Evaluation

ID
6d1e7641-829b-447b-8e05-166eff584f55
Submission ID
69d8a556-949f-494f-90ed-18a54682e808
Method ID
dc854b14-ba0a-43df-af86-bc99177f9066
Status
Succeeded
User
User Mugshot NiTo 
Challenge
PUMA
Phase
Track 2: Preliminary test phase
Algorithm
Track2Puma (Image Version fe97a9f6-27b4-4ad1-a5c7-e49764e74dbc )
Submission created
Feb. 14, 2025, 3:02 p.m.
Result created
Feb. 14, 2025, 3:02 p.m.
Position on leaderboard
60
Comment:

Metrics

{
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}