Evaluation
- ID
- 4e935b50-77a3-414c-80f6-a91bccd10e14
- Submission ID
- e0c5196a-e1d0-45da-9af7-7e6bf90db3cb
- Method ID
- dc854b14-ba0a-43df-af86-bc99177f9066
- Status
-
Succeeded
- User
-
NiTo
- Challenge
-
PUMA
- Phase
-
Track 2: Preliminary test phase
- Algorithm
-
Track2Puma
(Image Version fe610f90-0fd8-472c-8f25-ab1e9763787b
)
- Submission created
- July 24, 2025, 12:05 p.m.
- Result created
- July 24, 2025, 12:05 p.m.
- Position on leaderboard
-
3
- Comment:
- inst4
Metrics
{
"results": [
{
"filename": "preliminary_test_set_metastatic_roi_001.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5669749914354231
},
"micro": {
"recall": 0.7859531772575251,
"f1_score": 0.7859531772575251,
"precision": 0.7859531772575251
},
"nuclei_tumor": {
"FN": 24,
"FP": 43,
"TP": 175,
"recall": 0.8793969849246231,
"f1_score": 0.8393285371702637,
"precision": 0.8027522935779816
},
"nuclei_stroma": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 2,
"FP": 3,
"TP": 8,
"recall": 0.8,
"f1_score": 0.761904761904762,
"precision": 0.7272727272727273
},
"nuclei_melanophage": {
"FN": 38,
"FP": 14,
"TP": 52,
"recall": 0.5777777777777777,
"f1_score": 0.6666666666666666,
"precision": 0.7878787878787878
}
},
"tissue_metrics": {
"average_dice": 0.799982270837019,
"tissue_tumor": 0.9999113004216572,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 5.376343796970764e-08
}
},
{
"filename": "preliminary_test_set_metastatic_roi_002.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2561263309581662
},
"micro": {
"recall": 0.8666666666666667,
"f1_score": 0.853125,
"precision": 0.84
},
"nuclei_tumor": {
"FN": 32,
"FP": 30,
"TP": 183,
"recall": 0.8511627906976744,
"f1_score": 0.8551401869158879,
"precision": 0.8591549295774648
},
"nuclei_stroma": {
"FN": 10,
"FP": 2,
"TP": 1,
"recall": 0.09090909090909091,
"f1_score": 0.14285714285714288,
"precision": 0.3333333333333333
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 13,
"FP": 25,
"TP": 3,
"recall": 0.1875,
"f1_score": 0.13636363636363635,
"precision": 0.10714285714285714
},
"nuclei_lymphocyte": {
"FN": 28,
"FP": 39,
"TP": 359,
"recall": 0.9276485788113695,
"f1_score": 0.9146496815286624,
"precision": 0.9020100502512562
},
"nuclei_neutrophil": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_endothelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.9724720861984195,
"tissue_tumor": 0.9586970769256642,
"tissue_stroma": 0.9036633540664333,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "preliminary_test_set_metastatic_roi_003.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3092166578808645
},
"micro": {
"recall": 0.856655290102389,
"f1_score": 0.8530161427357689,
"precision": 0.8494077834179357
},
"nuclei_tumor": {
"FN": 35,
"FP": 73,
"TP": 488,
"recall": 0.9330783938814532,
"f1_score": 0.900369003690037,
"precision": 0.8698752228163993
},
"nuclei_stroma": {
"FN": 32,
"FP": 0,
"TP": 9,
"recall": 0.21951219512195122,
"f1_score": 0.36,
"precision": 1.0
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 7,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 17,
"FP": 8,
"TP": 5,
"recall": 0.22727272727272727,
"f1_score": 0.2857142857142857,
"precision": 0.38461538461538464
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.9761196157163002,
"tissue_tumor": 0.9977205963491735,
"tissue_stroma": 1.0,
"tissue_necrosis": 0.8828774822323273,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "preliminary_test_set_metastatic_roi_004.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5142477396999268
},
"micro": {
"recall": 0.7301927194860813,
"f1_score": 0.6902834008097165,
"precision": 0.654510556621881
},
"nuclei_tumor": {
"FN": 8,
"FP": 37,
"TP": 109,
"recall": 0.9316239316239316,
"f1_score": 0.8288973384030418,
"precision": 0.7465753424657534
},
"nuclei_stroma": {
"FN": 11,
"FP": 12,
"TP": 15,
"recall": 0.5769230769230769,
"f1_score": 0.5660377358490566,
"precision": 0.5555555555555556
},
"nuclei_apoptosis": {
"FN": 4,
"FP": 4,
"TP": 2,
"recall": 0.3333333333333333,
"f1_score": 0.3333333333333333,
"precision": 0.3333333333333333
},
"nuclei_histiocyte": {
"FN": 7,
"FP": 32,
"TP": 11,
"recall": 0.6111111111111112,
"f1_score": 0.36065573770491804,
"precision": 0.2558139534883721
},
"nuclei_lymphocyte": {
"FN": 26,
"FP": 91,
"TP": 193,
"recall": 0.8812785388127854,
"f1_score": 0.7673956262425448,
"precision": 0.6795774647887324
},
"nuclei_plasma_cell": {
"FN": 70,
"FP": 4,
"TP": 11,
"recall": 0.13580246913580246,
"f1_score": 0.22916666666666663,
"precision": 0.7333333333333333
}
},
"tissue_metrics": {
"average_dice": 0.981327016323803,
"tissue_tumor": 0.9535394723233533,
"tissue_stroma": 0.9530956092956618,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "preliminary_test_set_metastatic_roi_005.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4008393524021356
},
"micro": {
"recall": 0.6871345029239766,
"f1_score": 0.6942392909896603,
"precision": 0.7014925373134329
},
"nuclei_tumor": {
"FN": 9,
"FP": 18,
"TP": 78,
"recall": 0.896551724137931,
"f1_score": 0.8524590163934426,
"precision": 0.8125
},
"nuclei_stroma": {
"FN": 2,
"FP": 22,
"TP": 6,
"recall": 0.75,
"f1_score": 0.3333333333333333,
"precision": 0.21428571428571427
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 55,
"FP": 22,
"TP": 61,
"recall": 0.5258620689655172,
"f1_score": 0.6130653266331659,
"precision": 0.7349397590361446
},
"nuclei_lymphocyte": {
"FN": 34,
"FP": 18,
"TP": 86,
"recall": 0.7166666666666667,
"f1_score": 0.7678571428571429,
"precision": 0.8269230769230769
},
"nuclei_neutrophil": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 3,
"FP": 16,
"TP": 3,
"recall": 0.5,
"f1_score": 0.23999999999999996,
"precision": 0.15789473684210525
},
"nuclei_plasma_cell": {
"FN": 2,
"FP": 1,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.4,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.767699070102453,
"tissue_tumor": 0.9466477018238847,
"tissue_stroma": 0.8918476483957772,
"tissue_necrosis": 2.926029961690651e-10,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "preliminary_test_set_primary_roi_001.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.24833067875520703
},
"micro": {
"recall": 0.6541666666666667,
"f1_score": 0.646755921730175,
"precision": 0.639511201629328
},
"nuclei_tumor": {
"FN": 139,
"FP": 36,
"TP": 182,
"recall": 0.5669781931464174,
"f1_score": 0.6753246753246752,
"precision": 0.8348623853211009
},
"nuclei_stroma": {
"FN": 0,
"FP": 6,
"TP": 3,
"recall": 1.0,
"f1_score": 0.5,
"precision": 0.3333333333333333
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 95,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 26,
"FP": 34,
"TP": 129,
"recall": 0.832258064516129,
"f1_score": 0.8113207547169811,
"precision": 0.7914110429447853
},
"nuclei_neutrophil": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_endothelium": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.6676654997216753,
"tissue_tumor": 0.7360175513388931,
"tissue_stroma": 2.2990989830556613e-11,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6023099472464921
}
},
{
"filename": "preliminary_test_set_primary_roi_002.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3403992231511994
},
"micro": {
"recall": 0.7810810810810811,
"f1_score": 0.7912388774811773,
"precision": 0.8016643550624133
},
"nuclei_tumor": {
"FN": 38,
"FP": 19,
"TP": 205,
"recall": 0.8436213991769548,
"f1_score": 0.8779443254817987,
"precision": 0.9151785714285714
},
"nuclei_stroma": {
"FN": 4,
"FP": 27,
"TP": 8,
"recall": 0.6666666666666666,
"f1_score": 0.3404255319148936,
"precision": 0.22857142857142856
},
"nuclei_apoptosis": {
"FN": 4,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_histiocyte": {
"FN": 22,
"FP": 73,
"TP": 21,
"recall": 0.4883720930232558,
"f1_score": 0.30656934306569344,
"precision": 0.22340425531914893
},
"nuclei_lymphocyte": {
"FN": 92,
"FP": 22,
"TP": 344,
"recall": 0.7889908256880734,
"f1_score": 0.85785536159601,
"precision": 0.9398907103825137
},
"nuclei_endothelium": {
"FN": 2,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.824338290627284,
"tissue_tumor": 0.9089307477895772,
"tissue_stroma": 0.8982255789986863,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.314535126348157
}
},
{
"filename": "preliminary_test_set_primary_roi_003.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5184278227848074
},
"micro": {
"recall": 0.7111553784860558,
"f1_score": 0.711864406779661,
"precision": 0.7125748502994012
},
"nuclei_tumor": {
"FN": 14,
"FP": 58,
"TP": 135,
"recall": 0.9060402684563759,
"f1_score": 0.7894736842105263,
"precision": 0.6994818652849741
},
"nuclei_stroma": {
"FN": 8,
"FP": 17,
"TP": 6,
"recall": 0.42857142857142855,
"f1_score": 0.3243243243243243,
"precision": 0.2608695652173913
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_histiocyte": {
"FN": 65,
"FP": 34,
"TP": 56,
"recall": 0.4628099173553719,
"f1_score": 0.5308056872037915,
"precision": 0.6222222222222222
},
"nuclei_lymphocyte": {
"FN": 51,
"FP": 30,
"TP": 153,
"recall": 0.75,
"f1_score": 0.7906976744186046,
"precision": 0.8360655737704918
},
"nuclei_endothelium": {
"FN": 2,
"FP": 0,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.5,
"precision": 1.0
},
"nuclei_melanophage": {
"FN": 2,
"FP": 3,
"TP": 3,
"recall": 0.6,
"f1_score": 0.5454545454545454,
"precision": 0.5
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 2,
"TP": 3,
"recall": 0.75,
"f1_score": 0.6666666666666665,
"precision": 0.6
}
},
"tissue_metrics": {
"average_dice": 0.9122821080316781,
"tissue_tumor": 0.8316522339493213,
"tissue_stroma": 0.8692728479327577,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.8604854582763115
}
},
{
"filename": "preliminary_test_set_primary_roi_004.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4378837581689119
},
"micro": {
"recall": 0.6486486486486487,
"f1_score": 0.6591760299625469,
"precision": 0.6700507614213198
},
"nuclei_tumor": {
"FN": 74,
"FP": 12,
"TP": 44,
"recall": 0.3728813559322034,
"f1_score": 0.5057471264367817,
"precision": 0.7857142857142857
},
"nuclei_stroma": {
"FN": 9,
"FP": 18,
"TP": 10,
"recall": 0.5263157894736842,
"f1_score": 0.425531914893617,
"precision": 0.35714285714285715
},
"nuclei_epithelium": {
"FN": 6,
"FP": 8,
"TP": 36,
"recall": 0.8571428571428571,
"f1_score": 0.8372093023255814,
"precision": 0.8181818181818182
},
"nuclei_histiocyte": {
"FN": 23,
"FP": 74,
"TP": 36,
"recall": 0.6101694915254238,
"f1_score": 0.42603550295857984,
"precision": 0.32727272727272727
},
"nuclei_lymphocyte": {
"FN": 25,
"FP": 16,
"TP": 138,
"recall": 0.8466257668711656,
"f1_score": 0.8706624605678233,
"precision": 0.8961038961038961
},
"nuclei_endothelium": {
"FN": 2,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_melanophage": {
"FN": 4,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8258983229885428,
"tissue_tumor": 0.4513730019300116,
"tissue_stroma": 0.7758866083784739,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.9022320046342288,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "preliminary_test_set_primary_roi_005.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5096308052398973
},
"micro": {
"recall": 0.7813211845102506,
"f1_score": 0.7733934611048479,
"precision": 0.765625
},
"nuclei_tumor": {
"FN": 50,
"FP": 27,
"TP": 224,
"recall": 0.8175182481751825,
"f1_score": 0.8533333333333333,
"precision": 0.8924302788844621
},
"nuclei_stroma": {
"FN": 2,
"FP": 6,
"TP": 3,
"recall": 0.6,
"f1_score": 0.42857142857142855,
"precision": 0.3333333333333333
},
"nuclei_apoptosis": {
"FN": 4,
"FP": 1,
"TP": 2,
"recall": 0.3333333333333333,
"f1_score": 0.4444444444444444,
"precision": 0.6666666666666666
},
"nuclei_epithelium": {
"FN": 0,
"FP": 8,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 22,
"FP": 31,
"TP": 29,
"recall": 0.5686274509803921,
"f1_score": 0.5225225225225224,
"precision": 0.48333333333333334
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 26,
"TP": 62,
"recall": 0.8857142857142857,
"f1_score": 0.7848101265822784,
"precision": 0.7045454545454546
},
"nuclei_neutrophil": {
"FN": 2,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_endothelium": {
"FN": 2,
"FP": 3,
"TP": 13,
"recall": 0.8666666666666667,
"f1_score": 0.8387096774193549,
"precision": 0.8125
},
"nuclei_melanophage": {
"FN": 6,
"FP": 2,
"TP": 10,
"recall": 0.625,
"f1_score": 0.7142857142857143,
"precision": 0.8333333333333334
}
},
"tissue_metrics": {
"average_dice": 0.7053347170695032,
"tissue_tumor": 0.9362070673773885,
"tissue_stroma": 0.8991480789202434,
"tissue_necrosis": 1.0,
"tissue_epidermis": 2.4999937500156254e-06,
"tissue_blood_vessel": 0.6913159390561348
}
}
],
"aggregates": {
"f1_nuclei": {
"nuclei_tumor": 0.7978017227359789,
"nuclei_stroma": 0.3421081411743796,
"nuclei_apoptosis": 0.07777777777777777,
"nuclei_epithelium": 0.08372093023255814,
"nuclei_histiocyte": 0.28960177564523076,
"nuclei_lymphocyte": 0.7612867876129095,
"nuclei_neutrophil": 0.0,
"nuclei_endothelium": 0.1338709677419355,
"nuclei_melanophage": 0.21664069264069266,
"nuclei_plasma_cell": 0.12958333333333333
},
"dice_tissue": {
"average_dice": 0.8433118997616678,
"tissue_tumor": 0.8720696750228925,
"tissue_stroma": 0.8191139726011025,
"tissue_necrosis": 0.8882877482524931,
"tissue_epidermis": 0.8902234504627978,
"tissue_blood_vessel": 0.7468646524690533
},
"macro_f1_nuclei": 0.2832392128894796,
"micro_dice_tissue": {
"tissue_tumor": 0.9062061140915044,
"tissue_stroma": 0.8269053019151782,
"tissue_necrosis": 0.4762905769392286,
"tissue_epidermis": 0.902219858923112,
"average_micro_dice": 0.7552524887768866,
"tissue_blood_vessel": 0.6646405920154098
}
}
}
