Evaluation
- ID
- 49e7e424-add6-475c-94f2-bf63e039c4fd
- Submission ID
- f545149e-26cf-4615-91cb-8405c903edf6
- Method ID
- b65f6cbb-4862-4706-8e8c-6a803509d88c
- Status
-
Succeeded
- User
-
rictoo
- Challenge
-
PUMA
- Phase
-
Track 1: Final test phase
- Algorithm
-
melanomore3cls
(Image Version c8bd91ff-a4dc-4c7d-ab4d-ac94c103b7d1
)
- Submission created
- March 16, 2025, 2:06 a.m.
- Result created
- March 16, 2025, 2:06 a.m.
- Position on leaderboard
-
2
- Comment:
- herewego
Metrics
{
"results": [
{
"filename": "final_test_set_metastatic_roi_001.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6642728166481923
},
"micro": {
"recall": 0.8362989323843416,
"f1_score": 0.8216783216783216,
"precision": 0.8075601374570447
},
"nuclei_other": {
"FN": 4,
"FP": 27,
"TP": 5,
"recall": 0.5555555555555556,
"f1_score": 0.24390243902439024,
"precision": 0.15625
},
"nuclei_tumor": {
"FN": 37,
"FP": 28,
"TP": 207,
"recall": 0.8483606557377049,
"f1_score": 0.8643006263048018,
"precision": 0.8808510638297873
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 1,
"TP": 23,
"recall": 0.8214285714285714,
"f1_score": 0.8846153846153847,
"precision": 0.9583333333333334
}
},
"tissue_metrics": {
"average_dice": 0.5351218979593069,
"tissue_tumor": 0.993311150196187,
"tissue_stroma": 5.043627374265584e-10,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6822958391022346
}
},
{
"filename": "final_test_set_metastatic_roi_002.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5483466210782512
},
"micro": {
"recall": 0.8723404255319149,
"f1_score": 0.8569562377531025,
"precision": 0.8421052631578947
},
"nuclei_other": {
"FN": 4,
"FP": 24,
"TP": 1,
"recall": 0.2,
"f1_score": 0.06666666666666667,
"precision": 0.04
},
"nuclei_tumor": {
"FN": 85,
"FP": 57,
"TP": 602,
"recall": 0.87627365356623,
"f1_score": 0.8945022288261515,
"precision": 0.91350531107739
},
"nuclei_lymphocyte": {
"FN": 7,
"FP": 42,
"TP": 53,
"recall": 0.8833333333333333,
"f1_score": 0.6838709677419355,
"precision": 0.5578947368421052
}
},
"tissue_metrics": {
"average_dice": 0.5976736758385471,
"tissue_tumor": 0.9883682844365766,
"tissue_stroma": 4.165451741506456e-10,
"tissue_necrosis": 9.433961374154588e-08,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_003.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6185157959903078
},
"micro": {
"recall": 0.8273381294964028,
"f1_score": 0.847145488029466,
"precision": 0.8679245283018868
},
"nuclei_other": {
"FN": 14,
"FP": 19,
"TP": 17,
"recall": 0.5483870967741935,
"f1_score": 0.5074626865671641,
"precision": 0.4722222222222222
},
"nuclei_tumor": {
"FN": 32,
"FP": 13,
"TP": 211,
"recall": 0.8683127572016461,
"f1_score": 0.9036402569593148,
"precision": 0.9419642857142857
},
"nuclei_lymphocyte": {
"FN": 2,
"FP": 3,
"TP": 2,
"recall": 0.5,
"f1_score": 0.4444444444444445,
"precision": 0.4
}
},
"tissue_metrics": {
"average_dice": 0.3992950108948984,
"tissue_tumor": 0.9964717186574705,
"tissue_stroma": 7.688759028380164e-10,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.725923366023605e-09
}
},
{
"filename": "final_test_set_metastatic_roi_004.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.47506854539289706
},
"micro": {
"recall": 0.6356164383561644,
"f1_score": 0.729559748427673,
"precision": 0.8560885608856088
},
"nuclei_other": {
"FN": 84,
"FP": 11,
"TP": 7,
"recall": 0.07692307692307693,
"f1_score": 0.12844036697247707,
"precision": 0.3888888888888889
},
"nuclei_tumor": {
"FN": 149,
"FP": 33,
"TP": 427,
"recall": 0.7413194444444444,
"f1_score": 0.8243243243243245,
"precision": 0.9282608695652174
},
"nuclei_lymphocyte": {
"FN": 33,
"FP": 34,
"TP": 30,
"recall": 0.47619047619047616,
"f1_score": 0.47244094488188976,
"precision": 0.46875
}
},
"tissue_metrics": {
"average_dice": 0.6052468299293268,
"tissue_tumor": 0.9556564333054705,
"tissue_stroma": 0.07057521634741352,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_005.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7774303184806363
},
"micro": {
"recall": 0.8093699515347335,
"f1_score": 0.8166259168704157,
"precision": 0.8240131578947368
},
"nuclei_other": {
"FN": 73,
"FP": 24,
"TP": 77,
"recall": 0.5133333333333333,
"f1_score": 0.6135458167330676,
"precision": 0.7623762376237624
},
"nuclei_tumor": {
"FN": 21,
"FP": 59,
"TP": 163,
"recall": 0.8858695652173914,
"f1_score": 0.8029556650246306,
"precision": 0.7342342342342343
},
"nuclei_lymphocyte": {
"FN": 24,
"FP": 24,
"TP": 261,
"recall": 0.9157894736842105,
"f1_score": 0.9157894736842105,
"precision": 0.9157894736842105
}
},
"tissue_metrics": {
"average_dice": 0.7480085273974606,
"tissue_tumor": 0.8819476351627255,
"tissue_stroma": 0.8580900018495774,
"tissue_necrosis": 4.9999750001249995e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_006.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6044805194805195
},
"micro": {
"recall": 0.8763358778625954,
"f1_score": 0.9018067556952081,
"precision": 0.9288025889967637
},
"nuclei_other": {
"FN": 5,
"FP": 0,
"TP": 1,
"recall": 0.16666666666666666,
"f1_score": 0.2857142857142857,
"precision": 1.0
},
"nuclei_tumor": {
"FN": 55,
"FP": 39,
"TP": 553,
"recall": 0.9095394736842105,
"f1_score": 0.9216666666666666,
"precision": 0.9341216216216216
},
"nuclei_lymphocyte": {
"FN": 21,
"FP": 5,
"TP": 20,
"recall": 0.4878048780487805,
"f1_score": 0.6060606060606061,
"precision": 0.8
}
},
"tissue_metrics": {
"average_dice": 0.5996179188561732,
"tissue_tumor": 0.9980870917871164,
"tissue_stroma": 1.0,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.49999999375e-09
}
},
{
"filename": "final_test_set_metastatic_roi_007.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.41227286267500746
},
"micro": {
"recall": 0.8546365914786967,
"f1_score": 0.8766066838046273,
"precision": 0.899736147757256
},
"nuclei_other": {
"FN": 3,
"FP": 5,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_tumor": {
"FN": 40,
"FP": 32,
"TP": 337,
"recall": 0.8938992042440318,
"f1_score": 0.903485254691689,
"precision": 0.9132791327913279
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 1,
"TP": 4,
"recall": 0.21052631578947367,
"f1_score": 0.3333333333333333,
"precision": 0.8
}
},
"tissue_metrics": {
"average_dice": 0.5998906735505537,
"tissue_tumor": 0.9994508590406233,
"tissue_stroma": 8.718395739159585e-09,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_008.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5635154400862824
},
"micro": {
"recall": 0.783625730994152,
"f1_score": 0.788235294117647,
"precision": 0.7928994082840237
},
"nuclei_other": {
"FN": 78,
"FP": 6,
"TP": 39,
"recall": 0.3333333333333333,
"f1_score": 0.48148148148148145,
"precision": 0.8666666666666667
},
"nuclei_tumor": {
"FN": 23,
"FP": 98,
"TP": 360,
"recall": 0.9399477806788512,
"f1_score": 0.8561236623067777,
"precision": 0.7860262008733624
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 1,
"TP": 3,
"recall": 0.23076923076923078,
"f1_score": 0.3529411764705882,
"precision": 0.75
}
},
"tissue_metrics": {
"average_dice": 0.591449107188828,
"tissue_tumor": 0.8766264445652999,
"tissue_stroma": 0.713842996635961,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 0.3667735947491292,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_009.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6277789428887147
},
"micro": {
"recall": 0.8175182481751825,
"f1_score": 0.8175182481751826,
"precision": 0.8175182481751825
},
"nuclei_other": {
"FN": 7,
"FP": 7,
"TP": 2,
"recall": 0.2222222222222222,
"f1_score": 0.2222222222222222,
"precision": 0.2222222222222222
},
"nuclei_tumor": {
"FN": 38,
"FP": 47,
"TP": 210,
"recall": 0.8467741935483871,
"f1_score": 0.8316831683168316,
"precision": 0.8171206225680934
},
"nuclei_lymphocyte": {
"FN": 30,
"FP": 21,
"TP": 124,
"recall": 0.8051948051948052,
"f1_score": 0.8294314381270904,
"precision": 0.8551724137931035
}
},
"tissue_metrics": {
"average_dice": 0.4365570870784626,
"tissue_tumor": 0.9709948935866327,
"tissue_stroma": 0.2117880406469724,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.1649580601526586e-09
}
},
{
"filename": "final_test_set_metastatic_roi_010.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7012390087929656
},
"micro": {
"recall": 0.8755760368663594,
"f1_score": 0.8333333333333333,
"precision": 0.7949790794979079
},
"nuclei_other": {
"FN": 1,
"FP": 4,
"TP": 5,
"recall": 0.8333333333333334,
"f1_score": 0.6666666666666667,
"precision": 0.5555555555555556
},
"nuclei_tumor": {
"FN": 20,
"FP": 41,
"TP": 178,
"recall": 0.898989898989899,
"f1_score": 0.8537170263788968,
"precision": 0.8127853881278538
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 4,
"TP": 7,
"recall": 0.5384615384615384,
"f1_score": 0.5833333333333334,
"precision": 0.6363636363636364
}
},
"tissue_metrics": {
"average_dice": 0.6538839034494668,
"tissue_tumor": 0.9651855539676849,
"tissue_stroma": 1.1990120139566185e-10,
"tissue_necrosis": 0.30423396315974816,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_011.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6259857818821862
},
"micro": {
"recall": 0.7314814814814815,
"f1_score": 0.7577937649880095,
"precision": 0.7860696517412935
},
"nuclei_other": {
"FN": 17,
"FP": 15,
"TP": 6,
"recall": 0.2608695652173913,
"f1_score": 0.2727272727272727,
"precision": 0.2857142857142857
},
"nuclei_tumor": {
"FN": 36,
"FP": 15,
"TP": 120,
"recall": 0.7692307692307693,
"f1_score": 0.8247422680412372,
"precision": 0.8888888888888888
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 13,
"TP": 32,
"recall": 0.8648648648648649,
"f1_score": 0.7804878048780488,
"precision": 0.7111111111111111
}
},
"tissue_metrics": {
"average_dice": 0.6474393095915604,
"tissue_tumor": 0.9448822944691873,
"tissue_stroma": 0.292311753494865,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_012.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7103189401809576
},
"micro": {
"recall": 0.8028455284552846,
"f1_score": 0.8069458631256383,
"precision": 0.811088295687885
},
"nuclei_other": {
"FN": 6,
"FP": 66,
"TP": 26,
"recall": 0.8125,
"f1_score": 0.41935483870967744,
"precision": 0.2826086956521739
},
"nuclei_tumor": {
"FN": 40,
"FP": 20,
"TP": 138,
"recall": 0.7752808988764045,
"f1_score": 0.8214285714285714,
"precision": 0.8734177215189873
},
"nuclei_lymphocyte": {
"FN": 51,
"FP": 6,
"TP": 231,
"recall": 0.8191489361702128,
"f1_score": 0.8901734104046243,
"precision": 0.9746835443037974
}
},
"tissue_metrics": {
"average_dice": 0.3783666019900236,
"tissue_tumor": 0.9549001886419559,
"tissue_stroma": 0.9369294413555418,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 4.587155752882764e-08,
"tissue_blood_vessel": 7.588404911527998e-10
}
},
{
"filename": "final_test_set_metastatic_roi_013.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.45847063347751194
},
"micro": {
"recall": 0.43253234750462105,
"f1_score": 0.446139180171592,
"precision": 0.46062992125984253
},
"nuclei_other": {
"FN": 277,
"FP": 11,
"TP": 97,
"recall": 0.25935828877005346,
"f1_score": 0.40248962655601656,
"precision": 0.8981481481481481
},
"nuclei_tumor": {
"FN": 13,
"FP": 179,
"TP": 87,
"recall": 0.87,
"f1_score": 0.47540983606557385,
"precision": 0.32706766917293234
},
"nuclei_lymphocyte": {
"FN": 17,
"FP": 84,
"TP": 50,
"recall": 0.746268656716418,
"f1_score": 0.4975124378109453,
"precision": 0.373134328358209
}
},
"tissue_metrics": {
"average_dice": 0.4407192761983273,
"tissue_tumor": 0.5995824368698828,
"tissue_stroma": 0.6040106081967205,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.602811029144167e-09
}
},
{
"filename": "final_test_set_metastatic_roi_014.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7773400587409015
},
"micro": {
"recall": 0.8466666666666667,
"f1_score": 0.8480801335559266,
"precision": 0.8494983277591973
},
"nuclei_other": {
"FN": 8,
"FP": 28,
"TP": 22,
"recall": 0.7333333333333333,
"f1_score": 0.5499999999999999,
"precision": 0.44
},
"nuclei_tumor": {
"FN": 21,
"FP": 11,
"TP": 148,
"recall": 0.8757396449704142,
"f1_score": 0.9024390243902439,
"precision": 0.9308176100628931
},
"nuclei_lymphocyte": {
"FN": 17,
"FP": 6,
"TP": 84,
"recall": 0.8316831683168316,
"f1_score": 0.8795811518324607,
"precision": 0.9333333333333333
}
},
"tissue_metrics": {
"average_dice": 0.5660653066160373,
"tissue_tumor": 0.9742490556480805,
"tissue_stroma": 0.8560741375135774,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 6.59630602509033e-09
}
},
{
"filename": "final_test_set_metastatic_roi_015.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6984962004385435
},
"micro": {
"recall": 0.8723404255319149,
"f1_score": 0.8803680981595092,
"precision": 0.8885448916408669
},
"nuclei_other": {
"FN": 6,
"FP": 21,
"TP": 5,
"recall": 0.45454545454545453,
"f1_score": 0.27027027027027023,
"precision": 0.19230769230769232
},
"nuclei_tumor": {
"FN": 28,
"FP": 9,
"TP": 216,
"recall": 0.8852459016393442,
"f1_score": 0.9211087420042643,
"precision": 0.96
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 6,
"TP": 66,
"recall": 0.8918918918918919,
"f1_score": 0.9041095890410958,
"precision": 0.9166666666666666
}
},
"tissue_metrics": {
"average_dice": 0.7639446701345736,
"tissue_tumor": 0.9757497223251984,
"tissue_stroma": 0.8439711283539197,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_016.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.50387902695595
},
"micro": {
"recall": 0.77079107505071,
"f1_score": 0.7778915046059367,
"precision": 0.7851239669421488
},
"nuclei_other": {
"FN": 45,
"FP": 5,
"TP": 5,
"recall": 0.1,
"f1_score": 0.16666666666666669,
"precision": 0.5
},
"nuclei_tumor": {
"FN": 62,
"FP": 69,
"TP": 357,
"recall": 0.8520286396181385,
"f1_score": 0.8449704142011835,
"precision": 0.8380281690140845
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 30,
"TP": 18,
"recall": 0.75,
"f1_score": 0.5,
"precision": 0.375
}
},
"tissue_metrics": {
"average_dice": 0.6980419456421425,
"tissue_tumor": 0.9721771845162522,
"tissue_stroma": 0.518032541096383,
"tissue_necrosis": 2.5980774159571906e-09,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_017.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6256296553922848
},
"micro": {
"recall": 0.8051948051948052,
"f1_score": 0.8458390177353343,
"precision": 0.8908045977011494
},
"nuclei_other": {
"FN": 3,
"FP": 2,
"TP": 1,
"recall": 0.25,
"f1_score": 0.28571428571428575,
"precision": 0.3333333333333333
},
"nuclei_tumor": {
"FN": 65,
"FP": 13,
"TP": 271,
"recall": 0.8065476190476191,
"f1_score": 0.8741935483870967,
"precision": 0.954225352112676
},
"nuclei_lymphocyte": {
"FN": 7,
"FP": 23,
"TP": 38,
"recall": 0.8444444444444444,
"f1_score": 0.7169811320754719,
"precision": 0.6229508196721312
}
},
"tissue_metrics": {
"average_dice": 0.599685387749194,
"tissue_tumor": 0.9984244357173191,
"tissue_stroma": 3.034901356494988e-09,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_018.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7201167716184885
},
"micro": {
"recall": 0.7982456140350878,
"f1_score": 0.8198198198198198,
"precision": 0.8425925925925926
},
"nuclei_other": {
"FN": 43,
"FP": 40,
"TP": 34,
"recall": 0.44155844155844154,
"f1_score": 0.4503311258278146,
"precision": 0.4594594594594595
},
"nuclei_tumor": {
"FN": 40,
"FP": 40,
"TP": 343,
"recall": 0.8955613577023499,
"f1_score": 0.8955613577023499,
"precision": 0.8955613577023499
},
"nuclei_lymphocyte": {
"FN": 55,
"FP": 22,
"TP": 169,
"recall": 0.7544642857142857,
"f1_score": 0.8144578313253011,
"precision": 0.8848167539267016
}
},
"tissue_metrics": {
"average_dice": 0.5510632790602907,
"tissue_tumor": 0.9372906120778544,
"tissue_stroma": 0.8180232821078931,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.1219566912128838e-09
}
},
{
"filename": "final_test_set_metastatic_roi_019.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7145146783444655
},
"micro": {
"recall": 0.819078947368421,
"f1_score": 0.7955271565495208,
"precision": 0.7732919254658385
},
"nuclei_other": {
"FN": 13,
"FP": 20,
"TP": 16,
"recall": 0.5517241379310345,
"f1_score": 0.4923076923076923,
"precision": 0.4444444444444444
},
"nuclei_tumor": {
"FN": 22,
"FP": 38,
"TP": 158,
"recall": 0.8777777777777778,
"f1_score": 0.8404255319148936,
"precision": 0.8061224489795918
},
"nuclei_lymphocyte": {
"FN": 20,
"FP": 15,
"TP": 75,
"recall": 0.7894736842105263,
"f1_score": 0.8108108108108109,
"precision": 0.8333333333333334
}
},
"tissue_metrics": {
"average_dice": 0.6011545133672449,
"tissue_tumor": 0.942482370691277,
"tissue_stroma": 0.06328769615119745,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_020.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7356366409451058
},
"micro": {
"recall": 0.8251001335113485,
"f1_score": 0.8631284916201117,
"precision": 0.9048316251830161
},
"nuclei_other": {
"FN": 5,
"FP": 41,
"TP": 18,
"recall": 0.782608695652174,
"f1_score": 0.4390243902439025,
"precision": 0.3050847457627119
},
"nuclei_tumor": {
"FN": 36,
"FP": 19,
"TP": 185,
"recall": 0.8371040723981901,
"f1_score": 0.8705882352941177,
"precision": 0.9068627450980392
},
"nuclei_lymphocyte": {
"FN": 90,
"FP": 5,
"TP": 415,
"recall": 0.8217821782178217,
"f1_score": 0.8972972972972973,
"precision": 0.9880952380952381
}
},
"tissue_metrics": {
"average_dice": 0.7320397219011828,
"tissue_tumor": 0.9604456299216388,
"tissue_stroma": 0.9358984040993071,
"tissue_necrosis": 4.9999750001249995e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7638495755099678
}
},
{
"filename": "final_test_set_metastatic_roi_021.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.667042308741758
},
"micro": {
"recall": 0.7282051282051282,
"f1_score": 0.7624161073825503,
"precision": 0.8
},
"nuclei_other": {
"FN": 46,
"FP": 4,
"TP": 16,
"recall": 0.25806451612903225,
"f1_score": 0.3902439024390244,
"precision": 0.8
},
"nuclei_tumor": {
"FN": 48,
"FP": 39,
"TP": 189,
"recall": 0.7974683544303798,
"f1_score": 0.8129032258064517,
"precision": 0.8289473684210527
},
"nuclei_lymphocyte": {
"FN": 12,
"FP": 28,
"TP": 79,
"recall": 0.8681318681318682,
"f1_score": 0.797979797979798,
"precision": 0.7383177570093458
}
},
"tissue_metrics": {
"average_dice": 0.2875988979652215,
"tissue_tumor": 0.9172599156543625,
"tissue_stroma": 0.5207311304241311,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 2.1929824080486317e-08,
"tissue_blood_vessel": 8.84955673897728e-08
}
},
{
"filename": "final_test_set_metastatic_roi_022.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6396237507348618
},
"micro": {
"recall": 0.8646864686468647,
"f1_score": 0.9144851657940662,
"precision": 0.9703703703703703
},
"nuclei_other": {
"FN": 3,
"FP": 1,
"TP": 1,
"recall": 0.25,
"f1_score": 0.3333333333333333,
"precision": 0.5
},
"nuclei_tumor": {
"FN": 79,
"FP": 13,
"TP": 521,
"recall": 0.8683333333333333,
"f1_score": 0.9188712522045855,
"precision": 0.9756554307116105
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 2,
"TP": 2,
"recall": 1.0,
"f1_score": 0.6666666666666666,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.8000001185282958,
"tissue_tumor": 0.9999980926477292,
"tissue_stroma": 1.0,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_023.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6512096774193549
},
"micro": {
"recall": 0.9112903225806451,
"f1_score": 0.9168356997971602,
"precision": 0.9224489795918367
},
"nuclei_other": {
"FN": 5,
"FP": 10,
"TP": 8,
"recall": 0.6153846153846154,
"f1_score": 0.5161290322580646,
"precision": 0.4444444444444444
},
"nuclei_tumor": {
"FN": 43,
"FP": 45,
"TP": 660,
"recall": 0.9388335704125178,
"f1_score": 0.9374999999999999,
"precision": 0.9361702127659575
},
"nuclei_lymphocyte": {
"FN": 18,
"FP": 2,
"TP": 10,
"recall": 0.35714285714285715,
"f1_score": 0.5,
"precision": 0.8333333333333334
}
},
"tissue_metrics": {
"average_dice": 0.30485167139867175,
"tissue_tumor": 0.9750205357057737,
"tissue_stroma": 1.4037057812974373e-09,
"tissue_necrosis": 2.5641019066405367e-07,
"tissue_epidermis": 1.7921146632237517e-08,
"tissue_blood_vessel": 0.549237545552542
}
},
{
"filename": "final_test_set_metastatic_roi_024.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7767864723593835
},
"micro": {
"recall": 0.8107416879795396,
"f1_score": 0.8020240354206198,
"precision": 0.7934918648310388
},
"nuclei_other": {
"FN": 80,
"FP": 61,
"TP": 104,
"recall": 0.5652173913043478,
"f1_score": 0.5959885386819485,
"precision": 0.6303030303030303
},
"nuclei_tumor": {
"FN": 22,
"FP": 18,
"TP": 150,
"recall": 0.872093023255814,
"f1_score": 0.8823529411764706,
"precision": 0.8928571428571429
},
"nuclei_lymphocyte": {
"FN": 46,
"FP": 86,
"TP": 380,
"recall": 0.892018779342723,
"f1_score": 0.8520179372197311,
"precision": 0.8154506437768241
}
},
"tissue_metrics": {
"average_dice": 0.6617211261460382,
"tissue_tumor": 0.9302641865194393,
"tissue_stroma": 0.9341427691448936,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.44419617507210823
}
},
{
"filename": "final_test_set_metastatic_roi_025.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7482119320242028
},
"micro": {
"recall": 0.8037825059101655,
"f1_score": 0.7971864009378664,
"precision": 0.7906976744186046
},
"nuclei_other": {
"FN": 31,
"FP": 39,
"TP": 41,
"recall": 0.5694444444444444,
"f1_score": 0.5394736842105262,
"precision": 0.5125
},
"nuclei_tumor": {
"FN": 34,
"FP": 18,
"TP": 140,
"recall": 0.8045977011494253,
"f1_score": 0.8433734939759037,
"precision": 0.8860759493670886
},
"nuclei_lymphocyte": {
"FN": 18,
"FP": 33,
"TP": 159,
"recall": 0.8983050847457628,
"f1_score": 0.8617886178861789,
"precision": 0.828125
}
},
"tissue_metrics": {
"average_dice": 0.6528363919796301,
"tissue_tumor": 0.964694748139106,
"tissue_stroma": 0.8617026782791327,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.437781200157689
}
},
{
"filename": "final_test_set_metastatic_roi_026.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7445775582897397
},
"micro": {
"recall": 0.78125,
"f1_score": 0.7839721254355401,
"precision": 0.7867132867132867
},
"nuclei_other": {
"FN": 13,
"FP": 37,
"TP": 28,
"recall": 0.6829268292682927,
"f1_score": 0.5283018867924528,
"precision": 0.4307692307692308
},
"nuclei_tumor": {
"FN": 40,
"FP": 16,
"TP": 127,
"recall": 0.7604790419161677,
"f1_score": 0.8193548387096774,
"precision": 0.8881118881118881
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 8,
"TP": 70,
"recall": 0.875,
"f1_score": 0.8860759493670887,
"precision": 0.8974358974358975
}
},
"tissue_metrics": {
"average_dice": 0.2194805817514161,
"tissue_tumor": 0.9607217390020577,
"tissue_stroma": 0.13667999937125086,
"tissue_necrosis": 1.1111098765445817e-06,
"tissue_epidermis": 5.88235259515573e-08,
"tissue_blood_vessel": 4.503693026254868e-10
}
},
{
"filename": "final_test_set_metastatic_roi_027.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8975848427080919
},
"micro": {
"recall": 0.9442724458204335,
"f1_score": 0.9270516717325228,
"precision": 0.9104477611940298
},
"nuclei_other": {
"FN": 1,
"FP": 0,
"TP": 4,
"recall": 0.8,
"f1_score": 0.888888888888889,
"precision": 1.0
},
"nuclei_tumor": {
"FN": 12,
"FP": 24,
"TP": 265,
"recall": 0.9566787003610109,
"f1_score": 0.9363957597173145,
"precision": 0.916955017301038
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 6,
"TP": 36,
"recall": 0.8780487804878049,
"f1_score": 0.8674698795180722,
"precision": 0.8571428571428571
}
},
"tissue_metrics": {
"average_dice": 0.5205620171111806,
"tissue_tumor": 0.978919964146622,
"tissue_stroma": 0.6238767881870573,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 9.99990000099999e-06,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_028.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5506012024048096
},
"micro": {
"recall": 0.8636363636363636,
"f1_score": 0.8587570621468926,
"precision": 0.8539325842696629
},
"nuclei_other": {
"FN": 0,
"FP": 2,
"TP": 3,
"recall": 1.0,
"f1_score": 0.7499999999999999,
"precision": 0.6
},
"nuclei_tumor": {
"FN": 36,
"FP": 13,
"TP": 225,
"recall": 0.8620689655172413,
"f1_score": 0.9018036072144288,
"precision": 0.9453781512605042
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 24,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.5990364794453213,
"tissue_tumor": 0.9951798962384256,
"tissue_stroma": 9.944311843730797e-10,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_029.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5575104550687636
},
"micro": {
"recall": 0.8611898016997167,
"f1_score": 0.8432732316227461,
"precision": 0.8260869565217391
},
"nuclei_other": {
"FN": 27,
"FP": 6,
"TP": 4,
"recall": 0.12903225806451613,
"f1_score": 0.1951219512195122,
"precision": 0.4
},
"nuclei_tumor": {
"FN": 16,
"FP": 51,
"TP": 291,
"recall": 0.9478827361563518,
"f1_score": 0.8967642526964561,
"precision": 0.8508771929824561
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 7,
"TP": 9,
"recall": 0.6,
"f1_score": 0.5806451612903225,
"precision": 0.5625
}
},
"tissue_metrics": {
"average_dice": 0.599360450395041,
"tissue_tumor": 0.9967997504857931,
"tissue_stroma": 1.495662576285279e-09,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_030.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7408388360896213
},
"micro": {
"recall": 0.8530534351145038,
"f1_score": 0.882527147087858,
"precision": 0.9141104294478528
},
"nuclei_other": {
"FN": 28,
"FP": 5,
"TP": 12,
"recall": 0.3,
"f1_score": 0.42105263157894735,
"precision": 0.7058823529411765
},
"nuclei_tumor": {
"FN": 39,
"FP": 18,
"TP": 327,
"recall": 0.8934426229508197,
"f1_score": 0.9198312236286921,
"precision": 0.9478260869565217
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 19,
"TP": 108,
"recall": 0.9152542372881356,
"f1_score": 0.8816326530612245,
"precision": 0.8503937007874016
}
},
"tissue_metrics": {
"average_dice": 0.7571597623766918,
"tissue_tumor": 0.9881070896226909,
"tissue_stroma": 0.9134748562932388,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.884213532645307
}
},
{
"filename": "final_test_set_metastatic_roi_031.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6490147169688663
},
"micro": {
"recall": 0.8100502512562814,
"f1_score": 0.8092369477911647,
"precision": 0.8084252758274825
},
"nuclei_other": {
"FN": 98,
"FP": 11,
"TP": 18,
"recall": 0.15517241379310345,
"f1_score": 0.24827586206896554,
"precision": 0.6206896551724138
},
"nuclei_tumor": {
"FN": 40,
"FP": 78,
"TP": 294,
"recall": 0.8802395209580839,
"f1_score": 0.8328611898016997,
"precision": 0.7903225806451613
},
"nuclei_lymphocyte": {
"FN": 51,
"FP": 102,
"TP": 494,
"recall": 0.9064220183486239,
"f1_score": 0.8659070990359334,
"precision": 0.8288590604026845
}
},
"tissue_metrics": {
"average_dice": 0.7769773528313589,
"tissue_tumor": 0.9479388376014873,
"tissue_stroma": 0.9369445932330848,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_032.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7963511483869672
},
"micro": {
"recall": 0.8531810766721044,
"f1_score": 0.855973813420622,
"precision": 0.8587848932676518
},
"nuclei_other": {
"FN": 12,
"FP": 23,
"TP": 31,
"recall": 0.7209302325581395,
"f1_score": 0.6391752577319588,
"precision": 0.5740740740740741
},
"nuclei_tumor": {
"FN": 40,
"FP": 18,
"TP": 206,
"recall": 0.8373983739837398,
"f1_score": 0.876595744680851,
"precision": 0.9196428571428571
},
"nuclei_lymphocyte": {
"FN": 38,
"FP": 45,
"TP": 286,
"recall": 0.8827160493827161,
"f1_score": 0.8732824427480916,
"precision": 0.8640483383685801
}
},
"tissue_metrics": {
"average_dice": 0.5668500393621165,
"tissue_tumor": 0.9709239622263616,
"tissue_stroma": 0.8633212343393227,
"tissue_necrosis": 4.9999750001249995e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.6989824828752306e-10
}
},
{
"filename": "final_test_set_metastatic_roi_033.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5650696568127761
},
"micro": {
"recall": 0.8550185873605948,
"f1_score": 0.8914728682170543,
"precision": 0.9311740890688259
},
"nuclei_other": {
"FN": 11,
"FP": 4,
"TP": 6,
"recall": 0.35294117647058826,
"f1_score": 0.4444444444444445,
"precision": 0.6
},
"nuclei_tumor": {
"FN": 53,
"FP": 28,
"TP": 450,
"recall": 0.8946322067594433,
"f1_score": 0.9174311926605505,
"precision": 0.9414225941422594
},
"nuclei_lymphocyte": {
"FN": 14,
"FP": 2,
"TP": 4,
"recall": 0.2222222222222222,
"f1_score": 0.3333333333333333,
"precision": 0.6666666666666666
}
},
"tissue_metrics": {
"average_dice": 0.5129031088022001,
"tissue_tumor": 0.9926153855108644,
"tissue_stroma": 1.063829674060673e-07,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5718975521234193
}
},
{
"filename": "final_test_set_metastatic_roi_034.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5722934860726964
},
"micro": {
"recall": 0.89,
"f1_score": 0.9108187134502925,
"precision": 0.9326347305389222
},
"nuclei_other": {
"FN": 6,
"FP": 15,
"TP": 8,
"recall": 0.5714285714285714,
"f1_score": 0.4324324324324324,
"precision": 0.34782608695652173
},
"nuclei_tumor": {
"FN": 63,
"FP": 27,
"TP": 612,
"recall": 0.9066666666666666,
"f1_score": 0.9315068493150686,
"precision": 0.9577464788732394
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 3,
"TP": 3,
"recall": 0.2727272727272727,
"f1_score": 0.3529411764705882,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.5977169192339516,
"tissue_tumor": 0.9331171493029263,
"tissue_stroma": 1.0,
"tissue_necrosis": 0.340544641308428,
"tissue_epidermis": 7.936507306626405e-08,
"tissue_blood_vessel": 0.7149227261933309
}
},
{
"filename": "final_test_set_metastatic_roi_035.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7177506654506899
},
"micro": {
"recall": 0.8171428571428572,
"f1_score": 0.8056338028169014,
"precision": 0.7944444444444444
},
"nuclei_other": {
"FN": 24,
"FP": 32,
"TP": 39,
"recall": 0.6190476190476191,
"f1_score": 0.582089552238806,
"precision": 0.5492957746478874
},
"nuclei_tumor": {
"FN": 16,
"FP": 38,
"TP": 217,
"recall": 0.9313304721030042,
"f1_score": 0.8893442622950819,
"precision": 0.8509803921568627
},
"nuclei_lymphocyte": {
"FN": 24,
"FP": 4,
"TP": 30,
"recall": 0.5555555555555556,
"f1_score": 0.6818181818181819,
"precision": 0.8823529411764706
}
},
"tissue_metrics": {
"average_dice": 0.7272902805102209,
"tissue_tumor": 0.894019287908786,
"tissue_stroma": 0.7424321096671941,
"tissue_necrosis": 4.9751243533575904e-09,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_036.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5621631969370663
},
"micro": {
"recall": 0.8229166666666666,
"f1_score": 0.8197146562905318,
"precision": 0.8165374677002584
},
"nuclei_other": {
"FN": 13,
"FP": 10,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_tumor": {
"FN": 40,
"FP": 24,
"TP": 143,
"recall": 0.7814207650273224,
"f1_score": 0.8171428571428572,
"precision": 0.8562874251497006
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 37,
"TP": 173,
"recall": 0.9202127659574468,
"f1_score": 0.8693467336683418,
"precision": 0.8238095238095238
}
},
"tissue_metrics": {
"average_dice": 0.5705586304140897,
"tissue_tumor": 0.9716509843755569,
"tissue_stroma": 0.8811388213687685,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.3003901001249663e-08
}
},
{
"filename": "final_test_set_metastatic_roi_037.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3738590726542534
},
"micro": {
"recall": 0.8973966309341501,
"f1_score": 0.9264822134387353,
"precision": 0.9575163398692811
},
"nuclei_other": {
"FN": 9,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_tumor": {
"FN": 49,
"FP": 26,
"TP": 585,
"recall": 0.9227129337539433,
"f1_score": 0.9397590361445783,
"precision": 0.9574468085106383
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 0,
"TP": 1,
"recall": 0.1,
"f1_score": 0.18181818181818182,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.5177264378694642,
"tissue_tumor": 0.9946044098075362,
"tissue_stroma": 0.5940252784488218,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0972130775760225e-09
}
},
{
"filename": "final_test_set_metastatic_roi_038.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5078458337741104
},
"micro": {
"recall": 0.828693790149893,
"f1_score": 0.8686868686868687,
"precision": 0.9127358490566038
},
"nuclei_other": {
"FN": 19,
"FP": 11,
"TP": 8,
"recall": 0.2962962962962963,
"f1_score": 0.34782608695652173,
"precision": 0.42105263157894735
},
"nuclei_tumor": {
"FN": 48,
"FP": 22,
"TP": 376,
"recall": 0.8867924528301887,
"f1_score": 0.9148418491484185,
"precision": 0.9447236180904522
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 4,
"TP": 3,
"recall": 0.1875,
"f1_score": 0.26086956521739124,
"precision": 0.42857142857142855
}
},
"tissue_metrics": {
"average_dice": 0.8000001185282958,
"tissue_tumor": 0.9999980926477292,
"tissue_stroma": 1.0,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_039.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5595999009042486
},
"micro": {
"recall": 0.626641651031895,
"f1_score": 0.6479146459747818,
"precision": 0.6706827309236948
},
"nuclei_other": {
"FN": 152,
"FP": 6,
"TP": 11,
"recall": 0.06748466257668712,
"f1_score": 0.12222222222222223,
"precision": 0.6470588235294118
},
"nuclei_tumor": {
"FN": 28,
"FP": 130,
"TP": 197,
"recall": 0.8755555555555555,
"f1_score": 0.7137681159420289,
"precision": 0.6024464831804281
},
"nuclei_lymphocyte": {
"FN": 19,
"FP": 28,
"TP": 126,
"recall": 0.8689655172413793,
"f1_score": 0.8428093645484949,
"precision": 0.8181818181818182
}
},
"tissue_metrics": {
"average_dice": 0.5101778945855643,
"tissue_tumor": 0.5022591931146921,
"tissue_stroma": 0.04862777981937938,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_040.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6785209959123003
},
"micro": {
"recall": 0.8418891170431212,
"f1_score": 0.8506224066390042,
"precision": 0.859538784067086
},
"nuclei_other": {
"FN": 37,
"FP": 8,
"TP": 12,
"recall": 0.24489795918367346,
"f1_score": 0.34782608695652173,
"precision": 0.6
},
"nuclei_tumor": {
"FN": 32,
"FP": 42,
"TP": 353,
"recall": 0.9168831168831169,
"f1_score": 0.9051282051282051,
"precision": 0.8936708860759494
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 17,
"TP": 45,
"recall": 0.8490566037735849,
"f1_score": 0.782608695652174,
"precision": 0.7258064516129032
}
},
"tissue_metrics": {
"average_dice": 0.6812679646254616,
"tissue_tumor": 0.9826426760763274,
"tissue_stroma": 0.6084523929023233,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.8152422541549068
}
},
{
"filename": "final_test_set_metastatic_roi_041.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7321504490043815
},
"micro": {
"recall": 0.7978142076502732,
"f1_score": 0.7967257844474761,
"precision": 0.7956403269754768
},
"nuclei_other": {
"FN": 5,
"FP": 41,
"TP": 47,
"recall": 0.9038461538461539,
"f1_score": 0.6714285714285714,
"precision": 0.5340909090909091
},
"nuclei_tumor": {
"FN": 36,
"FP": 13,
"TP": 198,
"recall": 0.8461538461538461,
"f1_score": 0.8898876404494382,
"precision": 0.9383886255924171
},
"nuclei_lymphocyte": {
"FN": 33,
"FP": 21,
"TP": 47,
"recall": 0.5875,
"f1_score": 0.6351351351351351,
"precision": 0.6911764705882353
}
},
"tissue_metrics": {
"average_dice": 0.7270737026176949,
"tissue_tumor": 0.87891282141731,
"tissue_stroma": 0.8873462967638212,
"tissue_necrosis": 0.8691092224935804,
"tissue_epidermis": 1.7241376337693735e-07,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_042.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.48607308259962334
},
"micro": {
"recall": 0.489247311827957,
"f1_score": 0.5260115606936415,
"precision": 0.56875
},
"nuclei_other": {
"FN": 186,
"FP": 5,
"TP": 27,
"recall": 0.1267605633802817,
"f1_score": 0.2204081632653061,
"precision": 0.84375
},
"nuclei_tumor": {
"FN": 19,
"FP": 183,
"TP": 95,
"recall": 0.8333333333333334,
"f1_score": 0.4846938775510204,
"precision": 0.34172661870503596
},
"nuclei_lymphocyte": {
"FN": 80,
"FP": 19,
"TP": 151,
"recall": 0.6536796536796536,
"f1_score": 0.7531172069825436,
"precision": 0.888235294117647
}
},
"tissue_metrics": {
"average_dice": 0.2978344640968616,
"tissue_tumor": 0.4330250870541641,
"tissue_stroma": 0.036402261053911714,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.019742472382482043
}
},
{
"filename": "final_test_set_metastatic_roi_043.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6464806927337146
},
"micro": {
"recall": 0.8477508650519031,
"f1_score": 0.8333333333333333,
"precision": 0.8193979933110368
},
"nuclei_other": {
"FN": 11,
"FP": 21,
"TP": 14,
"recall": 0.56,
"f1_score": 0.4666666666666667,
"precision": 0.4
},
"nuclei_tumor": {
"FN": 33,
"FP": 26,
"TP": 226,
"recall": 0.8725868725868726,
"f1_score": 0.8845401174168299,
"precision": 0.8968253968253969
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 7,
"TP": 5,
"recall": 1.0,
"f1_score": 0.5882352941176471,
"precision": 0.4166666666666667
}
},
"tissue_metrics": {
"average_dice": 0.6125923079539142,
"tissue_tumor": 0.9547101422046383,
"tissue_stroma": 0.10824889757118274,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_044.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6073334719622929
},
"micro": {
"recall": 0.8877952755905512,
"f1_score": 0.906532663316583,
"precision": 0.9260780287474333
},
"nuclei_other": {
"FN": 14,
"FP": 8,
"TP": 3,
"recall": 0.17647058823529413,
"f1_score": 0.21428571428571427,
"precision": 0.2727272727272727
},
"nuclei_tumor": {
"FN": 33,
"FP": 21,
"TP": 431,
"recall": 0.9288793103448276,
"f1_score": 0.9410480349344978,
"precision": 0.9535398230088495
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 7,
"TP": 17,
"recall": 0.6296296296296297,
"f1_score": 0.6666666666666667,
"precision": 0.7083333333333334
}
},
"tissue_metrics": {
"average_dice": 0.39204449728437035,
"tissue_tumor": 0.9602091530750212,
"tissue_stroma": 1.2460748640225696e-10,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 9.99990000099999e-06,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_045.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6530425029042984
},
"micro": {
"recall": 0.7993311036789298,
"f1_score": 0.8087986463620983,
"precision": 0.8184931506849316
},
"nuclei_other": {
"FN": 4,
"FP": 8,
"TP": 4,
"recall": 0.5,
"f1_score": 0.4,
"precision": 0.3333333333333333
},
"nuclei_tumor": {
"FN": 25,
"FP": 95,
"TP": 364,
"recall": 0.9357326478149101,
"f1_score": 0.858490566037736,
"precision": 0.7930283224400871
},
"nuclei_lymphocyte": {
"FN": 91,
"FP": 3,
"TP": 110,
"recall": 0.5472636815920398,
"f1_score": 0.7006369426751592,
"precision": 0.9734513274336283
}
},
"tissue_metrics": {
"average_dice": 0.5753256569001172,
"tissue_tumor": 0.9912276477693067,
"tissue_stroma": 0.37411605214170685,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5112820845958227
}
},
{
"filename": "final_test_set_metastatic_roi_046.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2654426470215944
},
"micro": {
"recall": 0.03389830508474576,
"f1_score": 0.03902439024390244,
"precision": 0.04597701149425287
},
"nuclei_other": {
"FN": 223,
"FP": 0,
"TP": 4,
"recall": 0.01762114537444934,
"f1_score": 0.03463203463203464,
"precision": 1.0
},
"nuclei_tumor": {
"FN": 4,
"FP": 165,
"TP": 1,
"recall": 0.2,
"f1_score": 0.011695906432748539,
"precision": 0.006024096385542169
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 1,
"TP": 3,
"recall": 0.75,
"f1_score": 0.75,
"precision": 0.75
}
},
"tissue_metrics": {
"average_dice": 0.2134917696531761,
"tissue_tumor": 9.806950185500358e-12,
"tissue_stroma": 0.06745543386498055,
"tissue_necrosis": 3.414268155221854e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.2293771973606039e-10
}
},
{
"filename": "final_test_set_metastatic_roi_047.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.19859024949083504
},
"micro": {
"recall": 0.35384615384615387,
"f1_score": 0.3670212765957447,
"precision": 0.3812154696132597
},
"nuclei_other": {
"FN": 238,
"FP": 0,
"TP": 9,
"recall": 0.03643724696356275,
"f1_score": 0.0703125,
"precision": 1.0
},
"nuclei_tumor": {
"FN": 14,
"FP": 219,
"TP": 129,
"recall": 0.9020979020979021,
"f1_score": 0.5254582484725051,
"precision": 0.3706896551724138
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 5,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.48203821548187104,
"tissue_tumor": 0.410182777525338,
"tissue_stroma": 5.882349480970894e-07,
"tissue_necrosis": 7.71164906904213e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_001.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2559983133038161
},
"micro": {
"recall": 0.28324697754749567,
"f1_score": 0.2887323943661972,
"precision": 0.29443447037701975
},
"nuclei_other": {
"FN": 195,
"FP": 4,
"TP": 28,
"recall": 0.12556053811659193,
"f1_score": 0.21960784313725493,
"precision": 0.875
},
"nuclei_tumor": {
"FN": 0,
"FP": 385,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 220,
"FP": 4,
"TP": 136,
"recall": 0.38202247191011235,
"f1_score": 0.5483870967741935,
"precision": 0.9714285714285714
}
},
"tissue_metrics": {
"average_dice": 0.2791092156140039,
"tissue_tumor": 9.768868569546834e-12,
"tissue_stroma": 0.016966547847777378,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.37857703021872324
}
},
{
"filename": "final_test_set_primary_roi_002.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.758586984480837
},
"micro": {
"recall": 0.7854406130268199,
"f1_score": 0.7824427480916031,
"precision": 0.779467680608365
},
"nuclei_other": {
"FN": 41,
"FP": 20,
"TP": 133,
"recall": 0.764367816091954,
"f1_score": 0.8134556574923547,
"precision": 0.869281045751634
},
"nuclei_tumor": {
"FN": 5,
"FP": 19,
"TP": 33,
"recall": 0.868421052631579,
"f1_score": 0.7333333333333333,
"precision": 0.6346153846153846
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 19,
"TP": 39,
"recall": 0.7959183673469388,
"f1_score": 0.7289719626168225,
"precision": 0.6724137931034483
}
},
"tissue_metrics": {
"average_dice": 0.575790583090328,
"tissue_tumor": 0.897052687313093,
"tissue_stroma": 0.981890227312706,
"tissue_necrosis": 9.99990000099999e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 9.258401991243032e-10
}
},
{
"filename": "final_test_set_primary_roi_003.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7401902537983589
},
"micro": {
"recall": 0.7682926829268293,
"f1_score": 0.7724137931034484,
"precision": 0.7765793528505393
},
"nuclei_other": {
"FN": 78,
"FP": 75,
"TP": 176,
"recall": 0.6929133858267716,
"f1_score": 0.6970297029702971,
"precision": 0.701195219123506
},
"nuclei_tumor": {
"FN": 21,
"FP": 49,
"TP": 64,
"recall": 0.7529411764705882,
"f1_score": 0.6464646464646465,
"precision": 0.5663716814159292
},
"nuclei_lymphocyte": {
"FN": 53,
"FP": 21,
"TP": 264,
"recall": 0.832807570977918,
"f1_score": 0.877076411960133,
"precision": 0.9263157894736842
}
},
"tissue_metrics": {
"average_dice": 0.6193527883161415,
"tissue_tumor": 0.7814439345355392,
"tissue_stroma": 0.9338278977261607,
"tissue_necrosis": 7.142856632653099e-08,
"tissue_epidermis": 0.6858063534347653,
"tissue_blood_vessel": 0.6956856844556758
}
},
{
"filename": "final_test_set_primary_roi_004.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4968449478156091
},
"micro": {
"recall": 0.5221445221445221,
"f1_score": 0.5358851674641149,
"precision": 0.5503685503685504
},
"nuclei_other": {
"FN": 24,
"FP": 101,
"TP": 22,
"recall": 0.4782608695652174,
"f1_score": 0.2603550295857988,
"precision": 0.17886178861788618
},
"nuclei_tumor": {
"FN": 173,
"FP": 12,
"TP": 86,
"recall": 0.33204633204633205,
"f1_score": 0.48179271708683474,
"precision": 0.8775510204081632
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 70,
"TP": 116,
"recall": 0.9354838709677419,
"f1_score": 0.7483870967741936,
"precision": 0.6236559139784946
}
},
"tissue_metrics": {
"average_dice": 0.4171964503275071,
"tissue_tumor": 0.6443964396963172,
"tissue_stroma": 1.9385292378296513e-11,
"tissue_necrosis": 4.9999750001249995e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.4415808119468327
}
},
{
"filename": "final_test_set_primary_roi_005.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8499013806706115
},
"micro": {
"recall": 0.9002169197396963,
"f1_score": 0.9110867178924259,
"precision": 0.9222222222222223
},
"nuclei_other": {
"FN": 7,
"FP": 23,
"TP": 60,
"recall": 0.8955223880597015,
"f1_score": 0.7999999999999999,
"precision": 0.7228915662650602
},
"nuclei_tumor": {
"FN": 30,
"FP": 4,
"TP": 321,
"recall": 0.9145299145299145,
"f1_score": 0.9497041420118343,
"precision": 0.9876923076923076
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 8,
"TP": 34,
"recall": 0.7906976744186046,
"f1_score": 0.8,
"precision": 0.8095238095238095
}
},
"tissue_metrics": {
"average_dice": 0.7311451338023643,
"tissue_tumor": 0.9825123568103334,
"tissue_stroma": 0.9550534643313623,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7181565145479036
}
},
{
"filename": "final_test_set_primary_roi_006.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6334019218742365
},
"micro": {
"recall": 0.7214217098943324,
"f1_score": 0.7517517517517517,
"precision": 0.7847439916405433
},
"nuclei_other": {
"FN": 57,
"FP": 84,
"TP": 51,
"recall": 0.4722222222222222,
"f1_score": 0.4197530864197531,
"precision": 0.37777777777777777
},
"nuclei_tumor": {
"FN": 31,
"FP": 88,
"TP": 109,
"recall": 0.7785714285714286,
"f1_score": 0.6468842729970327,
"precision": 0.5532994923857868
},
"nuclei_lymphocyte": {
"FN": 202,
"FP": 34,
"TP": 591,
"recall": 0.7452711223203027,
"f1_score": 0.8335684062059238,
"precision": 0.9456
}
},
"tissue_metrics": {
"average_dice": 0.6854595527453823,
"tissue_tumor": 0.9242029790472264,
"tissue_stroma": 0.9716608276873439,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5314314569985916
}
},
{
"filename": "final_test_set_primary_roi_007.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5375149478242262
},
"micro": {
"recall": 0.6681286549707602,
"f1_score": 0.7163009404388715,
"precision": 0.7719594594594594
},
"nuclei_other": {
"FN": 16,
"FP": 99,
"TP": 170,
"recall": 0.9139784946236559,
"f1_score": 0.7472527472527472,
"precision": 0.6319702602230484
},
"nuclei_tumor": {
"FN": 200,
"FP": 8,
"TP": 284,
"recall": 0.5867768595041323,
"f1_score": 0.731958762886598,
"precision": 0.9726027397260274
},
"nuclei_lymphocyte": {
"FN": 11,
"FP": 28,
"TP": 3,
"recall": 0.21428571428571427,
"f1_score": 0.13333333333333333,
"precision": 0.0967741935483871
}
},
"tissue_metrics": {
"average_dice": 0.5267113410373863,
"tissue_tumor": 0.9024935529286405,
"tissue_stroma": 0.7390231623334687,
"tissue_necrosis": 2.4875621271750717e-08,
"tissue_epidermis": 0.9157181388585414,
"tissue_blood_vessel": 0.07632182619065987
}
},
{
"filename": "final_test_set_primary_roi_008.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8356048097834531
},
"micro": {
"recall": 0.8555555555555555,
"f1_score": 0.858736059479554,
"precision": 0.8619402985074627
},
"nuclei_other": {
"FN": 13,
"FP": 26,
"TP": 67,
"recall": 0.8375,
"f1_score": 0.7745664739884393,
"precision": 0.7204301075268817
},
"nuclei_tumor": {
"FN": 15,
"FP": 2,
"TP": 125,
"recall": 0.8928571428571429,
"f1_score": 0.9363295880149813,
"precision": 0.984251968503937
},
"nuclei_lymphocyte": {
"FN": 11,
"FP": 9,
"TP": 39,
"recall": 0.78,
"f1_score": 0.7959183673469388,
"precision": 0.8125
}
},
"tissue_metrics": {
"average_dice": 0.6703539706614852,
"tissue_tumor": 0.9825992591736413,
"tissue_stroma": 0.9476367033215369,
"tissue_necrosis": 4.9999750001249995e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.4215288908372472
}
},
{
"filename": "final_test_set_primary_roi_009.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7821585025886101
},
"micro": {
"recall": 0.743202416918429,
"f1_score": 0.7797147385103012,
"precision": 0.82
},
"nuclei_other": {
"FN": 57,
"FP": 20,
"TP": 132,
"recall": 0.6984126984126984,
"f1_score": 0.7741935483870968,
"precision": 0.868421052631579
},
"nuclei_tumor": {
"FN": 13,
"FP": 16,
"TP": 53,
"recall": 0.803030303030303,
"f1_score": 0.785185185185185,
"precision": 0.7681159420289855
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 18,
"TP": 61,
"recall": 0.8026315789473685,
"f1_score": 0.7870967741935484,
"precision": 0.7721518987341772
}
},
"tissue_metrics": {
"average_dice": 0.682998001121043,
"tissue_tumor": 0.8530820207182029,
"tissue_stroma": 0.8453192240418136,
"tissue_necrosis": 7.751937383570747e-08,
"tissue_epidermis": 0.7165886833258249,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_010.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5675860087624794
},
"micro": {
"recall": 0.7937956204379562,
"f1_score": 0.8293612964728312,
"precision": 0.8682634730538922
},
"nuclei_other": {
"FN": 24,
"FP": 4,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_tumor": {
"FN": 64,
"FP": 46,
"TP": 319,
"recall": 0.8328981723237598,
"f1_score": 0.8529411764705883,
"precision": 0.873972602739726
},
"nuclei_lymphocyte": {
"FN": 25,
"FP": 16,
"TP": 116,
"recall": 0.8226950354609929,
"f1_score": 0.8498168498168498,
"precision": 0.8787878787878788
}
},
"tissue_metrics": {
"average_dice": 0.3951138642870467,
"tissue_tumor": 0.9755693189374265,
"tissue_stroma": 7.631840030808334e-10,
"tissue_necrosis": 1.398601396645313e-09,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.360215052634337e-10
}
},
{
"filename": "final_test_set_primary_roi_011.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6208684637612318
},
"micro": {
"recall": 0.84375,
"f1_score": 0.8862837045720985,
"precision": 0.9333333333333333
},
"nuclei_other": {
"FN": 0,
"FP": 15,
"TP": 3,
"recall": 1.0,
"f1_score": 0.2857142857142857,
"precision": 0.16666666666666666
},
"nuclei_tumor": {
"FN": 66,
"FP": 6,
"TP": 365,
"recall": 0.8468677494199536,
"f1_score": 0.9102244389027432,
"precision": 0.9838274932614556
},
"nuclei_lymphocyte": {
"FN": 4,
"FP": 6,
"TP": 10,
"recall": 0.7142857142857143,
"f1_score": 0.6666666666666666,
"precision": 0.625
}
},
"tissue_metrics": {
"average_dice": 0.48894279639510635,
"tissue_tumor": 0.9426046402879584,
"tissue_stroma": 0.5021068354749182,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 6.2189054339620314e-09
}
},
{
"filename": "final_test_set_primary_roi_012.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7682896914312493
},
"micro": {
"recall": 0.7609195402298851,
"f1_score": 0.7565714285714287,
"precision": 0.7522727272727273
},
"nuclei_other": {
"FN": 47,
"FP": 75,
"TP": 155,
"recall": 0.7673267326732673,
"f1_score": 0.7175925925925924,
"precision": 0.6739130434782609
},
"nuclei_tumor": {
"FN": 10,
"FP": 24,
"TP": 64,
"recall": 0.8648648648648649,
"f1_score": 0.7901234567901235,
"precision": 0.7272727272727273
},
"nuclei_lymphocyte": {
"FN": 47,
"FP": 10,
"TP": 112,
"recall": 0.7044025157232704,
"f1_score": 0.7971530249110319,
"precision": 0.9180327868852459
}
},
"tissue_metrics": {
"average_dice": 0.6605433817114029,
"tissue_tumor": 0.8291996388614371,
"tissue_stroma": 0.9452366509528839,
"tissue_necrosis": 4.9999750001249995e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5282756187676935
}
},
{
"filename": "final_test_set_primary_roi_013.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6503131639785305
},
"micro": {
"recall": 0.8015873015873016,
"f1_score": 0.8437761069340016,
"precision": 0.890652557319224
},
"nuclei_other": {
"FN": 35,
"FP": 6,
"TP": 9,
"recall": 0.20454545454545456,
"f1_score": 0.30508474576271183,
"precision": 0.6
},
"nuclei_tumor": {
"FN": 82,
"FP": 15,
"TP": 423,
"recall": 0.8376237623762376,
"f1_score": 0.897136797454931,
"precision": 0.9657534246575342
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 41,
"TP": 73,
"recall": 0.9012345679012346,
"f1_score": 0.7487179487179486,
"precision": 0.6403508771929824
}
},
"tissue_metrics": {
"average_dice": 0.56676148937125,
"tissue_tumor": 0.9791210218478773,
"tissue_stroma": 0.8546830905415927,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.1445576271665817e-09
}
},
{
"filename": "final_test_set_primary_roi_014.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7907363107515605
},
"micro": {
"recall": 0.7608142493638677,
"f1_score": 0.803763440860215,
"precision": 0.8518518518518519
},
"nuclei_other": {
"FN": 32,
"FP": 24,
"TP": 101,
"recall": 0.7593984962406015,
"f1_score": 0.7829457364341085,
"precision": 0.808
},
"nuclei_tumor": {
"FN": 55,
"FP": 5,
"TP": 152,
"recall": 0.7342995169082126,
"f1_score": 0.8351648351648352,
"precision": 0.9681528662420382
},
"nuclei_lymphocyte": {
"FN": 7,
"FP": 23,
"TP": 46,
"recall": 0.8679245283018868,
"f1_score": 0.7540983606557377,
"precision": 0.6666666666666666
}
},
"tissue_metrics": {
"average_dice": 0.5464872014935173,
"tissue_tumor": 0.9712979029734295,
"tissue_stroma": 0.9515348219515422,
"tissue_necrosis": 9.99990000099999e-06,
"tissue_epidermis": 2.3386342321360287e-09,
"tissue_blood_vessel": 0.8095932803039795
}
},
{
"filename": "final_test_set_primary_roi_015.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.43179459316378627
},
"micro": {
"recall": 0.8482142857142857,
"f1_score": 0.8816705336426914,
"precision": 0.9178743961352657
},
"nuclei_other": {
"FN": 15,
"FP": 7,
"TP": 2,
"recall": 0.11764705882352941,
"f1_score": 0.15384615384615383,
"precision": 0.2222222222222222
},
"nuclei_tumor": {
"FN": 40,
"FP": 26,
"TP": 376,
"recall": 0.9038461538461539,
"f1_score": 0.9193154034229828,
"precision": 0.9353233830845771
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 1,
"TP": 2,
"recall": 0.13333333333333333,
"f1_score": 0.2222222222222222,
"precision": 0.6666666666666666
}
},
"tissue_metrics": {
"average_dice": 0.48965569107937396,
"tissue_tumor": 0.9729797163240829,
"tissue_stroma": 0.4752962381747962,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 9.04240888955384e-10
}
},
{
"filename": "final_test_set_primary_roi_016.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7914887137372185
},
"micro": {
"recall": 0.8286290322580645,
"f1_score": 0.8465499485066941,
"precision": 0.8652631578947368
},
"nuclei_other": {
"FN": 34,
"FP": 23,
"TP": 58,
"recall": 0.6304347826086957,
"f1_score": 0.6705202312138728,
"precision": 0.7160493827160493
},
"nuclei_tumor": {
"FN": 47,
"FP": 25,
"TP": 311,
"recall": 0.8687150837988827,
"f1_score": 0.8962536023054755,
"precision": 0.9255952380952381
},
"nuclei_lymphocyte": {
"FN": 4,
"FP": 16,
"TP": 42,
"recall": 0.9130434782608695,
"f1_score": 0.8076923076923076,
"precision": 0.7241379310344828
}
},
"tissue_metrics": {
"average_dice": 0.620435503265727,
"tissue_tumor": 0.8677880062967299,
"tissue_stroma": 0.8889861649304707,
"tissue_necrosis": 4.9999750001249995e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.34539834512643414
}
},
{
"filename": "final_test_set_primary_roi_017.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8211380516713751
},
"micro": {
"recall": 0.8204545454545454,
"f1_score": 0.8242009132420092,
"precision": 0.8279816513761468
},
"nuclei_other": {
"FN": 20,
"FP": 57,
"TP": 192,
"recall": 0.9056603773584906,
"f1_score": 0.8329718004338394,
"precision": 0.7710843373493976
},
"nuclei_tumor": {
"FN": 44,
"FP": 5,
"TP": 106,
"recall": 0.7066666666666667,
"f1_score": 0.8122605363984675,
"precision": 0.954954954954955
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 13,
"TP": 63,
"recall": 0.8076923076923077,
"f1_score": 0.8181818181818182,
"precision": 0.8289473684210527
}
},
"tissue_metrics": {
"average_dice": 0.5949754888561457,
"tissue_tumor": 0.9162495419615798,
"tissue_stroma": 0.9621971051931884,
"tissue_necrosis": 9.090900826453795e-07,
"tissue_epidermis": 0.8454318836701081,
"tissue_blood_vessel": 0.25099800436576947
}
},
{
"filename": "final_test_set_primary_roi_018.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.623169475496301
},
"micro": {
"recall": 0.7967032967032966,
"f1_score": 0.8155230596175477,
"precision": 0.8352534562211982
},
"nuclei_other": {
"FN": 26,
"FP": 2,
"TP": 4,
"recall": 0.13333333333333333,
"f1_score": 0.2222222222222222,
"precision": 0.6666666666666666
},
"nuclei_tumor": {
"FN": 94,
"FP": 81,
"TP": 459,
"recall": 0.8300180831826401,
"f1_score": 0.8398902104300091,
"precision": 0.85
},
"nuclei_lymphocyte": {
"FN": 65,
"FP": 60,
"TP": 262,
"recall": 0.8012232415902141,
"f1_score": 0.8073959938366717,
"precision": 0.8136645962732919
}
},
"tissue_metrics": {
"average_dice": 0.5256209483399503,
"tissue_tumor": 0.9912825767535801,
"tissue_stroma": 8.169934633848093e-10,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6368196641354279
}
},
{
"filename": "final_test_set_primary_roi_019.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7917693225219361
},
"micro": {
"recall": 0.7753424657534247,
"f1_score": 0.7872044506258693,
"precision": 0.7994350282485876
},
"nuclei_other": {
"FN": 27,
"FP": 47,
"TP": 116,
"recall": 0.8111888111888111,
"f1_score": 0.7581699346405228,
"precision": 0.7116564417177914
},
"nuclei_tumor": {
"FN": 35,
"FP": 17,
"TP": 77,
"recall": 0.6875,
"f1_score": 0.7475728155339806,
"precision": 0.8191489361702128
},
"nuclei_lymphocyte": {
"FN": 20,
"FP": 7,
"TP": 90,
"recall": 0.8181818181818182,
"f1_score": 0.8695652173913045,
"precision": 0.9278350515463918
}
},
"tissue_metrics": {
"average_dice": 0.5630022027485134,
"tissue_tumor": 0.8263909226604784,
"tissue_stroma": 0.8750389292296665,
"tissue_necrosis": 2.5641019066405367e-07,
"tissue_epidermis": 0.4147578534330642,
"tissue_blood_vessel": 0.6988230520091674
}
},
{
"filename": "final_test_set_primary_roi_020.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7960096597043451
},
"micro": {
"recall": 0.8189134808853119,
"f1_score": 0.8306122448979593,
"precision": 0.8426501035196687
},
"nuclei_other": {
"FN": 28,
"FP": 37,
"TP": 69,
"recall": 0.711340206185567,
"f1_score": 0.6798029556650246,
"precision": 0.6509433962264151
},
"nuclei_tumor": {
"FN": 54,
"FP": 17,
"TP": 267,
"recall": 0.8317757009345794,
"f1_score": 0.8826446280991735,
"precision": 0.9401408450704225
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 22,
"TP": 71,
"recall": 0.8987341772151899,
"f1_score": 0.8255813953488371,
"precision": 0.7634408602150538
}
},
"tissue_metrics": {
"average_dice": 0.5570920984493627,
"tissue_tumor": 0.9304015407346062,
"tissue_stroma": 0.8550539497610083,
"tissue_necrosis": 4.9999750001249995e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.776198931125757e-09
}
},
{
"filename": "final_test_set_primary_roi_021.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8430913246197417
},
"micro": {
"recall": 0.836676217765043,
"f1_score": 0.8402877697841726,
"precision": 0.8439306358381503
},
"nuclei_other": {
"FN": 31,
"FP": 24,
"TP": 100,
"recall": 0.7633587786259542,
"f1_score": 0.784313725490196,
"precision": 0.8064516129032258
},
"nuclei_tumor": {
"FN": 17,
"FP": 14,
"TP": 108,
"recall": 0.864,
"f1_score": 0.8744939271255061,
"precision": 0.8852459016393442
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 16,
"TP": 84,
"recall": 0.9032258064516129,
"f1_score": 0.8704663212435233,
"precision": 0.84
}
},
"tissue_metrics": {
"average_dice": 0.6007684380122048,
"tissue_tumor": 0.8752794271228385,
"tissue_stroma": 0.8616711290913572,
"tissue_necrosis": 9.99990000099999e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.2668816339468274
}
},
{
"filename": "final_test_set_primary_roi_022.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7636800073858653
},
"micro": {
"recall": 0.8485804416403786,
"f1_score": 0.8459119496855347,
"precision": 0.8432601880877743
},
"nuclei_other": {
"FN": 15,
"FP": 34,
"TP": 28,
"recall": 0.6511627906976745,
"f1_score": 0.5333333333333333,
"precision": 0.45161290322580644
},
"nuclei_tumor": {
"FN": 17,
"FP": 12,
"TP": 193,
"recall": 0.919047619047619,
"f1_score": 0.9301204819277108,
"precision": 0.9414634146341463
},
"nuclei_lymphocyte": {
"FN": 16,
"FP": 4,
"TP": 48,
"recall": 0.75,
"f1_score": 0.8275862068965517,
"precision": 0.9230769230769231
}
},
"tissue_metrics": {
"average_dice": 0.7555487420510992,
"tissue_tumor": 0.9458255674069046,
"tissue_stroma": 0.8319156428548417,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_023.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.503827263460291
},
"micro": {
"recall": 0.8950437317784257,
"f1_score": 0.9096296296296296,
"precision": 0.9246987951807228
},
"nuclei_other": {
"FN": 8,
"FP": 1,
"TP": 1,
"recall": 0.1111111111111111,
"f1_score": 0.1818181818181818,
"precision": 0.5
},
"nuclei_tumor": {
"FN": 28,
"FP": 18,
"TP": 304,
"recall": 0.9156626506024096,
"f1_score": 0.9296636085626911,
"precision": 0.9440993788819876
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 6,
"TP": 2,
"recall": 1.0,
"f1_score": 0.4,
"precision": 0.25
}
},
"tissue_metrics": {
"average_dice": 0.5091424009816554,
"tissue_tumor": 0.9939518142134113,
"tissue_stroma": 0.5517568530641559,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 4.308487702246929e-09
}
},
{
"filename": "final_test_set_primary_roi_024.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8115756871854433
},
"micro": {
"recall": 0.8203309692671394,
"f1_score": 0.8311377245508981,
"precision": 0.8422330097087378
},
"nuclei_other": {
"FN": 23,
"FP": 43,
"TP": 72,
"recall": 0.7578947368421053,
"f1_score": 0.6857142857142857,
"precision": 0.6260869565217392
},
"nuclei_tumor": {
"FN": 25,
"FP": 4,
"TP": 88,
"recall": 0.7787610619469026,
"f1_score": 0.8585365853658536,
"precision": 0.9565217391304348
},
"nuclei_lymphocyte": {
"FN": 28,
"FP": 18,
"TP": 187,
"recall": 0.8697674418604651,
"f1_score": 0.8904761904761905,
"precision": 0.9121951219512195
}
},
"tissue_metrics": {
"average_dice": 0.7555785223001087,
"tissue_tumor": 0.8806891414489332,
"tissue_stroma": 0.8972018033877218,
"tissue_necrosis": 1.6666638888935187e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_025.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5922627817551073
},
"micro": {
"recall": 0.609009009009009,
"f1_score": 0.6101083032490975,
"precision": 0.6112115732368897
},
"nuclei_other": {
"FN": 132,
"FP": 53,
"TP": 126,
"recall": 0.4883720930232558,
"f1_score": 0.5766590389016018,
"precision": 0.7039106145251397
},
"nuclei_tumor": {
"FN": 25,
"FP": 127,
"TP": 59,
"recall": 0.7023809523809523,
"f1_score": 0.437037037037037,
"precision": 0.3172043010752688
},
"nuclei_lymphocyte": {
"FN": 60,
"FP": 35,
"TP": 153,
"recall": 0.7183098591549296,
"f1_score": 0.7630922693266833,
"precision": 0.8138297872340425
}
},
"tissue_metrics": {
"average_dice": 0.41661731287417114,
"tissue_tumor": 0.6067883005536232,
"tissue_stroma": 0.8002017194194947,
"tissue_necrosis": 4.9999750001249995e-06,
"tissue_epidermis": 9.99990000099999e-06,
"tissue_blood_vessel": 0.6760815445227366
}
},
{
"filename": "final_test_set_primary_roi_026.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7783485213427147
},
"micro": {
"recall": 0.8678038379530917,
"f1_score": 0.8819068255687974,
"precision": 0.8964757709251101
},
"nuclei_other": {
"FN": 20,
"FP": 25,
"TP": 71,
"recall": 0.7802197802197802,
"f1_score": 0.7593582887700535,
"precision": 0.7395833333333334
},
"nuclei_tumor": {
"FN": 32,
"FP": 19,
"TP": 324,
"recall": 0.9101123595505618,
"f1_score": 0.927038626609442,
"precision": 0.9446064139941691
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 3,
"TP": 12,
"recall": 0.5454545454545454,
"f1_score": 0.6486486486486486,
"precision": 0.8
}
},
"tissue_metrics": {
"average_dice": 0.7218343163579186,
"tissue_tumor": 0.9654144649937519,
"tissue_stroma": 0.9370182361436109,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7067363806584803
}
},
{
"filename": "final_test_set_primary_roi_027.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7962396378969677
},
"micro": {
"recall": 0.83203125,
"f1_score": 0.846077457795432,
"precision": 0.8606060606060606
},
"nuclei_other": {
"FN": 43,
"FP": 32,
"TP": 147,
"recall": 0.7736842105263158,
"f1_score": 0.7967479674796748,
"precision": 0.8212290502793296
},
"nuclei_tumor": {
"FN": 12,
"FP": 10,
"TP": 25,
"recall": 0.6756756756756757,
"f1_score": 0.6944444444444444,
"precision": 0.7142857142857143
},
"nuclei_lymphocyte": {
"FN": 31,
"FP": 27,
"TP": 254,
"recall": 0.8912280701754386,
"f1_score": 0.8975265017667844,
"precision": 0.9039145907473309
}
},
"tissue_metrics": {
"average_dice": 0.5672429792849095,
"tissue_tumor": 0.8698685297784843,
"tissue_stroma": 0.9768872420768112,
"tissue_necrosis": 8.695651417769442e-08,
"tissue_epidermis": 0.23345790325705765,
"tissue_blood_vessel": 0.7560011343556807
}
},
{
"filename": "final_test_set_primary_roi_028.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8429781579701818
},
"micro": {
"recall": 0.8590163934426229,
"f1_score": 0.8791946308724833,
"precision": 0.9003436426116839
},
"nuclei_other": {
"FN": 13,
"FP": 28,
"TP": 57,
"recall": 0.8142857142857143,
"f1_score": 0.7354838709677418,
"precision": 0.6705882352941176
},
"nuclei_tumor": {
"FN": 47,
"FP": 9,
"TP": 294,
"recall": 0.8621700879765396,
"f1_score": 0.9130434782608695,
"precision": 0.9702970297029703
},
"nuclei_lymphocyte": {
"FN": 26,
"FP": 21,
"TP": 173,
"recall": 0.8693467336683417,
"f1_score": 0.8804071246819339,
"precision": 0.8917525773195877
}
},
"tissue_metrics": {
"average_dice": 0.7147921583681954,
"tissue_tumor": 0.9738867610448638,
"tissue_stroma": 0.8954003912607361,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7046703062131552
}
},
{
"filename": "final_test_set_primary_roi_029.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.47950089126559714
},
"micro": {
"recall": 0.8957816377171216,
"f1_score": 0.9150823827629913,
"precision": 0.9352331606217616
},
"nuclei_other": {
"FN": 9,
"FP": 11,
"TP": 10,
"recall": 0.5263157894736842,
"f1_score": 0.5,
"precision": 0.47619047619047616
},
"nuclei_tumor": {
"FN": 33,
"FP": 13,
"TP": 351,
"recall": 0.9140625,
"f1_score": 0.9385026737967913,
"precision": 0.9642857142857143
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.48974697919356575,
"tissue_tumor": 0.9815071971737331,
"tissue_stroma": 0.4672226961951122,
"tissue_necrosis": 4.9999750001249995e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.6239831996221907e-09
}
},
{
"filename": "final_test_set_primary_roi_030.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7864487551502362
},
"micro": {
"recall": 0.7752525252525253,
"f1_score": 0.7871794871794872,
"precision": 0.7994791666666666
},
"nuclei_other": {
"FN": 45,
"FP": 33,
"TP": 89,
"recall": 0.664179104477612,
"f1_score": 0.6953125,
"precision": 0.7295081967213115
},
"nuclei_tumor": {
"FN": 26,
"FP": 26,
"TP": 129,
"recall": 0.832258064516129,
"f1_score": 0.8322580645161292,
"precision": 0.832258064516129
},
"nuclei_lymphocyte": {
"FN": 18,
"FP": 18,
"TP": 89,
"recall": 0.8317757009345794,
"f1_score": 0.8317757009345794,
"precision": 0.8317757009345794
}
},
"tissue_metrics": {
"average_dice": 0.6827462019231743,
"tissue_tumor": 0.9535170254424421,
"tissue_stroma": 0.9587197904651188,
"tissue_necrosis": 4.761902494332146e-07,
"tissue_epidermis": 0.8861150675569843,
"tissue_blood_vessel": 0.6153786499610769
}
},
{
"filename": "final_test_set_primary_roi_031.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8177111479124902
},
"micro": {
"recall": 0.7949886104783599,
"f1_score": 0.8116279069767443,
"precision": 0.828978622327791
},
"nuclei_other": {
"FN": 55,
"FP": 30,
"TP": 181,
"recall": 0.7669491525423728,
"f1_score": 0.8098434004474272,
"precision": 0.8578199052132701
},
"nuclei_tumor": {
"FN": 15,
"FP": 2,
"TP": 44,
"recall": 0.7457627118644068,
"f1_score": 0.8380952380952381,
"precision": 0.9565217391304348
},
"nuclei_lymphocyte": {
"FN": 20,
"FP": 40,
"TP": 124,
"recall": 0.8611111111111112,
"f1_score": 0.8051948051948052,
"precision": 0.7560975609756098
}
},
"tissue_metrics": {
"average_dice": 0.6872544156599025,
"tissue_tumor": 0.9209431053839355,
"tissue_stroma": 0.9845258844296598,
"tissue_necrosis": 9.99990000099999e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5307930885859166
}
},
{
"filename": "final_test_set_primary_roi_032.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7666087244683357
},
"micro": {
"recall": 0.865616311399444,
"f1_score": 0.8798869524258125,
"precision": 0.8946360153256705
},
"nuclei_other": {
"FN": 55,
"FP": 46,
"TP": 87,
"recall": 0.6126760563380281,
"f1_score": 0.6327272727272727,
"precision": 0.6541353383458647
},
"nuclei_tumor": {
"FN": 11,
"FP": 12,
"TP": 33,
"recall": 0.75,
"f1_score": 0.7415730337078651,
"precision": 0.7333333333333333
},
"nuclei_lymphocyte": {
"FN": 79,
"FP": 52,
"TP": 814,
"recall": 0.9115341545352743,
"f1_score": 0.9255258669698692,
"precision": 0.9399538106235565
}
},
"tissue_metrics": {
"average_dice": 0.5759368280810865,
"tissue_tumor": 0.8912398954799502,
"tissue_stroma": 0.9884392390991067,
"tissue_necrosis": 4.9999750001249995e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 5.851375038903599e-09
}
},
{
"filename": "final_test_set_primary_roi_033.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3100983020554066
},
"micro": {
"recall": 0.887468030690537,
"f1_score": 0.9216467463479415,
"precision": 0.9585635359116023
},
"nuclei_other": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_tumor": {
"FN": 44,
"FP": 8,
"TP": 347,
"recall": 0.887468030690537,
"f1_score": 0.9302949061662199,
"precision": 0.9774647887323944
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 6,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.6273848418505034,
"tissue_tumor": 0.979585338170438,
"tissue_stroma": 0.15733553775985654,
"tissue_necrosis": 3.3333222222592593e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_034.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6977639048532973
},
"micro": {
"recall": 0.762402088772846,
"f1_score": 0.7745358090185677,
"precision": 0.7870619946091644
},
"nuclei_other": {
"FN": 27,
"FP": 29,
"TP": 22,
"recall": 0.4489795918367347,
"f1_score": 0.43999999999999995,
"precision": 0.43137254901960786
},
"nuclei_tumor": {
"FN": 49,
"FP": 28,
"TP": 180,
"recall": 0.7860262008733624,
"f1_score": 0.8237986270022882,
"precision": 0.8653846153846154
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 22,
"TP": 90,
"recall": 0.8571428571428571,
"f1_score": 0.8294930875576038,
"precision": 0.8035714285714286
}
},
"tissue_metrics": {
"average_dice": 0.3569390354742248,
"tissue_tumor": 0.7508484746672657,
"tissue_stroma": 0.03384169737840331,
"tissue_necrosis": 4.9999750001249995e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 5.35045476002967e-09
}
},
{
"filename": "final_test_set_primary_roi_035.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7719128223522054
},
"micro": {
"recall": 0.7978075517661388,
"f1_score": 0.8177278401997503,
"precision": 0.8386683738796414
},
"nuclei_other": {
"FN": 107,
"FP": 37,
"TP": 132,
"recall": 0.5523012552301255,
"f1_score": 0.6470588235294118,
"precision": 0.7810650887573964
},
"nuclei_tumor": {
"FN": 1,
"FP": 27,
"TP": 50,
"recall": 0.9803921568627451,
"f1_score": 0.7812499999999999,
"precision": 0.6493506493506493
},
"nuclei_lymphocyte": {
"FN": 58,
"FP": 62,
"TP": 473,
"recall": 0.8907721280602636,
"f1_score": 0.8874296435272044,
"precision": 0.8841121495327103
}
},
"tissue_metrics": {
"average_dice": 0.5778216433567593,
"tissue_tumor": 0.7050567424118317,
"tissue_stroma": 0.9172510089478333,
"tissue_necrosis": 4.9999750001249995e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.2667954654491314
}
},
{
"filename": "final_test_set_primary_roi_036.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7187402571901437
},
"micro": {
"recall": 0.7443181818181818,
"f1_score": 0.721763085399449,
"precision": 0.7005347593582888
},
"nuclei_other": {
"FN": 46,
"FP": 45,
"TP": 71,
"recall": 0.6068376068376068,
"f1_score": 0.6094420600858369,
"precision": 0.6120689655172413
},
"nuclei_tumor": {
"FN": 8,
"FP": 56,
"TP": 87,
"recall": 0.9157894736842105,
"f1_score": 0.7310924369747899,
"precision": 0.6083916083916084
},
"nuclei_lymphocyte": {
"FN": 36,
"FP": 11,
"TP": 104,
"recall": 0.7428571428571429,
"f1_score": 0.8156862745098039,
"precision": 0.9043478260869565
}
},
"tissue_metrics": {
"average_dice": 0.33225626052850865,
"tissue_tumor": 0.7902519331661387,
"tissue_stroma": 0.8710268655681512,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 3.0627871269133625e-09,
"tissue_blood_vessel": 8.517162074340209e-10
}
},
{
"filename": "final_test_set_primary_roi_037.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.778601977386456
},
"micro": {
"recall": 0.7704081632653061,
"f1_score": 0.7753530166880616,
"precision": 0.7803617571059431
},
"nuclei_other": {
"FN": 49,
"FP": 43,
"TP": 89,
"recall": 0.644927536231884,
"f1_score": 0.6592592592592593,
"precision": 0.6742424242424242
},
"nuclei_tumor": {
"FN": 28,
"FP": 6,
"TP": 98,
"recall": 0.7777777777777778,
"f1_score": 0.8521739130434781,
"precision": 0.9423076923076923
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 36,
"TP": 115,
"recall": 0.8984375,
"f1_score": 0.8243727598566307,
"precision": 0.7615894039735099
}
},
"tissue_metrics": {
"average_dice": 0.37913671909924007,
"tissue_tumor": 0.9475127593725696,
"tissue_stroma": 0.9481656988603976,
"tissue_necrosis": 4.9999750001249995e-06,
"tissue_epidermis": 1.3698628260461884e-07,
"tissue_blood_vessel": 3.019506007905216e-10
}
},
{
"filename": "final_test_set_primary_roi_038.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8098622718633653
},
"micro": {
"recall": 0.7978723404255319,
"f1_score": 0.8012820512820513,
"precision": 0.8047210300429185
},
"nuclei_other": {
"FN": 71,
"FP": 25,
"TP": 138,
"recall": 0.6602870813397129,
"f1_score": 0.7419354838709676,
"precision": 0.8466257668711656
},
"nuclei_tumor": {
"FN": 10,
"FP": 20,
"TP": 90,
"recall": 0.9,
"f1_score": 0.8571428571428572,
"precision": 0.8181818181818182
},
"nuclei_lymphocyte": {
"FN": 14,
"FP": 46,
"TP": 147,
"recall": 0.9130434782608695,
"f1_score": 0.8305084745762711,
"precision": 0.7616580310880829
}
},
"tissue_metrics": {
"average_dice": 0.7486509256418852,
"tissue_tumor": 0.974947273051796,
"tissue_stroma": 0.9822368179283376,
"tissue_necrosis": 7.999999360000052e-08,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7860704572292982
}
},
{
"filename": "final_test_set_primary_roi_039.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7154581529581531
},
"micro": {
"recall": 0.7956403269754768,
"f1_score": 0.8044077134986226,
"precision": 0.8133704735376045
},
"nuclei_other": {
"FN": 32,
"FP": 14,
"TP": 25,
"recall": 0.43859649122807015,
"f1_score": 0.5208333333333334,
"precision": 0.6410256410256411
},
"nuclei_tumor": {
"FN": 26,
"FP": 26,
"TP": 205,
"recall": 0.8874458874458875,
"f1_score": 0.8874458874458875,
"precision": 0.8874458874458875
},
"nuclei_lymphocyte": {
"FN": 17,
"FP": 27,
"TP": 62,
"recall": 0.7848101265822784,
"f1_score": 0.738095238095238,
"precision": 0.6966292134831461
}
},
"tissue_metrics": {
"average_dice": 0.5739111391664314,
"tissue_tumor": 0.9881932513986819,
"tissue_stroma": 0.8813599435003175,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 9.394081719686161e-10
}
},
{
"filename": "final_test_set_primary_roi_040.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.622377588844293
},
"micro": {
"recall": 0.7542857142857143,
"f1_score": 0.7857142857142858,
"precision": 0.8198757763975155
},
"nuclei_other": {
"FN": 23,
"FP": 21,
"TP": 44,
"recall": 0.6567164179104478,
"f1_score": 0.6666666666666667,
"precision": 0.676923076923077
},
"nuclei_tumor": {
"FN": 35,
"FP": 34,
"TP": 212,
"recall": 0.8582995951417004,
"f1_score": 0.8600405679513183,
"precision": 0.8617886178861789
},
"nuclei_lymphocyte": {
"FN": 28,
"FP": 3,
"TP": 8,
"recall": 0.2222222222222222,
"f1_score": 0.3404255319148936,
"precision": 0.7272727272727273
}
},
"tissue_metrics": {
"average_dice": 0.4968503027288923,
"tissue_tumor": 0.9710482833229329,
"tissue_stroma": 0.9040920268392549,
"tissue_necrosis": 9.99990000099999e-06,
"tissue_epidermis": 0.6091012029990805,
"tissue_blood_vessel": 5.831923948310537e-10
}
},
{
"filename": "final_test_set_primary_roi_041.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6471162209175908
},
"micro": {
"recall": 0.6994535519125683,
"f1_score": 0.7004103967168263,
"precision": 0.7013698630136986
},
"nuclei_other": {
"FN": 71,
"FP": 7,
"TP": 34,
"recall": 0.3238095238095238,
"f1_score": 0.4657534246575342,
"precision": 0.8292682926829268
},
"nuclei_tumor": {
"FN": 12,
"FP": 98,
"TP": 185,
"recall": 0.9390862944162437,
"f1_score": 0.7708333333333334,
"precision": 0.6537102473498233
},
"nuclei_lymphocyte": {
"FN": 27,
"FP": 4,
"TP": 37,
"recall": 0.578125,
"f1_score": 0.7047619047619048,
"precision": 0.9024390243902439
}
},
"tissue_metrics": {
"average_dice": 0.5637154102746038,
"tissue_tumor": 0.8581107345018119,
"tissue_stroma": 0.5044811052183701,
"tissue_necrosis": 2.4999937500156254e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.45598271165908727
}
},
{
"filename": "final_test_set_primary_roi_042.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8024679826473213
},
"micro": {
"recall": 0.9069767441860465,
"f1_score": 0.9245689655172412,
"precision": 0.9428571428571428
},
"nuclei_other": {
"FN": 23,
"FP": 5,
"TP": 70,
"recall": 0.7526881720430108,
"f1_score": 0.8333333333333333,
"precision": 0.9333333333333333
},
"nuclei_tumor": {
"FN": 16,
"FP": 5,
"TP": 343,
"recall": 0.9554317548746518,
"f1_score": 0.9702970297029703,
"precision": 0.985632183908046
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 16,
"TP": 16,
"recall": 0.7619047619047619,
"f1_score": 0.6037735849056604,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.6543378486156644,
"tissue_tumor": 0.985622900184935,
"tissue_stroma": 0.8764964115141486,
"tissue_necrosis": 1.0,
"tissue_epidermis": 9.99990000099999e-06,
"tissue_blood_vessel": 0.4095599314792373
}
},
{
"filename": "final_test_set_primary_roi_043.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7298237315268284
},
"micro": {
"recall": 0.7327935222672065,
"f1_score": 0.7479338842975207,
"precision": 0.7637130801687764
},
"nuclei_other": {
"FN": 102,
"FP": 34,
"TP": 108,
"recall": 0.5142857142857142,
"f1_score": 0.6136363636363636,
"precision": 0.7605633802816901
},
"nuclei_tumor": {
"FN": 83,
"FP": 13,
"TP": 165,
"recall": 0.6653225806451613,
"f1_score": 0.7746478873239437,
"precision": 0.9269662921348315
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 121,
"TP": 270,
"recall": 0.9540636042402827,
"f1_score": 0.8011869436201781,
"precision": 0.690537084398977
}
},
"tissue_metrics": {
"average_dice": 0.5675815413010076,
"tissue_tumor": 0.928113774650611,
"tissue_stroma": 0.90978393106798,
"tissue_necrosis": 9.99990000099999e-06,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 8.86446236249937e-10
}
},
{
"filename": "final_test_set_primary_roi_044.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.685934576211115
},
"micro": {
"recall": 0.7760314341846758,
"f1_score": 0.7860696517412934,
"precision": 0.7963709677419355
},
"nuclei_other": {
"FN": 53,
"FP": 39,
"TP": 72,
"recall": 0.576,
"f1_score": 0.6101694915254237,
"precision": 0.6486486486486487
},
"nuclei_tumor": {
"FN": 55,
"FP": 36,
"TP": 301,
"recall": 0.8455056179775281,
"f1_score": 0.8686868686868687,
"precision": 0.8931750741839762
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 26,
"TP": 22,
"recall": 0.7857142857142857,
"f1_score": 0.5789473684210527,
"precision": 0.4583333333333333
}
},
"tissue_metrics": {
"average_dice": 0.4398118012505593,
"tissue_tumor": 0.8978022863138843,
"tissue_stroma": 0.30125671976209506,
"tissue_necrosis": 6.493422162926884e-11,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.1188310451986674e-10
}
},
{
"filename": "final_test_set_primary_roi_045.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7755954947390715
},
"micro": {
"recall": 0.8592057761732852,
"f1_score": 0.8686131386861314,
"precision": 0.8782287822878229
},
"nuclei_other": {
"FN": 17,
"FP": 21,
"TP": 55,
"recall": 0.7638888888888888,
"f1_score": 0.7432432432432431,
"precision": 0.7236842105263158
},
"nuclei_tumor": {
"FN": 21,
"FP": 12,
"TP": 182,
"recall": 0.896551724137931,
"f1_score": 0.9168765743073047,
"precision": 0.9381443298969072
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 0,
"TP": 1,
"recall": 0.5,
"f1_score": 0.6666666666666666,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.593692571861847,
"tissue_tumor": 0.9808624060590337,
"tissue_stroma": 0.3477524956556062,
"tissue_necrosis": 2.1739125708885717e-07,
"tissue_epidermis": 0.639847740203338,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_046.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8039695499852207
},
"micro": {
"recall": 0.8703170028818443,
"f1_score": 0.8856304985337243,
"precision": 0.9014925373134328
},
"nuclei_other": {
"FN": 30,
"FP": 22,
"TP": 231,
"recall": 0.8850574712643678,
"f1_score": 0.8988326848249028,
"precision": 0.9130434782608695
},
"nuclei_tumor": {
"FN": 8,
"FP": 10,
"TP": 64,
"recall": 0.8888888888888888,
"f1_score": 0.8767123287671232,
"precision": 0.8648648648648649
},
"nuclei_lymphocyte": {
"FN": 7,
"FP": 1,
"TP": 7,
"recall": 0.5,
"f1_score": 0.6363636363636364,
"precision": 0.875
}
},
"tissue_metrics": {
"average_dice": 0.6703455007731142,
"tissue_tumor": 0.8503132307568667,
"tissue_stroma": 0.9372542880231293,
"tissue_necrosis": 9.082652051928684e-09,
"tissue_epidermis": 0.955297562704372,
"tissue_blood_vessel": 0.6088624132985506
}
},
{
"filename": "final_test_set_primary_roi_047.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5988145075597547
},
"micro": {
"recall": 0.8666666666666667,
"f1_score": 0.8946236559139785,
"precision": 0.9244444444444444
},
"nuclei_other": {
"FN": 14,
"FP": 12,
"TP": 86,
"recall": 0.86,
"f1_score": 0.8686868686868686,
"precision": 0.8775510204081632
},
"nuclei_tumor": {
"FN": 14,
"FP": 5,
"TP": 122,
"recall": 0.8970588235294118,
"f1_score": 0.9277566539923955,
"precision": 0.9606299212598425
},
"nuclei_lymphocyte": {
"FN": 4,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.6501547267509088,
"tissue_tumor": 0.9090149242820522,
"tissue_stroma": 0.5108857814999426,
"tissue_necrosis": 9.523808616780132e-08,
"tissue_epidermis": 0.9712223591488526,
"tissue_blood_vessel": 0.8596504735856105
}
}
],
"aggregates": {
"f1_nuclei": {
"nuclei_other": 0.48181697761560516,
"nuclei_tumor": 0.8209537055123175,
"nuclei_lymphocyte": 0.6728586942192405
},
"dice_tissue": {
"average_dice": 0.5703860507310319,
"tissue_tumor": 0.8931718204425524,
"tissue_stroma": 0.5935920014079382,
"tissue_necrosis": 0.02674649177256583,
"tissue_epidermis": 0.8217038178899333,
"tissue_blood_vessel": 0.5167161221421709
},
"macro_f1_nuclei": 0.6585431257823877,
"micro_dice_tissue": {
"tissue_tumor": 0.9176507740831698,
"tissue_stroma": 0.8148856736847393,
"tissue_necrosis": 0.15185642309189318,
"tissue_epidermis": 0.8063476217897259,
"average_micro_dice": 0.6325800441092834,
"tissue_blood_vessel": 0.4721597278968891
}
}
}