Evaluation
- ID
- add10978-3d20-46b5-bfec-c334ed4d907c
- Submission ID
- 1216d834-9a66-458d-8944-70630aa29e27
- Method ID
- dc854b14-ba0a-43df-af86-bc99177f9066
- Status
-
Succeeded
- User
-
wildsquirrel
- Challenge
-
PUMA
- Phase
-
Track 2: Preliminary test phase
- Algorithm
-
TIAKong_PUMA_Track_2
(Image Version 957e2b39-f4b1-4487-ad09-d6c8ff612ad2
)
- Submission created
- March 14, 2025, 1:39 p.m.
- Result created
- March 14, 2025, 1:39 p.m.
- Position on leaderboard
-
19
- Comment:
- Track_2_Algo_V1.8
Metrics
{
"results": [
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}
}