FN": 37,
"FP": 39,
"TP": 49,
"recall": 0.5697674418604651,
"f1_score": 0.5632183908045977,
"precision": 0.5568181818181818
},
"nuclei_lymphocyte": {
"FN": 212,
"FP": 20,
"TP": 681,
"recall": 0.7625979843225084,
"f1_score": 0.8544542032622333,
"precision": 0.9714693295292439
},
"nuclei_endothelium": {
"FN": 0,
"FP": 6,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 0,
"FP": 1,
"TP": 2,
"recall": 1.0,
"f1_score": 0.8,
"precision": 0.6666666666666666
}
},
"tissue_metrics": {
"average_dice": 0.6914489910335923,
"tissue_tumor": 0.5479241063917465,
"tissue_stroma": 0.9093208282844121,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.0491802858774533e-08
}
},
{
"filename": "final_test_set_primary_roi_033.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.28977777777777775
},
"micro": {
"recall": 0.8337595907928389,
"f1_score": 0.8578947368421053,
"precision": 0.8834688346883469
},
"nuclei_tumor": {
"FN": 65,
"FP": 33,
"TP": 326,
"recall": 0.8337595907928389,
"f1_score": 0.8693333333333333,
"precision": 0.9080779944289693
},
"nuclei_stroma": {
"FN": 0,
"FP": 3,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 7,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7956673312075143,
"tissue_tumor": 0.9783366558126905,
"tissue_stroma": 2.2488081311844903e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_034.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.32329269386428094
},
"micro": {
"recall": 0.7127937336814621,
"f1_score": 0.7438692098092644,
"precision": 0.7777777777777778
},
"nuclei_tumor": {
"FN": 47,
"FP": 39,
"TP": 182,
"recall": 0.7947598253275109,
"f1_score": 0.8088888888888888,
"precision": 0.8235294117647058
},
"nuclei_stroma": {
"FN": 3,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 8,
"FP": 1,
"TP": 1,
"recall": 0.1111111111111111,
"f1_score": 0.1818181818181818,
"precision": 0.5
},
"nuclei_histiocyte": {
"FN": 32,
"FP": 13,
"TP": 3,
"recall": 0.08571428571428572,
"f1_score": 0.11764705882352938,
"precision": 0.1875
},
"nuclei_lymphocyte": {
"FN": 18,
"FP": 22,
"TP": 86,
"recall": 0.8269230769230769,
"f1_score": 0.8113207547169811,
"precision": 0.7962962962962963
},
"nuclei_endothelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 1,
"FP": 0,
"TP": 1,
"recall": 0.5,
"f1_score": 0.6666666666666666,
"precision": 1.0
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.606166777930553,
"tissue_tumor": 0.9487808981352633,
"tissue_stroma": 0.08205298878824366,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.72925763447255e-09
}
},
{
"filename": "final_test_set_primary_roi_035.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4915336073096898
},
"micro": {
"recall": 0.6760048721071864,
"f1_score": 0.7429718875502008,
"precision": 0.8246656760772659
},
"nuclei_tumor": {
"FN": 11,
"FP": 20,
"TP": 40,
"recall": 0.7843137254901961,
"f1_score": 0.7207207207207207,
"precision": 0.6666666666666666
},
"nuclei_stroma": {
"FN": 33,
"FP": 8,
"TP": 14,
"recall": 0.2978723404255319,
"f1_score": 0.40579710144927533,
"precision": 0.6363636363636364
},
"nuclei_apoptosis": {
"FN": 18,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_histiocyte": {
"FN": 66,
"FP": 49,
"TP": 86,
"recall": 0.5657894736842105,
"f1_score": 0.5993031358885018,
"precision": 0.6370370370370371
},
"nuclei_lymphocyte": {
"FN": 120,
"FP": 35,
"TP": 411,
"recall": 0.7740112994350282,
"f1_score": 0.8413510747185261,
"precision": 0.92152466367713
},
"nuclei_neutrophil": {
"FN": 1,
"FP": 0,
"TP": 1,
"recall": 0.5,
"f1_score": 0.6666666666666666,
"precision": 1.0
},
"nuclei_endothelium": {
"FN": 17,
"FP": 6,
"TP": 3,
"recall": 0.15,
"f1_score": 0.20689655172413793,
"precision": 0.3333333333333333
}
},
"tissue_metrics": {
"average_dice": 0.5411565212350039,
"tissue_tumor": 0.6219982246612048,
"tissue_stroma": 0.8591819789533167,
"tissue_necrosis": 3.8337678255506186e-10,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.22460240217712132
}
},
{
"filename": "final_test_set_primary_roi_036.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4619348040178136
},
"micro": {
"recall": 0.6875,
"f1_score": 0.7107195301027901,
"precision": 0.7355623100303952
},
"nuclei_tumor": {
"FN": 5,
"FP": 39,
"TP": 90,
"recall": 0.9473684210526315,
"f1_score": 0.8035714285714286,
"precision": 0.6976744186046512
},
"nuclei_stroma": {
"FN": 7,
"FP": 8,
"TP": 8,
"recall": 0.5333333333333333,
"f1_score": 0.5161290322580646,
"precision": 0.5
},
"nuclei_apoptosis": {
"FN": 5,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 41,
"FP": 14,
"TP": 28,
"recall": 0.4057971014492754,
"f1_score": 0.5045045045045046,
"precision": 0.6666666666666666
},
"nuclei_lymphocyte": {
"FN": 37,
"FP": 13,
"TP": 103,
"recall": 0.7357142857142858,
"f1_score": 0.8046875000000001,
"precision": 0.8879310344827587
},
"nuclei_endothelium": {
"FN": 3,
"FP": 7,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 12,
"FP": 5,
"TP": 13,
"recall": 0.52,
"f1_score": 0.6046511627906976,
"precision": 0.7222222222222222
}
},
"tissue_metrics": {
"average_dice": 0.7246817542483187,
"tissue_tumor": 0.7728255584712412,
"tissue_stroma": 0.850583210507909,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.2624434337953773e-09
}
},
{
"filename": "final_test_set_primary_roi_037.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.45969908742381743
},
"micro": {
"recall": 0.6862244897959183,
"f1_score": 0.6879795396419436,
"precision": 0.6897435897435897
},
"nuclei_tumor": {
"FN": 18,
"FP": 61,
"TP": 108,
"recall": 0.8571428571428571,
"f1_score": 0.7322033898305084,
"precision": 0.6390532544378699
},
"nuclei_stroma": {
"FN": 8,
"FP": 3,
"TP": 4,
"recall": 0.3333333333333333,
"f1_score": 0.4210526315789474,
"precision": 0.5714285714285714
},
"nuclei_histiocyte": {
"FN": 59,
"FP": 19,
"TP": 38,
"recall": 0.3917525773195876,
"f1_score": 0.49350649350649345,
"precision": 0.6666666666666666
},
"nuclei_lymphocyte": {
"FN": 11,
"FP": 32,
"TP": 117,
"recall": 0.9140625,
"f1_score": 0.8447653429602889,
"precision": 0.785234899328859
},
"nuclei_endothelium": {
"FN": 20,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 7,
"FP": 4,
"TP": 2,
"recall": 0.2222222222222222,
"f1_score": 0.26666666666666666,
"precision": 0.3333333333333333
}
},
"tissue_metrics": {
"average_dice": 0.7290991515244301,
"tissue_tumor": 0.8158283915691785,
"tissue_stroma": 0.8296673657365864,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.163856106823218e-10
}
},
{
"filename": "final_test_set_primary_roi_038.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4824195985010863
},
"micro": {
"recall": 0.6382978723404256,
"f1_score": 0.672645739910314,
"precision": 0.7109004739336493
},
"nuclei_tumor": {
"FN": 28,
"FP": 7,
"TP": 72,
"recall": 0.72,
"f1_score": 0.8044692737430168,
"precision": 0.9113924050632911
},
"nuclei_stroma": {
"FN": 52,
"FP": 4,
"TP": 15,
"recall": 0.22388059701492538,
"f1_score": 0.3488372093023256,
"precision": 0.7894736842105263
},
"nuclei_epithelium": {
"FN": 7,
"FP": 6,
"TP": 12,
"recall": 0.631578947368421,
"f1_score": 0.6486486486486486,
"precision": 0.6666666666666666
},
"nuclei_histiocyte": {
"FN": 52,
"FP": 38,
"TP": 39,
"recall": 0.42857142857142855,
"f1_score": 0.46428571428571425,
"precision": 0.5064935064935064
},
"nuclei_lymphocyte": {
"FN": 11,
"FP": 59,
"TP": 149,
"recall": 0.93125,
"f1_score": 0.8097826086956522,
"precision": 0.7163461538461539
},
"nuclei_endothelium": {
"FN": 18,
"FP": 3,
"TP": 12,
"recall": 0.4,
"f1_score": 0.5333333333333333,
"precision": 0.8
},
"nuclei_melanophage": {
"FN": 1,
"FP": 5,
"TP": 1,
"recall": 0.5,
"f1_score": 0.25,
"precision": 0.16666666666666666
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.7250442801237819,
"tissue_tumor": 0.8795086672046931,
"tissue_stroma": 0.9745796771613268,
"tissue_necrosis": 1.0,
"tissue_epidermis": 2.5528438674173276e-10,
"tissue_blood_vessel": 0.7711330559976051
}
},
{
"filename": "final_test_set_primary_roi_039.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5048754406031851
},
"micro": {
"recall": 0.6811989100817438,
"f1_score": 0.6896551724137929,
"precision": 0.6983240223463687
},
"nuclei_tumor": {
"FN": 62,
"FP": 35,
"TP": 169,
"recall": 0.7316017316017316,
"f1_score": 0.7770114942528734,
"precision": 0.8284313725490197
},
"nuclei_stroma": {
"FN": 3,
"FP": 13,
"TP": 3,
"recall": 0.5,
"f1_score": 0.2727272727272727,
"precision": 0.1875
},
"nuclei_apoptosis": {
"FN": 4,
"FP": 0,
"TP": 1,
"recall": 0.2,
"f1_score": 0.33333333333333337,
"precision": 1.0
},
"nuclei_histiocyte": {
"FN": 21,
"FP": 30,
"TP": 22,
"recall": 0.5116279069767442,
"f1_score": 0.4631578947368421,
"precision": 0.4230769230769231
},
"nuclei_lymphocyte": {
"FN": 25,
"FP": 24,
"TP": 54,
"recall": 0.6835443037974683,
"f1_score": 0.6878980891719746,
"precision": 0.6923076923076923
},
"nuclei_neutrophil": {
"FN": 0,
"FP": 0,
"TP": 1,
"recall": 1.0,
"f1_score": 1.0,
"precision": 1.0
},
"nuclei_endothelium": {
"FN": 2,
"FP": 6,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.5615997178062836,
"tissue_tumor": 0.9587011650931438,
"tissue_stroma": 0.8492974222621298,
"tissue_necrosis": 1.0,
"tissue_epidermis": 3.958984914700113e-10,
"tissue_blood_vessel": 1.2802458055559523e-09
}
},
{
"filename": "final_test_set_primary_roi_040.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3899947349729212
},
"micro": {
"recall": 0.6571428571428571,
"f1_score": 0.7221350078492935,
"precision": 0.8013937282229965
},
"nuclei_tumor": {
"FN": 52,
"FP": 11,
"TP": 195,
"recall": 0.7894736842105263,
"f1_score": 0.8609271523178808,
"precision": 0.9466019417475728
},
"nuclei_stroma": {
"FN": 3,
"FP": 32,
"TP": 13,
"recall": 0.8125,
"f1_score": 0.4262295081967213,
"precision": 0.28888888888888886
},
"nuclei_epithelium": {
"FN": 15,
"FP": 3,
"TP": 6,
"recall": 0.2857142857142857,
"f1_score": 0.4,
"precision": 0.6666666666666666
},
"nuclei_histiocyte": {
"FN": 13,
"FP": 2,
"TP": 3,
"recall": 0.1875,
"f1_score": 0.2857142857142857,
"precision": 0.6
},
"nuclei_lymphocyte": {
"FN": 28,
"FP": 3,
"TP": 8,
"recall": 0.2222222222222222,
"f1_score": 0.3404255319148936,
"precision": 0.7272727272727273
},
"nuclei_endothelium": {
"FN": 8,
"FP": 6,
"TP": 5,
"recall": 0.38461538461538464,
"f1_score": 0.41666666666666663,
"precision": 0.45454545454545453
},
"nuclei_melanophage": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.6747367616968758,
"tissue_tumor": 0.953254874508861,
"tissue_stroma": 0.7912256616165003,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.6292032718060431,
"tissue_blood_vessel": 5.529750052239687e-10
}
},
{
"filename": "final_test_set_primary_roi_041.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.40841373649052787
},
"micro": {
"recall": 0.6311475409836066,
"f1_score": 0.6543909348441928,
"precision": 0.6794117647058824
},
"nuclei_tumor": {
"FN": 37,
"FP": 79,
"TP": 160,
"recall": 0.8121827411167513,
"f1_score": 0.7339449541284404,
"precision": 0.6694560669456067
},
"nuclei_stroma": {
"FN": 8,
"FP": 3,
"TP": 16,
"recall": 0.6666666666666666,
"f1_score": 0.744186046511628,
"precision": 0.8421052631578947
},
"nuclei_apoptosis": {
"FN": 4,
"FP": 1,
"TP": 1,
"recall": 0.2,
"f1_score": 0.28571428571428575,
"precision": 0.5
},
"nuclei_histiocyte": {
"FN": 28,
"FP": 9,
"TP": 10,
"recall": 0.2631578947368421,
"f1_score": 0.35087719298245607,
"precision": 0.5263157894736842
},
"nuclei_lymphocyte": {
"FN": 26,
"FP": 2,
"TP": 38,
"recall": 0.59375,
"f1_score": 0.7307692307692308,
"precision": 0.95
},
"nuclei_neutrophil": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_endothelium": {
"FN": 5,
"FP": 14,
"TP": 3,
"recall": 0.375,
"f1_score": 0.24,
"precision": 0.17647058823529413
},
"nuclei_melanophage": {
"FN": 26,
"FP": 1,
"TP": 3,
"recall": 0.10344827586206896,
"f1_score": 0.18181818181818182,
"precision": 0.75
}
},
"tissue_metrics": {
"average_dice": 0.548256424502139,
"tissue_tumor": 0.8560456781030691,
"tissue_stroma": 0.47854158589947277,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.3850415320631368e-08,
"tissue_blood_vessel": 0.4066948446577381
}
},
{
"filename": "final_test_set_primary_roi_042.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3755409556535524
},
"micro": {
"recall": 0.773784355179704,
"f1_score": 0.8289920724801811,
"precision": 0.8926829268292683
},
"nuclei_tumor": {
"FN": 32,
"FP": 14,
"TP": 327,
"recall": 0.9108635097493036,
"f1_score": 0.9342857142857143,
"precision": 0.9589442815249267
},
"nuclei_stroma": {
"FN": 10,
"FP": 17,
"TP": 11,
"recall": 0.5238095238095238,
"f1_score": 0.4489795918367347,
"precision": 0.39285714285714285
},
"nuclei_epithelium": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 26,
"FP": 2,
"TP": 4,
"recall": 0.13333333333333333,
"f1_score": 0.2222222222222222,
"precision": 0.6666666666666666
},
"nuclei_lymphocyte": {
"FN": 11,
"FP": 6,
"TP": 10,
"recall": 0.47619047619047616,
"f1_score": 0.5405405405405405,
"precision": 0.625
},
"nuclei_endothelium": {
"FN": 28,
"FP": 2,
"TP": 14,
"recall": 0.3333333333333333,
"f1_score": 0.48275862068965514,
"precision": 0.875
},
"nuclei_melanophage": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.6960573657334721,
"tissue_tumor": 0.9749524189285355,
"tissue_stroma": 0.866778423512968,
"tissue_necrosis": 1.0,
"tissue_epidermis": 3.652300936258945e-09,
"tissue_blood_vessel": 0.638555982573556
}
},
{
"filename": "final_test_set_primary_roi_043.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.45157274698880406
},
"micro": {
"recall": 0.6936572199730094,
"f1_score": 0.7353361945636624,
"precision": 0.7823439878234398
},
"nuclei_tumor": {
"FN": 61,
"FP": 36,
"TP": 187,
"recall": 0.7540322580645161,
"f1_score": 0.7940552016985138,
"precision": 0.8385650224215246
},
"nuclei_stroma": {
"FN": 6,
"FP": 1,
"TP": 2,
"recall": 0.25,
"f1_score": 0.36363636363636365,
"precision": 0.6666666666666666
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_histiocyte": {
"FN": 119,
"FP": 29,
"TP": 81,
"recall": 0.405,
"f1_score": 0.5225806451612903,
"precision": 0.7363636363636363
},
"nuclei_lymphocyte": {
"FN": 38,
"FP": 73,
"TP": 243,
"recall": 0.8647686832740213,
"f1_score": 0.8140703517587939,
"precision": 0.7689873417721519
},
"nuclei_endothelium": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 1,
"recall": 0.5,
"f1_score": 0.6666666666666666,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.9319868868040853,
"tissue_tumor": 0.8654819531847354,
"tissue_stroma": 0.7944524808356905,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_044.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.33895220099588114
},
"micro": {
"recall": 0.6267190569744597,
"f1_score": 0.683083511777302,
"precision": 0.7505882352941177
},
"nuclei_tumor": {
"FN": 75,
"FP": 40,
"TP": 281,
"recall": 0.7893258426966292,
"f1_score": 0.8301329394387001,
"precision": 0.8753894080996885
},
"nuclei_stroma": {
"FN": 2,
"FP": 7,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.18181818181818182,
"precision": 0.125
},
"nuclei_apoptosis": {
"FN": 61,
"FP": 5,
"TP": 7,
"recall": 0.10294117647058823,
"f1_score": 0.17500000000000002,
"precision": 0.5833333333333334
},
"nuclei_histiocyte": {
"FN": 10,
"FP": 2,
"TP": 4,
"recall": 0.2857142857142857,
"f1_score": 0.4,
"precision": 0.6666666666666666
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 37,
"TP": 19,
"recall": 0.6785714285714286,
"f1_score": 0.45238095238095244,
"precision": 0.3392857142857143
},
"nuclei_neutrophil": {
"FN": 28,
"FP": 0,
"TP": 7,
"recall": 0.2,
"f1_score": 0.33333333333333337,
"precision": 1.0
},
"nuclei_endothelium": {
"FN": 5,
"FP": 15,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.19068344348246685,
"tissue_tumor": 0.8856310463501365,
"tissue_stroma": 0.0677861299167579,
"tissue_necrosis": 6.493590825433215e-11,
"tissue_epidermis": 4.0983604877721114e-08,
"tissue_blood_vessel": 9.68992247968121e-11
}
},
{
"filename": "final_test_set_primary_roi_045.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5439541864491154
},
"micro": {
"recall": 0.7509025270758123,
"f1_score": 0.7790262172284644,
"precision": 0.8093385214007782
},
"nuclei_tumor": {
"FN": 25,
"FP": 25,
"TP": 178,
"recall": 0.8768472906403941,
"f1_score": 0.8768472906403941,
"precision": 0.8768472906403941
},
"nuclei_stroma": {
"FN": 13,
"FP": 13,
"TP": 21,
"recall": 0.6176470588235294,
"f1_score": 0.6176470588235294,
"precision": 0.6176470588235294
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 0,
"TP": 1,
"recall": 1.0,
"f1_score": 1.0,
"precision": 1.0
},
"nuclei_epithelium": {
"FN": 30,
"FP": 8,
"TP": 7,
"recall": 0.1891891891891892,
"f1_score": 0.2692307692307693,
"precision": 0.4666666666666667
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 1,
"TP": 1,
"recall": 0.5,
"f1_score": 0.5,
"precision": 0.5
},
"nuclei_endothelium": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.6326402991277329,
"tissue_tumor": 0.9574991925537714,
"tissue_stroma": 0.4238104959108384,
"tissue_necrosis": 6.329113883992951e-09,
"tissue_epidermis": 0.7818918008449414,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_046.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.43318815214182976
},
"micro": {
"recall": 0.547550432276657,
"f1_score": 0.5946791862284819,
"precision": 0.6506849315068494
},
"nuclei_tumor": {
"FN": 36,
"FP": 40,
"TP": 36,
"recall": 0.5,
"f1_score": 0.4864864864864865,
"precision": 0.47368421052631576
},
"nuclei_stroma": {
"FN": 1,
"FP": 18,
"TP": 7,
"recall": 0.875,
"f1_score": 0.42424242424242425,
"precision": 0.28
},
"nuclei_epithelium": {
"FN": 59,
"FP": 18,
"TP": 114,
"recall": 0.6589595375722543,
"f1_score": 0.7475409836065575,
"precision": 0.8636363636363636
},
"nuclei_histiocyte": {
"FN": 26,
"FP": 5,
"TP": 14,
"recall": 0.35,
"f1_score": 0.47457627118644063,
"precision": 0.7368421052631579
},
"nuclei_lymphocyte": {
"FN": 7,
"FP": 6,
"TP": 7,
"recall": 0.5,
"f1_score": 0.5185185185185186,
"precision": 0.5384615384615384
},
"nuclei_endothelium": {
"FN": 24,
"FP": 15,
"TP": 12,
"recall": 0.3333333333333333,
"f1_score": 0.380952380952381,
"precision": 0.4444444444444444
},
"nuclei_melanophage": {
"FN": 4,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.8229260658253728,
"tissue_tumor": 0.6682657104645483,
"tissue_stroma": 0.8413947347920349,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.9398868465722015,
"tissue_blood_vessel": 0.6650830372980787
}
},
{
"filename": "final_test_set_primary_roi_047.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5999578451940806
},
"micro": {
"recall": 0.8041666666666667,
"f1_score": 0.8143459915611814,
"precision": 0.8247863247863247
},
"nuclei_tumor": {
"FN": 30,
"FP": 9,
"TP": 106,
"recall": 0.7794117647058824,
"f1_score": 0.8446215139442231,
"precision": 0.9217391304347826
},
"nuclei_stroma": {
"FN": 1,
"FP": 12,
"TP": 3,
"recall": 0.75,
"f1_score": 0.31578947368421056,
"precision": 0.2
},
"nuclei_epithelium": {
"FN": 12,
"FP": 19,
"TP": 81,
"recall": 0.8709677419354839,
"f1_score": 0.8393782383419689,
"precision": 0.81
},
"nuclei_lymphocyte": {
"FN": 4,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_endothelium": {
"FN": 0,
"FP": 0,
"TP": 3,
"recall": 1.0,
"f1_score": 1.0,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.786363918016808,
"tissue_tumor": 0.9191451707431145,
"tissue_stroma": 0.47977268031298004,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.9640197119164867,
"tissue_blood_vessel": 0.5688820271114591
}
}
],
"aggregates": {
"f1_nuclei": {
"nuclei_tumor": 0.7400190452938823,
"nuclei_stroma": 0.25989299182774384,
"nuclei_apoptosis": 0.10640906257287802,
"nuclei_epithelium": 0.06853122801595615,
"nuclei_histiocyte": 0.21100280414415848,
"nuclei_lymphocyte": 0.6255598656047182,
"nuclei_neutrophil": 0.045769575524814685,
"nuclei_endothelium": 0.1802273039774086,
"nuclei_melanophage": 0.1446858093921169,
"nuclei_plasma_cell": 0.09046996924936455
},
"dice_tissue": {
"average_dice": 0.6810265094303987,
"tissue_tumor": 0.8478241664891891,
"tissue_stroma": 0.5471299853884944,
"tissue_necrosis": 0.8580078962482627,
"tissue_epidermis": 0.714340921989365,
"tissue_blood_vessel": 0.4378295770366842
},
"macro_f1_nuclei": 0.24725676556030413,
"micro_dice_tissue": {
"tissue_tumor": 0.8975167421894799,
"tissue_stroma": 0.7611637772259465,
"tissue_necrosis": 0.07617871994131868,
"tissue_epidermis": 0.7928168471989627,
"average_micro_dice": 0.5937375694476043,
"tissue_blood_vessel": 0.44101176068231374
}
}
}