Evaluation
- ID
- b0d44aa2-5fe4-47d6-b368-251959e457ec
- Submission ID
- 7dcf9df5-69ce-49de-869c-4bcc1788f01c
- Method ID
- 30dff492-a32f-405c-8aed-d904786e0edc
- Status
-
Succeeded
- User
-
Biototem
- Challenge
-
PUMA
- Phase
-
Track 2: Final test phase
- Algorithm
-
Bio-Totem-PUMA_2025_track2
(Image Version 5231988e-12c1-4bba-916d-828ddedf88cd
)
- Submission created
- March 15, 2025, 5:13 p.m.
- Result created
- March 15, 2025, 5:13 p.m.
- Position on leaderboard
-
4
- Comment:
Metrics
{
"results": [
{
"filename": "final_test_set_metastatic_roi_001.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4764239577216676
},
"micro": {
"recall": 0.8612099644128114,
"f1_score": 0.7960526315789473,
"precision": 0.7400611620795107
},
"nuclei_tumor": {
"FN": 28,
"FP": 64,
"TP": 216,
"recall": 0.8852459016393442,
"f1_score": 0.8244274809160306,
"precision": 0.7714285714285715
},
"nuclei_stroma": {
"FN": 1,
"FP": 8,
"TP": 2,
"recall": 0.6666666666666666,
"f1_score": 0.30769230769230765,
"precision": 0.2
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 7,
"FP": 7,
"TP": 21,
"recall": 0.75,
"f1_score": 0.75,
"precision": 0.75
},
"nuclei_endothelium": {
"FN": 2,
"FP": 4,
"TP": 3,
"recall": 0.6,
"f1_score": 0.5,
"precision": 0.42857142857142855
}
},
"tissue_metrics": {
"average_dice": 0.7536303297361241,
"tissue_tumor": 0.994447249849389,
"tissue_stroma": 9.0009000089928e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7737043898303312
}
},
{
"filename": "final_test_set_metastatic_roi_002.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3066448361229744
},
"micro": {
"recall": 0.8882978723404256,
"f1_score": 0.8487928843710293,
"precision": 0.8126520681265207
},
"nuclei_tumor": {
"FN": 66,
"FP": 110,
"TP": 621,
"recall": 0.9039301310043668,
"f1_score": 0.8758815232722145,
"precision": 0.8495212038303693
},
"nuclei_stroma": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 5,
"FP": 5,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 12,
"FP": 37,
"TP": 47,
"recall": 0.7966101694915254,
"f1_score": 0.6573426573426574,
"precision": 0.5595238095238095
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.7998249441301856,
"tissue_tumor": 0.9991247151983654,
"tissue_stroma": 5.452562674740662e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_003.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.25588032485442846
},
"micro": {
"recall": 0.7949640287769785,
"f1_score": 0.7823008849557522,
"precision": 0.7700348432055749
},
"nuclei_tumor": {
"FN": 29,
"FP": 45,
"TP": 214,
"recall": 0.8806584362139918,
"f1_score": 0.8525896414342631,
"precision": 0.8262548262548263
},
"nuclei_apoptosis": {
"FN": 5,
"FP": 6,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 9,
"TP": 3,
"recall": 0.75,
"f1_score": 0.375,
"precision": 0.25
},
"nuclei_neutrophil": {
"FN": 5,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_endothelium": {
"FN": 5,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_melanophage": {
"FN": 12,
"FP": 6,
"TP": 4,
"recall": 0.25,
"f1_score": 0.3076923076923077,
"precision": 0.4
}
},
"tissue_metrics": {
"average_dice": 0.5993555721996872,
"tissue_tumor": 0.9967778559358427,
"tissue_stroma": 3.3366699922033035e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.725923366023605e-09
}
},
{
"filename": "final_test_set_metastatic_roi_004.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2885053018743022
},
"micro": {
"recall": 0.736986301369863,
"f1_score": 0.7487821851078635,
"precision": 0.7609618104667609
},
"nuclei_tumor": {
"FN": 91,
"FP": 90,
"TP": 485,
"recall": 0.8420138888888888,
"f1_score": 0.842745438748914,
"precision": 0.8434782608695652
},
"nuclei_stroma": {
"FN": 18,
"FP": 13,
"TP": 1,
"recall": 0.05263157894736842,
"f1_score": 0.06060606060606061,
"precision": 0.07142857142857142
},
"nuclei_apoptosis": {
"FN": 40,
"FP": 33,
"TP": 31,
"recall": 0.43661971830985913,
"f1_score": 0.4592592592592592,
"precision": 0.484375
},
"nuclei_lymphocyte": {
"FN": 41,
"FP": 31,
"TP": 21,
"recall": 0.3387096774193548,
"f1_score": 0.3684210526315789,
"precision": 0.40384615384615385
},
"nuclei_neutrophil": {
"FN": 1,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.7986312313103108,
"tissue_tumor": 0.949913803657224,
"tissue_stroma": 0.04324235289432986,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_005.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2992791859706291
},
"micro": {
"recall": 0.7609046849757674,
"f1_score": 0.7566265060240964,
"precision": 0.7523961661341853
},
"nuclei_tumor": {
"FN": 23,
"FP": 80,
"TP": 161,
"recall": 0.875,
"f1_score": 0.7576470588235293,
"precision": 0.6680497925311203
},
"nuclei_stroma": {
"FN": 1,
"FP": 4,
"TP": 1,
"recall": 0.5,
"f1_score": 0.28571428571428575,
"precision": 0.2
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 96,
"FP": 9,
"TP": 49,
"recall": 0.33793103448275863,
"f1_score": 0.48275862068965514,
"precision": 0.8448275862068966
},
"nuclei_lymphocyte": {
"FN": 22,
"FP": 57,
"TP": 260,
"recall": 0.9219858156028369,
"f1_score": 0.8681135225375626,
"precision": 0.8201892744479495
},
"nuclei_neutrophil": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_endothelium": {
"FN": 1,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 3,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.751738104193071,
"tissue_tumor": 0.8790255426365623,
"tissue_stroma": 0.8796649717194074,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 6.6093852834806e-09
}
},
{
"filename": "final_test_set_metastatic_roi_006.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4933271440176396
},
"micro": {
"recall": 0.8702290076335878,
"f1_score": 0.8728943338437979,
"precision": 0.8755760368663594
},
"nuclei_tumor": {
"FN": 57,
"FP": 72,
"TP": 551,
"recall": 0.90625,
"f1_score": 0.8952071486596263,
"precision": 0.884430176565008
},
"nuclei_stroma": {
"FN": 0,
"FP": 0,
"TP": 1,
"recall": 1.0,
"f1_score": 1.0,
"precision": 1.0
},
"nuclei_apoptosis": {
"FN": 5,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 5,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 23,
"FP": 4,
"TP": 18,
"recall": 0.43902439024390244,
"f1_score": 0.5714285714285715,
"precision": 0.8181818181818182
}
},
"tissue_metrics": {
"average_dice": 1.0,
"tissue_tumor": 1.0,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_007.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.261392811296534
},
"micro": {
"recall": 0.9172932330827067,
"f1_score": 0.9070631970260222,
"precision": 0.8970588235294118
},
"nuclei_tumor": {
"FN": 14,
"FP": 39,
"TP": 363,
"recall": 0.9628647214854111,
"f1_score": 0.9319640564826701,
"precision": 0.9029850746268657
},
"nuclei_stroma": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 3,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 0,
"TP": 3,
"recall": 0.23076923076923078,
"f1_score": 0.375,
"precision": 1.0
},
"nuclei_plasma_cell": {
"FN": 6,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.7999900049659109,
"tissue_tumor": 0.9999499295914687,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 9.523808616780132e-08
}
},
{
"filename": "final_test_set_metastatic_roi_008.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.35586873126004415
},
"micro": {
"recall": 0.8732943469785575,
"f1_score": 0.8509021842355176,
"precision": 0.8296296296296296
},
"nuclei_tumor": {
"FN": 25,
"FP": 66,
"TP": 358,
"recall": 0.9347258485639687,
"f1_score": 0.8872366790582404,
"precision": 0.8443396226415094
},
"nuclei_stroma": {
"FN": 13,
"FP": 3,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 17,
"FP": 19,
"TP": 86,
"recall": 0.8349514563106796,
"f1_score": 0.826923076923077,
"precision": 0.819047619047619
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 2,
"TP": 4,
"recall": 0.3076923076923077,
"f1_score": 0.42105263157894735,
"precision": 0.6666666666666666
},
"nuclei_melanophage": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.897921695398981,
"tissue_tumor": 0.9425059698277968,
"tissue_stroma": 0.6839233576786531,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.8631791494884554,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_009.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3172538161767657
},
"micro": {
"recall": 0.7201946472019465,
"f1_score": 0.6704416761041903,
"precision": 0.6271186440677966
},
"nuclei_tumor": {
"FN": 15,
"FP": 158,
"TP": 233,
"recall": 0.9395161290322581,
"f1_score": 0.7292644757433491,
"precision": 0.5959079283887468
},
"nuclei_stroma": {
"FN": 0,
"FP": 3,
"TP": 1,
"recall": 1.0,
"f1_score": 0.4,
"precision": 0.25
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 6,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 3,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_lymphocyte": {
"FN": 93,
"FP": 6,
"TP": 61,
"recall": 0.3961038961038961,
"f1_score": 0.5520361990950227,
"precision": 0.9104477611940298
},
"nuclei_endothelium": {
"FN": 4,
"FP": 3,
"TP": 1,
"recall": 0.2,
"f1_score": 0.22222222222222224,
"precision": 0.25
}
},
"tissue_metrics": {
"average_dice": 0.6115879040677269,
"tissue_tumor": 0.9488890383900542,
"tissue_stroma": 0.10905048103467037,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 9.139097048858439e-10
}
},
{
"filename": "final_test_set_metastatic_roi_010.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.16994258696386355
},
"micro": {
"recall": 0.8064516129032258,
"f1_score": 0.7216494845360825,
"precision": 0.6529850746268657
},
"nuclei_tumor": {
"FN": 31,
"FP": 58,
"TP": 167,
"recall": 0.8434343434343434,
"f1_score": 0.7895981087470448,
"precision": 0.7422222222222222
},
"nuclei_stroma": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 6,
"FP": 9,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 19,
"TP": 8,
"recall": 0.6153846153846154,
"f1_score": 0.4,
"precision": 0.2962962962962963
},
"nuclei_melanophage": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7657114251238479,
"tissue_tumor": 0.976271848342222,
"tissue_stroma": 1.8224895173637883e-09,
"tissue_necrosis": 0.852285275454528,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_011.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5141968661235446
},
"micro": {
"recall": 0.7962962962962963,
"f1_score": 0.7593818984547462,
"precision": 0.7257383966244726
},
"nuclei_tumor": {
"FN": 9,
"FP": 59,
"TP": 147,
"recall": 0.9423076923076923,
"f1_score": 0.8121546961325966,
"precision": 0.7135922330097088
},
"nuclei_stroma": {
"FN": 7,
"FP": 3,
"TP": 1,
"recall": 0.125,
"f1_score": 0.16666666666666666,
"precision": 0.25
},
"nuclei_lymphocyte": {
"FN": 17,
"FP": 2,
"TP": 20,
"recall": 0.5405405405405406,
"f1_score": 0.6779661016949153,
"precision": 0.9090909090909091
},
"nuclei_melanophage": {
"FN": 11,
"FP": 1,
"TP": 4,
"recall": 0.26666666666666666,
"f1_score": 0.4,
"precision": 0.8
}
},
"tissue_metrics": {
"average_dice": 0.8206774710709157,
"tissue_tumor": 0.7182433311032288,
"tissue_stroma": 0.38514402425134947,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_012.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.33161340575133674
},
"micro": {
"recall": 0.6036585365853658,
"f1_score": 0.6193952033368092,
"precision": 0.6359743040685225
},
"nuclei_tumor": {
"FN": 27,
"FP": 126,
"TP": 151,
"recall": 0.848314606741573,
"f1_score": 0.6637362637362637,
"precision": 0.5451263537906137
},
"nuclei_stroma": {
"FN": 8,
"FP": 3,
"TP": 5,
"recall": 0.38461538461538464,
"f1_score": 0.4761904761904762,
"precision": 0.625
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 13,
"FP": 33,
"TP": 6,
"recall": 0.3157894736842105,
"f1_score": 0.20689655172413793,
"precision": 0.15384615384615385
},
"nuclei_lymphocyte": {
"FN": 147,
"FP": 3,
"TP": 135,
"recall": 0.4787234042553192,
"f1_score": 0.6428571428571429,
"precision": 0.9782608695652174
},
"nuclei_endothelium": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.78527794045682,
"tissue_tumor": 0.9655526411127449,
"tissue_stroma": 0.960837057298388,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.8729666774865735e-09
}
},
{
"filename": "final_test_set_metastatic_roi_013.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2225222624110168
},
"micro": {
"recall": 0.2476894639556377,
"f1_score": 0.24837812789620017,
"precision": 0.24907063197026022
},
"nuclei_tumor": {
"FN": 7,
"FP": 372,
"TP": 93,
"recall": 0.93,
"f1_score": 0.3292035398230089,
"precision": 0.2
},
"nuclei_stroma": {
"FN": 26,
"FP": 2,
"TP": 10,
"recall": 0.2777777777777778,
"f1_score": 0.4166666666666667,
"precision": 0.8333333333333334
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 3,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 331,
"FP": 0,
"TP": 1,
"recall": 0.0030120481927710845,
"f1_score": 0.006006006006006006,
"precision": 1.0
},
"nuclei_lymphocyte": {
"FN": 25,
"FP": 25,
"TP": 28,
"recall": 0.5283018867924528,
"f1_score": 0.5283018867924528,
"precision": 0.5283018867924528
},
"nuclei_neutrophil": {
"FN": 4,
"FP": 0,
"TP": 2,
"recall": 0.3333333333333333,
"f1_score": 0.5,
"precision": 1.0
},
"nuclei_endothelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 14,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.5304800693758487,
"tissue_tumor": 0.4814657788366014,
"tissue_stroma": 0.17093394304303294,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 6.249996093752442e-07
}
},
{
"filename": "final_test_set_metastatic_roi_014.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5286638051066364
},
"micro": {
"recall": 0.81,
"f1_score": 0.8086522462562397,
"precision": 0.8073089700996677
},
"nuclei_tumor": {
"FN": 24,
"FP": 28,
"TP": 145,
"recall": 0.8579881656804734,
"f1_score": 0.847953216374269,
"precision": 0.838150289017341
},
"nuclei_stroma": {
"FN": 12,
"FP": 0,
"TP": 4,
"recall": 0.25,
"f1_score": 0.4,
"precision": 1.0
},
"nuclei_apoptosis": {
"FN": 3,
"FP": 4,
"TP": 1,
"recall": 0.25,
"f1_score": 0.22222222222222224,
"precision": 0.2
},
"nuclei_histiocyte": {
"FN": 6,
"FP": 13,
"TP": 4,
"recall": 0.4,
"f1_score": 0.29629629629629634,
"precision": 0.23529411764705882
},
"nuclei_lymphocyte": {
"FN": 12,
"FP": 13,
"TP": 89,
"recall": 0.8811881188118812,
"f1_score": 0.8768472906403942,
"precision": 0.8725490196078431
}
},
"tissue_metrics": {
"average_dice": 0.9631919539632484,
"tissue_tumor": 0.9729710394014327,
"tissue_stroma": 0.8429887304148095,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_015.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.24443018586745044
},
"micro": {
"recall": 0.8297872340425532,
"f1_score": 0.8210526315789474,
"precision": 0.8125
},
"nuclei_tumor": {
"FN": 30,
"FP": 35,
"TP": 214,
"recall": 0.8770491803278688,
"f1_score": 0.8681541582150102,
"precision": 0.8594377510040161
},
"nuclei_stroma": {
"FN": 8,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_apoptosis": {
"FN": 3,
"FP": 3,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 11,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 12,
"FP": 10,
"TP": 59,
"recall": 0.8309859154929577,
"f1_score": 0.8428571428571429,
"precision": 0.855072463768116
},
"nuclei_endothelium": {
"FN": 0,
"FP": 3,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 3,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.756497173091874,
"tissue_tumor": 0.9734943484850983,
"tissue_stroma": 0.8089915123723392,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 4.601932790603163e-09
}
},
{
"filename": "final_test_set_metastatic_roi_016.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.34051730094197835
},
"micro": {
"recall": 0.8316430020283976,
"f1_score": 0.7670720299345183,
"precision": 0.7118055555555556
},
"nuclei_tumor": {
"FN": 34,
"FP": 129,
"TP": 385,
"recall": 0.918854415274463,
"f1_score": 0.8252947481243301,
"precision": 0.7490272373540856
},
"nuclei_stroma": {
"FN": 16,
"FP": 10,
"TP": 7,
"recall": 0.30434782608695654,
"f1_score": 0.35,
"precision": 0.4117647058823529
},
"nuclei_apoptosis": {
"FN": 21,
"FP": 7,
"TP": 5,
"recall": 0.19230769230769232,
"f1_score": 0.2631578947368421,
"precision": 0.4166666666666667
},
"nuclei_epithelium": {
"FN": 1,
"FP": 11,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 9,
"TP": 13,
"recall": 0.6190476190476191,
"f1_score": 0.6046511627906977,
"precision": 0.5909090909090909
},
"nuclei_plasma_cell": {
"FN": 3,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.8820849078584242,
"tissue_tumor": 0.919801620635782,
"tissue_stroma": 0.4906229186563387,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_017.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3133933507067836
},
"micro": {
"recall": 0.6207792207792208,
"f1_score": 0.5800970873786407,
"precision": 0.5444191343963554
},
"nuclei_tumor": {
"FN": 128,
"FP": 59,
"TP": 208,
"recall": 0.6190476190476191,
"f1_score": 0.6898839137645107,
"precision": 0.7790262172284644
},
"nuclei_stroma": {
"FN": 0,
"FP": 47,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 2,
"TP": 2,
"recall": 0.5,
"f1_score": 0.5,
"precision": 0.5
},
"nuclei_epithelium": {
"FN": 0,
"FP": 81,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 16,
"FP": 10,
"TP": 29,
"recall": 0.6444444444444445,
"f1_score": 0.6904761904761906,
"precision": 0.7435897435897436
},
"nuclei_endothelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7499255316281856,
"tissue_tumor": 0.749627658117115,
"tissue_stroma": 2.381349272441089e-11,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_018.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4159526390120537
},
"micro": {
"recall": 0.7748538011695907,
"f1_score": 0.7697893972403776,
"precision": 0.7647907647907648
},
"nuclei_tumor": {
"FN": 56,
"FP": 86,
"TP": 327,
"recall": 0.8537859007832899,
"f1_score": 0.821608040201005,
"precision": 0.7917675544794189
},
"nuclei_stroma": {
"FN": 14,
"FP": 12,
"TP": 5,
"recall": 0.2631578947368421,
"f1_score": 0.27777777777777773,
"precision": 0.29411764705882354
},
"nuclei_apoptosis": {
"FN": 7,
"FP": 5,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 27,
"FP": 30,
"TP": 19,
"recall": 0.41304347826086957,
"f1_score": 0.4,
"precision": 0.3877551020408163
},
"nuclei_lymphocyte": {
"FN": 47,
"FP": 26,
"TP": 176,
"recall": 0.7892376681614349,
"f1_score": 0.8282352941176471,
"precision": 0.8712871287128713
},
"nuclei_endothelium": {
"FN": 1,
"FP": 3,
"TP": 1,
"recall": 0.5,
"f1_score": 0.3333333333333333,
"precision": 0.25
},
"nuclei_melanophage": {
"FN": 1,
"FP": 1,
"TP": 2,
"recall": 0.6666666666666666,
"f1_score": 0.6666666666666666,
"precision": 0.6666666666666666
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.6699690027153753,
"tissue_tumor": 0.8769489935760104,
"tissue_stroma": 0.4728960167200265,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.280839884249213e-09
}
},
{
"filename": "final_test_set_metastatic_roi_019.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.31531237931308165
},
"micro": {
"recall": 0.6776315789473685,
"f1_score": 0.652931854199683,
"precision": 0.6299694189602446
},
"nuclei_tumor": {
"FN": 11,
"FP": 87,
"TP": 169,
"recall": 0.9388888888888889,
"f1_score": 0.7752293577981652,
"precision": 0.66015625
},
"nuclei_stroma": {
"FN": 11,
"FP": 3,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 4,
"FP": 7,
"TP": 4,
"recall": 0.5,
"f1_score": 0.4210526315789474,
"precision": 0.36363636363636365
},
"nuclei_lymphocyte": {
"FN": 34,
"FP": 23,
"TP": 32,
"recall": 0.48484848484848486,
"f1_score": 0.5289256198347108,
"precision": 0.5818181818181818
},
"nuclei_neutrophil": {
"FN": 9,
"FP": 1,
"TP": 1,
"recall": 0.1,
"f1_score": 0.16666666666666669,
"precision": 0.5
},
"nuclei_plasma_cell": {
"FN": 29,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.7764834033729124,
"tissue_tumor": 0.8543287939084607,
"tissue_stroma": 0.02808822295610115,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_020.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.32113737333517556
},
"micro": {
"recall": 0.719626168224299,
"f1_score": 0.743448275862069,
"precision": 0.7689015691868759
},
"nuclei_tumor": {
"FN": 28,
"FP": 90,
"TP": 193,
"recall": 0.8733031674208145,
"f1_score": 0.7658730158730159,
"precision": 0.6819787985865724
},
"nuclei_stroma": {
"FN": 5,
"FP": 4,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 2,
"FP": 58,
"TP": 7,
"recall": 0.7777777777777778,
"f1_score": 0.18918918918918923,
"precision": 0.1076923076923077
},
"nuclei_lymphocyte": {
"FN": 170,
"FP": 5,
"TP": 335,
"recall": 0.6633663366336634,
"f1_score": 0.7928994082840237,
"precision": 0.9852941176470589
},
"nuclei_endothelium": {
"FN": 5,
"FP": 3,
"TP": 4,
"recall": 0.4444444444444444,
"f1_score": 0.5,
"precision": 0.5714285714285714
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8928253078701335,
"tissue_tumor": 0.9663193916292531,
"tissue_stroma": 0.9474100219415338,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5503971257798803
}
},
{
"filename": "final_test_set_metastatic_roi_021.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.37894256070726656
},
"micro": {
"recall": 0.7564102564102564,
"f1_score": 0.7257072570725707,
"precision": 0.6973995271867612
},
"nuclei_tumor": {
"FN": 31,
"FP": 82,
"TP": 206,
"recall": 0.869198312236287,
"f1_score": 0.7847619047619049,
"precision": 0.7152777777777778
},
"nuclei_stroma": {
"FN": 36,
"FP": 10,
"TP": 11,
"recall": 0.23404255319148937,
"f1_score": 0.3235294117647059,
"precision": 0.5238095238095238
},
"nuclei_apoptosis": {
"FN": 6,
"FP": 10,
"TP": 5,
"recall": 0.45454545454545453,
"f1_score": 0.3846153846153846,
"precision": 0.3333333333333333
},
"nuclei_histiocyte": {
"FN": 4,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 17,
"FP": 24,
"TP": 73,
"recall": 0.8111111111111111,
"f1_score": 0.7807486631016044,
"precision": 0.7525773195876289
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.9302173717715648,
"tissue_tumor": 0.9339609473507092,
"tissue_stroma": 0.7171259115071151,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_022.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.36286979908242367
},
"micro": {
"recall": 0.9042904290429042,
"f1_score": 0.8946938775510204,
"precision": 0.8852988691437803
},
"nuclei_tumor": {
"FN": 57,
"FP": 61,
"TP": 543,
"recall": 0.905,
"f1_score": 0.9019933554817277,
"precision": 0.8990066225165563
},
"nuclei_stroma": {
"FN": 0,
"FP": 3,
"TP": 2,
"recall": 1.0,
"f1_score": 0.5714285714285715,
"precision": 0.4
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 2,
"TP": 2,
"recall": 1.0,
"f1_score": 0.6666666666666666,
"precision": 0.5
},
"nuclei_melanophage": {
"FN": 0,
"FP": 3,
"TP": 1,
"recall": 1.0,
"f1_score": 0.4,
"precision": 0.25
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 1.0,
"tissue_tumor": 1.0,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_023.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.25008951431266485
},
"micro": {
"recall": 0.9032258064516129,
"f1_score": 0.883048620236531,
"precision": 0.8637532133676092
},
"nuclei_tumor": {
"FN": 43,
"FP": 85,
"TP": 660,
"recall": 0.9388335704125178,
"f1_score": 0.9116022099447514,
"precision": 0.8859060402684564
},
"nuclei_stroma": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 8,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 17,
"FP": 6,
"TP": 9,
"recall": 0.34615384615384615,
"f1_score": 0.43902439024390244,
"precision": 0.6
},
"nuclei_neutrophil": {
"FN": 3,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_endothelium": {
"FN": 5,
"FP": 4,
"TP": 3,
"recall": 0.375,
"f1_score": 0.39999999999999997,
"precision": 0.42857142857142855
},
"nuclei_plasma_cell": {
"FN": 2,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.8982515311613511,
"tissue_tumor": 0.9703568079492892,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5209008478574666
}
},
{
"filename": "final_test_set_metastatic_roi_024.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3825782551842856
},
"micro": {
"recall": 0.7570332480818415,
"f1_score": 0.74,
"precision": 0.7237163814180929
},
"nuclei_tumor": {
"FN": 22,
"FP": 87,
"TP": 150,
"recall": 0.872093023255814,
"f1_score": 0.7334963325183375,
"precision": 0.6329113924050633
},
"nuclei_stroma": {
"FN": 1,
"FP": 11,
"TP": 3,
"recall": 0.75,
"f1_score": 0.3333333333333333,
"precision": 0.21428571428571427
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_histiocyte": {
"FN": 103,
"FP": 34,
"TP": 63,
"recall": 0.3795180722891566,
"f1_score": 0.47908745247148293,
"precision": 0.6494845360824743
},
"nuclei_lymphocyte": {
"FN": 53,
"FP": 82,
"TP": 372,
"recall": 0.8752941176470588,
"f1_score": 0.8464163822525598,
"precision": 0.8193832599118943
},
"nuclei_endothelium": {
"FN": 8,
"FP": 12,
"TP": 4,
"recall": 0.3333333333333333,
"f1_score": 0.28571428571428575,
"precision": 0.25
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.8796487904337319,
"tissue_tumor": 0.9136307828169563,
"tissue_stroma": 0.924469016054857,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5601441532968457
}
},
{
"filename": "final_test_set_metastatic_roi_025.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.44962284175029893
},
"micro": {
"recall": 0.8014184397163121,
"f1_score": 0.7617977528089889,
"precision": 0.7259100642398287
},
"nuclei_tumor": {
"FN": 33,
"FP": 44,
"TP": 141,
"recall": 0.8103448275862069,
"f1_score": 0.7855153203342619,
"precision": 0.7621621621621621
},
"nuclei_stroma": {
"FN": 7,
"FP": 2,
"TP": 5,
"recall": 0.4166666666666667,
"f1_score": 0.5263157894736842,
"precision": 0.7142857142857143
},
"nuclei_apoptosis": {
"FN": 11,
"FP": 12,
"TP": 6,
"recall": 0.35294117647058826,
"f1_score": 0.34285714285714286,
"precision": 0.3333333333333333
},
"nuclei_histiocyte": {
"FN": 21,
"FP": 17,
"TP": 14,
"recall": 0.4,
"f1_score": 0.4242424242424243,
"precision": 0.45161290322580644
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 51,
"TP": 169,
"recall": 0.9548022598870056,
"f1_score": 0.8513853904282117,
"precision": 0.7681818181818182
},
"nuclei_neutrophil": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_endothelium": {
"FN": 4,
"FP": 0,
"TP": 4,
"recall": 0.5,
"f1_score": 0.6666666666666666,
"precision": 1.0
},
"nuclei_melanophage": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8387101015790366,
"tissue_tumor": 0.9249243392208437,
"tissue_stroma": 0.7735089161316959,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.49511725254264355
}
},
{
"filename": "final_test_set_metastatic_roi_026.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3373507956161167
},
"micro": {
"recall": 0.7361111111111112,
"f1_score": 0.680577849117175,
"precision": 0.6328358208955224
},
"nuclei_tumor": {
"FN": 23,
"FP": 83,
"TP": 144,
"recall": 0.8622754491017964,
"f1_score": 0.7309644670050761,
"precision": 0.6343612334801763
},
"nuclei_stroma": {
"FN": 6,
"FP": 8,
"TP": 3,
"recall": 0.3333333333333333,
"f1_score": 0.3,
"precision": 0.2727272727272727
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 6,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 21,
"FP": 16,
"TP": 59,
"recall": 0.7375,
"f1_score": 0.7612903225806452,
"precision": 0.7866666666666666
},
"nuclei_endothelium": {
"FN": 6,
"FP": 5,
"TP": 4,
"recall": 0.4,
"f1_score": 0.4210526315789474,
"precision": 0.4444444444444444
},
"nuclei_melanophage": {
"FN": 20,
"FP": 3,
"TP": 2,
"recall": 0.09090909090909091,
"f1_score": 0.14814814814814814,
"precision": 0.4
}
},
"tissue_metrics": {
"average_dice": 0.3797574478052736,
"tissue_tumor": 0.7896124482125444,
"tissue_stroma": 0.10917474135083764,
"tissue_necrosis": 4.878048542534218e-08,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 6.825006820348754e-10
}
},
{
"filename": "final_test_set_metastatic_roi_027.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4540267449319813
},
"micro": {
"recall": 0.9380804953560371,
"f1_score": 0.8833819241982508,
"precision": 0.8347107438016529
},
"nuclei_tumor": {
"FN": 15,
"FP": 44,
"TP": 262,
"recall": 0.9458483754512635,
"f1_score": 0.8987993138936535,
"precision": 0.8562091503267973
},
"nuclei_stroma": {
"FN": 0,
"FP": 3,
"TP": 1,
"recall": 1.0,
"f1_score": 0.4,
"precision": 0.25
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 1,
"TP": 2,
"recall": 0.5,
"f1_score": 0.5714285714285715,
"precision": 0.6666666666666666
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 3,
"FP": 10,
"TP": 38,
"recall": 0.926829268292683,
"f1_score": 0.8539325842696629,
"precision": 0.7916666666666666
},
"nuclei_neutrophil": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.9235532266257769,
"tissue_tumor": 0.9736110065373282,
"tissue_stroma": 0.6441551265915562,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_028.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.18571428571428572
},
"micro": {
"recall": 0.9356060606060606,
"f1_score": 0.9165120593692022,
"precision": 0.8981818181818182
},
"nuclei_tumor": {
"FN": 14,
"FP": 24,
"TP": 247,
"recall": 0.946360153256705,
"f1_score": 0.9285714285714286,
"precision": 0.9114391143911439
},
"nuclei_stroma": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 3,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7984691687197767,
"tissue_tumor": 0.9923458429711374,
"tissue_stroma": 6.277463900641894e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_029.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4170501383736678
},
"micro": {
"recall": 0.8810198300283286,
"f1_score": 0.8315508021390373,
"precision": 0.7873417721518987
},
"nuclei_tumor": {
"FN": 8,
"FP": 74,
"TP": 299,
"recall": 0.9739413680781759,
"f1_score": 0.8794117647058824,
"precision": 0.8016085790884718
},
"nuclei_stroma": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 26,
"FP": 1,
"TP": 5,
"recall": 0.16129032258064516,
"f1_score": 0.27027027027027023,
"precision": 0.8333333333333334
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 5,
"TP": 7,
"recall": 0.4666666666666667,
"f1_score": 0.5185185185185186,
"precision": 0.5833333333333334
}
},
"tissue_metrics": {
"average_dice": 0.7995949191330266,
"tissue_tumor": 0.997974593306086,
"tissue_stroma": 2.359046939469104e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_030.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.43819317470577973
},
"micro": {
"recall": 0.8473282442748091,
"f1_score": 0.8579710144927536,
"precision": 0.8688845401174168
},
"nuclei_tumor": {
"FN": 32,
"FP": 35,
"TP": 334,
"recall": 0.912568306010929,
"f1_score": 0.9088435374149659,
"precision": 0.9051490514905149
},
"nuclei_stroma": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 6,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_histiocyte": {
"FN": 7,
"FP": 15,
"TP": 14,
"recall": 0.6666666666666666,
"f1_score": 0.56,
"precision": 0.4827586206896552
},
"nuclei_lymphocyte": {
"FN": 26,
"FP": 15,
"TP": 90,
"recall": 0.7758620689655172,
"f1_score": 0.8144796380090498,
"precision": 0.8571428571428571
},
"nuclei_endothelium": {
"FN": 7,
"FP": 1,
"TP": 5,
"recall": 0.4166666666666667,
"f1_score": 0.5555555555555556,
"precision": 0.8333333333333334
},
"nuclei_melanophage": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 1,
"recall": 0.5,
"f1_score": 0.6666666666666666,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.8643232031546562,
"tissue_tumor": 0.9875664758093586,
"tissue_stroma": 0.9292035774253095,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.4048459625386131
}
},
{
"filename": "final_test_set_metastatic_roi_031.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.31414703357802637
},
"micro": {
"recall": 0.8,
"f1_score": 0.7869500741473059,
"precision": 0.77431906614786
},
"nuclei_tumor": {
"FN": 54,
"FP": 94,
"TP": 280,
"recall": 0.8383233532934131,
"f1_score": 0.7909604519774012,
"precision": 0.7486631016042781
},
"nuclei_stroma": {
"FN": 31,
"FP": 3,
"TP": 7,
"recall": 0.18421052631578946,
"f1_score": 0.29166666666666663,
"precision": 0.7
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 64,
"FP": 16,
"TP": 14,
"recall": 0.1794871794871795,
"f1_score": 0.25925925925925924,
"precision": 0.4666666666666667
},
"nuclei_lymphocyte": {
"FN": 50,
"FP": 115,
"TP": 495,
"recall": 0.908256880733945,
"f1_score": 0.8571428571428572,
"precision": 0.8114754098360656
},
"nuclei_endothelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.9608001020444611,
"tissue_tumor": 0.915178466350181,
"tissue_stroma": 0.8888220438721245,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_032.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3225776970644426
},
"micro": {
"recall": 0.8107667210440457,
"f1_score": 0.8140868140868142,
"precision": 0.8174342105263158
},
"nuclei_tumor": {
"FN": 25,
"FP": 62,
"TP": 221,
"recall": 0.8983739837398373,
"f1_score": 0.835538752362949,
"precision": 0.7809187279151943
},
"nuclei_stroma": {
"FN": 8,
"FP": 0,
"TP": 1,
"recall": 0.1111111111111111,
"f1_score": 0.19999999999999998,
"precision": 1.0
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 3,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 7,
"FP": 29,
"TP": 8,
"recall": 0.5333333333333333,
"f1_score": 0.3076923076923077,
"precision": 0.21621621621621623
},
"nuclei_lymphocyte": {
"FN": 59,
"FP": 17,
"TP": 263,
"recall": 0.8167701863354038,
"f1_score": 0.8737541528239202,
"precision": 0.9392857142857143
},
"nuclei_neutrophil": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_endothelium": {
"FN": 14,
"FP": 0,
"TP": 4,
"recall": 0.2222222222222222,
"f1_score": 0.3636363636363636,
"precision": 1.0
},
"nuclei_plasma_cell": {
"FN": 2,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.7529689598035977,
"tissue_tumor": 0.9298240931056775,
"tissue_stroma": 0.835020701079058,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 4.833252755760016e-09
}
},
{
"filename": "final_test_set_metastatic_roi_033.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3987949432088122
},
"micro": {
"recall": 0.895910780669145,
"f1_score": 0.8984156570363467,
"precision": 0.9009345794392524
},
"nuclei_tumor": {
"FN": 28,
"FP": 49,
"TP": 475,
"recall": 0.9443339960238568,
"f1_score": 0.9250243427458618,
"precision": 0.9064885496183206
},
"nuclei_stroma": {
"FN": 5,
"FP": 0,
"TP": 2,
"recall": 0.2857142857142857,
"f1_score": 0.4444444444444445,
"precision": 1.0
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 2,
"TP": 3,
"recall": 0.16666666666666666,
"f1_score": 0.2608695652173913,
"precision": 0.6
},
"nuclei_endothelium": {
"FN": 7,
"FP": 0,
"TP": 2,
"recall": 0.2222222222222222,
"f1_score": 0.3636363636363636,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.9007683783714768,
"tissue_tumor": 0.992781032391275,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5110608594661092
}
},
{
"filename": "final_test_set_metastatic_roi_034.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.37643047003772123
},
"micro": {
"recall": 0.8942857142857142,
"f1_score": 0.8634482758620691,
"precision": 0.8346666666666667
},
"nuclei_tumor": {
"FN": 61,
"FP": 88,
"TP": 614,
"recall": 0.9096296296296297,
"f1_score": 0.8917937545388526,
"precision": 0.8746438746438746
},
"nuclei_stroma": {
"FN": 1,
"FP": 3,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 6,
"FP": 5,
"TP": 4,
"recall": 0.4,
"f1_score": 0.4210526315789474,
"precision": 0.4444444444444444
},
"nuclei_lymphocyte": {
"FN": 4,
"FP": 27,
"TP": 6,
"recall": 0.6,
"f1_score": 0.27906976744186046,
"precision": 0.18181818181818182
},
"nuclei_endothelium": {
"FN": 1,
"FP": 1,
"TP": 2,
"recall": 0.6666666666666666,
"f1_score": 0.6666666666666666,
"precision": 0.6666666666666666
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.7527134230725132,
"tissue_tumor": 0.9290381980399349,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.5583120361593357e-10,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.8345289171667998
}
},
{
"filename": "final_test_set_metastatic_roi_035.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.34707071908984016
},
"micro": {
"recall": 0.6485714285714286,
"f1_score": 0.6202185792349727,
"precision": 0.5942408376963351
},
"nuclei_tumor": {
"FN": 71,
"FP": 54,
"TP": 162,
"recall": 0.6952789699570815,
"f1_score": 0.7216035634743876,
"precision": 0.75
},
"nuclei_stroma": {
"FN": 6,
"FP": 22,
"TP": 4,
"recall": 0.4,
"f1_score": 0.2222222222222222,
"precision": 0.15384615384615385
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 6,
"FP": 30,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 31,
"TP": 41,
"recall": 0.7592592592592593,
"f1_score": 0.6507936507936508,
"precision": 0.5694444444444444
},
"nuclei_melanophage": {
"FN": 25,
"FP": 17,
"TP": 20,
"recall": 0.4444444444444444,
"f1_score": 0.4878048780487805,
"precision": 0.5405405405405406
}
},
"tissue_metrics": {
"average_dice": 0.9859088062297466,
"tissue_tumor": 0.9744035253008443,
"tissue_stroma": 0.9551405058478896,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_036.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.29526425441130033
},
"micro": {
"recall": 0.7942708333333334,
"f1_score": 0.7682619647355166,
"precision": 0.7439024390243902
},
"nuclei_tumor": {
"FN": 27,
"FP": 44,
"TP": 156,
"recall": 0.8524590163934426,
"f1_score": 0.8146214099216711,
"precision": 0.78
},
"nuclei_stroma": {
"FN": 2,
"FP": 3,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 6,
"FP": 6,
"TP": 3,
"recall": 0.3333333333333333,
"f1_score": 0.3333333333333333,
"precision": 0.3333333333333333
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 5,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 19,
"FP": 44,
"TP": 138,
"recall": 0.8789808917197452,
"f1_score": 0.8141592920353982,
"precision": 0.7582417582417582
},
"nuclei_neutrophil": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_endothelium": {
"FN": 2,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 23,
"FP": 1,
"TP": 8,
"recall": 0.25806451612903225,
"f1_score": 0.39999999999999997,
"precision": 0.8888888888888888
}
},
"tissue_metrics": {
"average_dice": 0.5661346364909629,
"tissue_tumor": 0.9446500507247643,
"tissue_stroma": 0.8860231269667984,
"tissue_necrosis": 2.301601914403056e-10,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 4.533091547900764e-09
}
},
{
"filename": "final_test_set_metastatic_roi_037.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3595337284124469
},
"micro": {
"recall": 0.9448698315467075,
"f1_score": 0.9215832710978342,
"precision": 0.8994169096209913
},
"nuclei_tumor": {
"FN": 20,
"FP": 63,
"TP": 614,
"recall": 0.9684542586750788,
"f1_score": 0.936689549961861,
"precision": 0.9069423929098966
},
"nuclei_stroma": {
"FN": 4,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 1,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.4,
"precision": 0.5
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 2,
"TP": 1,
"recall": 0.1,
"f1_score": 0.15384615384615383,
"precision": 0.3333333333333333
},
"nuclei_endothelium": {
"FN": 1,
"FP": 0,
"TP": 1,
"recall": 0.5,
"f1_score": 0.6666666666666666,
"precision": 1.0
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7331504331777154,
"tissue_tumor": 0.996996238212303,
"tissue_stroma": 5.854800902489457e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6687559218214737
}
},
{
"filename": "final_test_set_metastatic_roi_038.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.47227667543230534
},
"micro": {
"recall": 0.860813704496788,
"f1_score": 0.8229273285568065,
"precision": 0.788235294117647
},
"nuclei_tumor": {
"FN": 34,
"FP": 76,
"TP": 390,
"recall": 0.9198113207547169,
"f1_score": 0.8764044943820224,
"precision": 0.8369098712446352
},
"nuclei_apoptosis": {
"FN": 19,
"FP": 12,
"TP": 8,
"recall": 0.2962962962962963,
"f1_score": 0.3404255319148936,
"precision": 0.4
},
"nuclei_lymphocyte": {
"FN": 12,
"FP": 20,
"TP": 4,
"recall": 0.25,
"f1_score": 0.2,
"precision": 0.16666666666666666
}
},
"tissue_metrics": {
"average_dice": 1.0,
"tissue_tumor": 1.0,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_039.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.25214143962110985
},
"micro": {
"recall": 0.6135084427767354,
"f1_score": 0.5950864422202002,
"precision": 0.5777385159010601
},
"nuclei_tumor": {
"FN": 33,
"FP": 144,
"TP": 192,
"recall": 0.8533333333333334,
"f1_score": 0.6844919786096257,
"precision": 0.5714285714285714
},
"nuclei_stroma": {
"FN": 27,
"FP": 14,
"TP": 11,
"recall": 0.2894736842105263,
"f1_score": 0.34920634920634924,
"precision": 0.44
},
"nuclei_apoptosis": {
"FN": 3,
"FP": 16,
"TP": 2,
"recall": 0.4,
"f1_score": 0.1739130434782609,
"precision": 0.1111111111111111
},
"nuclei_histiocyte": {
"FN": 111,
"FP": 4,
"TP": 4,
"recall": 0.034782608695652174,
"f1_score": 0.06504065040650406,
"precision": 0.5
},
"nuclei_lymphocyte": {
"FN": 22,
"FP": 59,
"TP": 118,
"recall": 0.8428571428571429,
"f1_score": 0.7444794952681388,
"precision": 0.6666666666666666
},
"nuclei_neutrophil": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_endothelium": {
"FN": 5,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_plasma_cell": {
"FN": 5,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8082810869996362,
"tissue_tumor": 0.5803465639217957,
"tissue_stroma": 0.46105887107638505,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_040.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4516252768229861
},
"micro": {
"recall": 0.7987679671457906,
"f1_score": 0.7898477157360406,
"precision": 0.7811244979919679
},
"nuclei_tumor": {
"FN": 55,
"FP": 57,
"TP": 330,
"recall": 0.8571428571428571,
"f1_score": 0.8549222797927462,
"precision": 0.8527131782945736
},
"nuclei_stroma": {
"FN": 2,
"FP": 4,
"TP": 4,
"recall": 0.6666666666666666,
"f1_score": 0.5714285714285715,
"precision": 0.5
},
"nuclei_apoptosis": {
"FN": 18,
"FP": 2,
"TP": 3,
"recall": 0.14285714285714285,
"f1_score": 0.23076923076923073,
"precision": 0.6
},
"nuclei_histiocyte": {
"FN": 8,
"FP": 13,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 4,
"FP": 31,
"TP": 49,
"recall": 0.9245283018867925,
"f1_score": 0.7368421052631579,
"precision": 0.6125
},
"nuclei_endothelium": {
"FN": 11,
"FP": 2,
"TP": 3,
"recall": 0.21428571428571427,
"f1_score": 0.3157894736842105,
"precision": 0.6
}
},
"tissue_metrics": {
"average_dice": 0.8770632123160743,
"tissue_tumor": 0.974796446585037,
"tissue_stroma": 0.4940310069830289,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.9164886080123055
}
},
{
"filename": "final_test_set_metastatic_roi_041.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.40062192180472556
},
"micro": {
"recall": 0.7404371584699454,
"f1_score": 0.7364130434782608,
"precision": 0.7324324324324324
},
"nuclei_tumor": {
"FN": 50,
"FP": 28,
"TP": 184,
"recall": 0.7863247863247863,
"f1_score": 0.8251121076233183,
"precision": 0.8679245283018868
},
"nuclei_stroma": {
"FN": 6,
"FP": 5,
"TP": 7,
"recall": 0.5384615384615384,
"f1_score": 0.5599999999999999,
"precision": 0.5833333333333334
},
"nuclei_apoptosis": {
"FN": 10,
"FP": 4,
"TP": 1,
"recall": 0.09090909090909091,
"f1_score": 0.12500000000000003,
"precision": 0.2
},
"nuclei_epithelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 24,
"FP": 1,
"TP": 4,
"recall": 0.14285714285714285,
"f1_score": 0.24242424242424243,
"precision": 0.8
},
"nuclei_lymphocyte": {
"FN": 3,
"FP": 58,
"TP": 72,
"recall": 0.96,
"f1_score": 0.7024390243902439,
"precision": 0.5538461538461539
},
"nuclei_neutrophil": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 2,
"FP": 0,
"TP": 3,
"recall": 0.6,
"f1_score": 0.7499999999999999,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.9160135286914309,
"tissue_tumor": 0.8961853027051824,
"tissue_stroma": 0.8122984328342323,
"tissue_necrosis": 0.8715839079177402,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_042.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2294826782272666
},
"micro": {
"recall": 0.5734767025089605,
"f1_score": 0.5693950177935942,
"precision": 0.5653710247349824
},
"nuclei_tumor": {
"FN": 29,
"FP": 116,
"TP": 85,
"recall": 0.7456140350877193,
"f1_score": 0.5396825396825397,
"precision": 0.4228855721393035
},
"nuclei_stroma": {
"FN": 7,
"FP": 20,
"TP": 3,
"recall": 0.3,
"f1_score": 0.18181818181818182,
"precision": 0.13043478260869565
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 3,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 5,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 121,
"FP": 9,
"TP": 19,
"recall": 0.1357142857142857,
"f1_score": 0.22619047619047616,
"precision": 0.6785714285714286
},
"nuclei_lymphocyte": {
"FN": 32,
"FP": 85,
"TP": 199,
"recall": 0.8614718614718615,
"f1_score": 0.7728155339805824,
"precision": 0.7007042253521126
},
"nuclei_neutrophil": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_endothelium": {
"FN": 29,
"FP": 0,
"TP": 1,
"recall": 0.03333333333333333,
"f1_score": 0.06451612903225806,
"precision": 1.0
},
"nuclei_melanophage": {
"FN": 18,
"FP": 7,
"TP": 13,
"recall": 0.41935483870967744,
"f1_score": 0.5098039215686274,
"precision": 0.65
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.6198702313462883,
"tissue_tumor": 0.47362307297029893,
"tissue_stroma": 0.238695934333062,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.38703214942808023
}
},
{
"filename": "final_test_set_metastatic_roi_043.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.19113308223477712
},
"micro": {
"recall": 0.6089965397923875,
"f1_score": 0.5866666666666667,
"precision": 0.5659163987138264
},
"nuclei_tumor": {
"FN": 88,
"FP": 42,
"TP": 171,
"recall": 0.6602316602316602,
"f1_score": 0.7245762711864406,
"precision": 0.8028169014084507
},
"nuclei_stroma": {
"FN": 2,
"FP": 3,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 76,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_lymphocyte": {
"FN": 4,
"FP": 4,
"TP": 1,
"recall": 0.2,
"f1_score": 0.20000000000000004,
"precision": 0.2
},
"nuclei_melanophage": {
"FN": 18,
"FP": 10,
"TP": 4,
"recall": 0.18181818181818182,
"f1_score": 0.2222222222222222,
"precision": 0.2857142857142857
}
},
"tissue_metrics": {
"average_dice": 0.7961073009207265,
"tissue_tumor": 0.9420095163510543,
"tissue_stroma": 0.03852698825257752,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_044.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.38814457253874923
},
"micro": {
"recall": 0.9015748031496063,
"f1_score": 0.8690702087286527,
"precision": 0.8388278388278388
},
"nuclei_tumor": {
"FN": 33,
"FP": 53,
"TP": 431,
"recall": 0.9288793103448276,
"f1_score": 0.9092827004219409,
"precision": 0.890495867768595
},
"nuclei_stroma": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 4,
"FP": 13,
"TP": 6,
"recall": 0.6,
"f1_score": 0.41379310344827586,
"precision": 0.3157894736842105
},
"nuclei_histiocyte": {
"FN": 7,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 20,
"TP": 21,
"recall": 0.7777777777777778,
"f1_score": 0.6176470588235294,
"precision": 0.5121951219512195
}
},
"tissue_metrics": {
"average_dice": 0.5979439781334833,
"tissue_tumor": 0.9897198904031248,
"tissue_stroma": 1.2460748640225696e-10,
"tissue_necrosis": 1.3968431343208767e-10,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_045.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.36213433295860176
},
"micro": {
"recall": 0.8494983277591973,
"f1_score": 0.8293877551020409,
"precision": 0.810207336523126
},
"nuclei_tumor": {
"FN": 49,
"FP": 55,
"TP": 340,
"recall": 0.8740359897172236,
"f1_score": 0.8673469387755103,
"precision": 0.8607594936708861
},
"nuclei_stroma": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 6,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 6,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 33,
"FP": 39,
"TP": 161,
"recall": 0.8298969072164949,
"f1_score": 0.817258883248731,
"precision": 0.805
},
"nuclei_neutrophil": {
"FN": 1,
"FP": 0,
"TP": 4,
"recall": 0.8,
"f1_score": 0.888888888888889,
"precision": 1.0
},
"nuclei_endothelium": {
"FN": 2,
"FP": 1,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.4,
"precision": 0.5
},
"nuclei_melanophage": {
"FN": 0,
"FP": 6,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 5,
"FP": 5,
"TP": 2,
"recall": 0.2857142857142857,
"f1_score": 0.2857142857142857,
"precision": 0.2857142857142857
}
},
"tissue_metrics": {
"average_dice": 0.7004201501540628,
"tissue_tumor": 0.989310824901461,
"tissue_stroma": 0.023912720035999525,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.48887720583285343
}
},
{
"filename": "final_test_set_metastatic_roi_046.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.1432996537072319
},
"micro": {
"recall": 0.0423728813559322,
"f1_score": 0.042735042735042736,
"precision": 0.04310344827586207
},
"nuclei_tumor": {
"FN": 2,
"FP": 205,
"TP": 3,
"recall": 0.6,
"f1_score": 0.028169014084507046,
"precision": 0.014423076923076924
},
"nuclei_stroma": {
"FN": 3,
"FP": 2,
"TP": 1,
"recall": 0.25,
"f1_score": 0.28571428571428575,
"precision": 0.3333333333333333
},
"nuclei_apoptosis": {
"FN": 108,
"FP": 3,
"TP": 1,
"recall": 0.009174311926605505,
"f1_score": 0.017699115044247787,
"precision": 0.25
},
"nuclei_epithelium": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 2,
"TP": 3,
"recall": 0.75,
"f1_score": 0.6666666666666665,
"precision": 0.6
},
"nuclei_endothelium": {
"FN": 17,
"FP": 6,
"TP": 2,
"recall": 0.10526315789473684,
"f1_score": 0.14814814814814814,
"precision": 0.25
},
"nuclei_melanophage": {
"FN": 95,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.5429457050371502,
"tissue_tumor": 2.7886690797172105e-11,
"tissue_stroma": 0.1900872155052096,
"tissue_necrosis": 0.9621229167607375,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5625183928919176
}
},
{
"filename": "final_test_set_metastatic_roi_047.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.10936893367768945
},
"micro": {
"recall": 0.36923076923076925,
"f1_score": 0.35380835380835385,
"precision": 0.33962264150943394
},
"nuclei_tumor": {
"FN": 14,
"FP": 224,
"TP": 129,
"recall": 0.9020979020979021,
"f1_score": 0.5201612903225807,
"precision": 0.3654390934844193
},
"nuclei_stroma": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 147,
"FP": 25,
"TP": 5,
"recall": 0.03289473684210526,
"f1_score": 0.054945054945054944,
"precision": 0.16666666666666666
},
"nuclei_epithelium": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 24,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_neutrophil": {
"FN": 85,
"FP": 0,
"TP": 10,
"recall": 0.10526315789473684,
"f1_score": 0.1904761904761905,
"precision": 1.0
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.6820355527355699,
"tissue_tumor": 0.4101777636649972,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.2852793104568363e-11,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_001.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.28675031575716364
},
"micro": {
"recall": 0.6683937823834197,
"f1_score": 0.6576040781648258,
"precision": 0.6471571906354515
},
"nuclei_tumor": {
"FN": 0,
"FP": 85,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_stroma": {
"FN": 9,
"FP": 21,
"TP": 3,
"recall": 0.25,
"f1_score": 0.16666666666666666,
"precision": 0.125
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 6,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 86,
"FP": 51,
"TP": 70,
"recall": 0.44871794871794873,
"f1_score": 0.5054151624548736,
"precision": 0.5785123966942148
},
"nuclei_lymphocyte": {
"FN": 53,
"FP": 36,
"TP": 297,
"recall": 0.8485714285714285,
"f1_score": 0.8696925329428989,
"precision": 0.8918918918918919
},
"nuclei_endothelium": {
"FN": 17,
"FP": 8,
"TP": 13,
"recall": 0.43333333333333335,
"f1_score": 0.5098039215686274,
"precision": 0.6190476190476191
},
"nuclei_melanophage": {
"FN": 21,
"FP": 4,
"TP": 4,
"recall": 0.16,
"f1_score": 0.24242424242424243,
"precision": 0.5
},
"nuclei_plasma_cell": {
"FN": 6,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.8772553637750875,
"tissue_tumor": 1.0,
"tissue_stroma": 0.981157693507363,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.40511912536807393
}
},
{
"filename": "final_test_set_primary_roi_002.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.22354093545327197
},
"micro": {
"recall": 0.32950191570881227,
"f1_score": 0.33268858800773693,
"precision": 0.3359375
},
"nuclei_tumor": {
"FN": 7,
"FP": 129,
"TP": 31,
"recall": 0.8157894736842105,
"f1_score": 0.31313131313131315,
"precision": 0.19375
},
"nuclei_stroma": {
"FN": 10,
"FP": 11,
"TP": 6,
"recall": 0.375,
"f1_score": 0.3636363636363636,
"precision": 0.35294117647058826
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 5,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 132,
"FP": 2,
"TP": 15,
"recall": 0.10204081632653061,
"f1_score": 0.1829268292682927,
"precision": 0.8823529411764706
},
"nuclei_lymphocyte": {
"FN": 18,
"FP": 14,
"TP": 30,
"recall": 0.625,
"f1_score": 0.6521739130434783,
"precision": 0.6818181818181818
},
"nuclei_endothelium": {
"FN": 0,
"FP": 7,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 7,
"FP": 1,
"TP": 4,
"recall": 0.36363636363636365,
"f1_score": 0.5000000000000001,
"precision": 0.8
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.7646870809308549,
"tissue_tumor": 0.8420603032623921,
"tissue_stroma": 0.9813750984882816,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.903600456145179e-09
}
},
{
"filename": "final_test_set_primary_roi_003.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4418612944639858
},
"micro": {
"recall": 0.6585365853658537,
"f1_score": 0.6442953020134229,
"precision": 0.6306569343065693
},
"nuclei_tumor": {
"FN": 20,
"FP": 123,
"TP": 65,
"recall": 0.7647058823529411,
"f1_score": 0.4761904761904762,
"precision": 0.34574468085106386
},
"nuclei_stroma": {
"FN": 5,
"FP": 5,
"TP": 2,
"recall": 0.2857142857142857,
"f1_score": 0.2857142857142857,
"precision": 0.2857142857142857
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 12,
"FP": 3,
"TP": 26,
"recall": 0.6842105263157895,
"f1_score": 0.7761194029850746,
"precision": 0.896551724137931
},
"nuclei_histiocyte": {
"FN": 91,
"FP": 30,
"TP": 41,
"recall": 0.3106060606060606,
"f1_score": 0.4039408866995074,
"precision": 0.5774647887323944
},
"nuclei_lymphocyte": {
"FN": 42,
"FP": 66,
"TP": 267,
"recall": 0.8640776699029126,
"f1_score": 0.8317757009345795,
"precision": 0.8018018018018018
},
"nuclei_endothelium": {
"FN": 6,
"FP": 12,
"TP": 14,
"recall": 0.7,
"f1_score": 0.608695652173913,
"precision": 0.5384615384615384
},
"nuclei_melanophage": {
"FN": 41,
"FP": 13,
"TP": 16,
"recall": 0.2807017543859649,
"f1_score": 0.37209302325581395,
"precision": 0.5517241379310345
},
"nuclei_plasma_cell": {
"FN": 7,
"FP": 0,
"TP": 1,
"recall": 0.125,
"f1_score": 0.2222222222222222,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.8546833096221251,
"tissue_tumor": 0.7737783606756709,
"tissue_stroma": 0.9385089004041891,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.9260023098574903,
"tissue_blood_vessel": 0.635126977173275
}
},
{
"filename": "final_test_set_primary_roi_004.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.37256640632840404
},
"micro": {
"recall": 0.6923076923076923,
"f1_score": 0.6939252336448598,
"precision": 0.6955503512880562
},
"nuclei_tumor": {
"FN": 96,
"FP": 25,
"TP": 163,
"recall": 0.6293436293436293,
"f1_score": 0.7293064876957494,
"precision": 0.8670212765957447
},
"nuclei_stroma": {
"FN": 1,
"FP": 17,
"TP": 1,
"recall": 0.5,
"f1_score": 0.09999999999999999,
"precision": 0.05555555555555555
},
"nuclei_apoptosis": {
"FN": 13,
"FP": 6,
"TP": 5,
"recall": 0.2777777777777778,
"f1_score": 0.3448275862068966,
"precision": 0.45454545454545453
},
"nuclei_histiocyte": {
"FN": 0,
"FP": 9,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 11,
"FP": 70,
"TP": 113,
"recall": 0.9112903225806451,
"f1_score": 0.7361563517915309,
"precision": 0.6174863387978142
},
"nuclei_neutrophil": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_endothelium": {
"FN": 11,
"FP": 2,
"TP": 15,
"recall": 0.5769230769230769,
"f1_score": 0.6976744186046512,
"precision": 0.8823529411764706
}
},
"tissue_metrics": {
"average_dice": 0.6608227547122315,
"tissue_tumor": 0.5290517466706302,
"tissue_stroma": 1.54156601522849e-11,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7750620268751114
}
},
{
"filename": "final_test_set_primary_roi_005.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.38199750058874365
},
"micro": {
"recall": 0.8221258134490239,
"f1_score": 0.8029661016949152,
"precision": 0.7846790890269151
},
"nuclei_tumor": {
"FN": 29,
"FP": 43,
"TP": 322,
"recall": 0.9173789173789174,
"f1_score": 0.899441340782123,
"precision": 0.8821917808219178
},
"nuclei_stroma": {
"FN": 18,
"FP": 19,
"TP": 6,
"recall": 0.25,
"f1_score": 0.24489795918367346,
"precision": 0.24
},
"nuclei_epithelium": {
"FN": 0,
"FP": 7,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 12,
"FP": 9,
"TP": 4,
"recall": 0.25,
"f1_score": 0.27586206896551724,
"precision": 0.3076923076923077
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 8,
"TP": 34,
"recall": 0.8095238095238095,
"f1_score": 0.8095238095238095,
"precision": 0.8095238095238095
},
"nuclei_endothelium": {
"FN": 10,
"FP": 7,
"TP": 10,
"recall": 0.5,
"f1_score": 0.5405405405405405,
"precision": 0.5882352941176471
},
"nuclei_melanophage": {
"FN": 4,
"FP": 11,
"TP": 3,
"recall": 0.42857142857142855,
"f1_score": 0.2857142857142857,
"precision": 0.21428571428571427
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.9249365563464276,
"tissue_tumor": 0.9827169387187146,
"tissue_stroma": 0.9546440093688031,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6873218336446197
}
},
{
"filename": "final_test_set_primary_roi_006.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.30716044612215054
},
"micro": {
"recall": 0.6109510086455331,
"f1_score": 0.6337817638266068,
"precision": 0.6583850931677019
},
"nuclei_tumor": {
"FN": 41,
"FP": 229,
"TP": 99,
"recall": 0.7071428571428572,
"f1_score": 0.423076923076923,
"precision": 0.3018292682926829
},
"nuclei_stroma": {
"FN": 15,
"FP": 6,
"TP": 5,
"recall": 0.25,
"f1_score": 0.3225806451612903,
"precision": 0.45454545454545453
},
"nuclei_epithelium": {
"FN": 0,
"FP": 6,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 57,
"FP": 65,
"TP": 23,
"recall": 0.2875,
"f1_score": 0.2738095238095238,
"precision": 0.26136363636363635
},
"nuclei_lymphocyte": {
"FN": 286,
"FP": 22,
"TP": 507,
"recall": 0.639344262295082,
"f1_score": 0.7670196671709532,
"precision": 0.9584120982986768
},
"nuclei_endothelium": {
"FN": 6,
"FP": 1,
"TP": 2,
"recall": 0.25,
"f1_score": 0.36363636363636365,
"precision": 0.6666666666666666
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.6366936194128957,
"tissue_tumor": 0.9015815582682519,
"tissue_stroma": 0.9782294633872322,
"tissue_necrosis": 1.0,
"tissue_epidermis": 5.466273092015813e-10,
"tissue_blood_vessel": 0.3036570748623673
}
},
{
"filename": "final_test_set_primary_roi_007.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2796200127473223
},
"micro": {
"recall": 0.3508771929824561,
"f1_score": 0.35294117647058815,
"precision": 0.35502958579881655
},
"nuclei_tumor": {
"FN": 368,
"FP": 51,
"TP": 116,
"recall": 0.2396694214876033,
"f1_score": 0.35637480798771126,
"precision": 0.6946107784431138
},
"nuclei_stroma": {
"FN": 5,
"FP": 37,
"TP": 12,
"recall": 0.7058823529411765,
"f1_score": 0.36363636363636365,
"precision": 0.24489795918367346
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 33,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 40,
"FP": 19,
"TP": 98,
"recall": 0.7101449275362319,
"f1_score": 0.7686274509803921,
"precision": 0.8376068376068376
},
"nuclei_histiocyte": {
"FN": 5,
"FP": 24,
"TP": 4,
"recall": 0.4444444444444444,
"f1_score": 0.21621621621621623,
"precision": 0.14285714285714285
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 265,
"TP": 6,
"recall": 0.42857142857142855,
"f1_score": 0.042105263157894736,
"precision": 0.02214022140221402
},
"nuclei_endothelium": {
"FN": 17,
"FP": 2,
"TP": 3,
"recall": 0.15,
"f1_score": 0.24,
"precision": 0.6
},
"nuclei_melanophage": {
"FN": 1,
"FP": 5,
"TP": 1,
"recall": 0.5,
"f1_score": 0.25,
"precision": 0.16666666666666666
}
},
"tissue_metrics": {
"average_dice": 0.6984324348535842,
"tissue_tumor": 0.8967261643704282,
"tissue_stroma": 0.7250324017507077,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.8704036079922708,
"tissue_blood_vessel": 1.545141302933429e-10
}
},
{
"filename": "final_test_set_primary_roi_008.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.40950517232695466
},
"micro": {
"recall": 0.6222222222222222,
"f1_score": 0.64,
"precision": 0.6588235294117647
},
"nuclei_tumor": {
"FN": 23,
"FP": 60,
"TP": 117,
"recall": 0.8357142857142857,
"f1_score": 0.7381703470031545,
"precision": 0.6610169491525424
},
"nuclei_stroma": {
"FN": 16,
"FP": 5,
"TP": 6,
"recall": 0.2727272727272727,
"f1_score": 0.3636363636363636,
"precision": 0.5454545454545454
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 35,
"FP": 7,
"TP": 10,
"recall": 0.2222222222222222,
"f1_score": 0.3225806451612903,
"precision": 0.5882352941176471
},
"nuclei_lymphocyte": {
"FN": 19,
"FP": 6,
"TP": 31,
"recall": 0.62,
"f1_score": 0.7126436781609196,
"precision": 0.8378378378378378
},
"nuclei_endothelium": {
"FN": 9,
"FP": 8,
"TP": 4,
"recall": 0.3076923076923077,
"f1_score": 0.32,
"precision": 0.3333333333333333
}
},
"tissue_metrics": {
"average_dice": 0.8427959105657304,
"tissue_tumor": 0.9792764369218778,
"tissue_stroma": 0.9389665824861652,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.29573653342060935
}
},
{
"filename": "final_test_set_primary_roi_009.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.351266445577173
},
"micro": {
"recall": 0.5649546827794562,
"f1_score": 0.5871271585557299,
"precision": 0.6111111111111112
},
"nuclei_tumor": {
"FN": 12,
"FP": 63,
"TP": 54,
"recall": 0.8181818181818182,
"f1_score": 0.5901639344262295,
"precision": 0.46153846153846156
},
"nuclei_stroma": {
"FN": 4,
"FP": 21,
"TP": 15,
"recall": 0.7894736842105263,
"f1_score": 0.5454545454545454,
"precision": 0.4166666666666667
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 41,
"FP": 10,
"TP": 52,
"recall": 0.5591397849462365,
"f1_score": 0.6709677419354838,
"precision": 0.8387096774193549
},
"nuclei_histiocyte": {
"FN": 56,
"FP": 2,
"TP": 4,
"recall": 0.06666666666666667,
"f1_score": 0.1212121212121212,
"precision": 0.6666666666666666
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 20,
"TP": 61,
"recall": 0.8026315789473685,
"f1_score": 0.7770700636942676,
"precision": 0.7530864197530864
},
"nuclei_endothelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 16,
"FP": 1,
"TP": 1,
"recall": 0.058823529411764705,
"f1_score": 0.10526315789473684,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.9032228776944946,
"tissue_tumor": 0.878597649873409,
"tissue_stroma": 0.8391273542686383,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.7983893843304255,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_010.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2809484152025184
},
"micro": {
"recall": 0.7992700729927007,
"f1_score": 0.7891891891891892,
"precision": 0.7793594306049823
},
"nuclei_tumor": {
"FN": 67,
"FP": 72,
"TP": 316,
"recall": 0.825065274151436,
"f1_score": 0.8197146562905318,
"precision": 0.8144329896907216
},
"nuclei_stroma": {
"FN": 1,
"FP": 3,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 1,
"FP": 19,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 17,
"FP": 22,
"TP": 121,
"recall": 0.8768115942028986,
"f1_score": 0.8612099644128114,
"precision": 0.8461538461538461
},
"nuclei_endothelium": {
"FN": 22,
"FP": 4,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 2,
"FP": 3,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.28571428571428575,
"precision": 0.25
}
},
"tissue_metrics": {
"average_dice": 0.5763177445167734,
"tissue_tumor": 0.8815887221976997,
"tissue_stroma": 5.205486582587362e-11,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.341129300587662e-10
}
},
{
"filename": "final_test_set_primary_roi_011.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3968531468531468
},
"micro": {
"recall": 0.9040178571428571,
"f1_score": 0.9070548712206048,
"precision": 0.9101123595505618
},
"nuclei_tumor": {
"FN": 36,
"FP": 32,
"TP": 395,
"recall": 0.9164733178654292,
"f1_score": 0.9207459207459207,
"precision": 0.9250585480093677
},
"nuclei_stroma": {
"FN": 3,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 4,
"FP": 6,
"TP": 10,
"recall": 0.7142857142857143,
"f1_score": 0.6666666666666666,
"precision": 0.625
},
"nuclei_endothelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8844207114514774,
"tissue_tumor": 0.9624166157483883,
"tissue_stroma": 0.4596869415089978,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_012.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4279669512906858
},
"micro": {
"recall": 0.6551724137931034,
"f1_score": 0.6433408577878102,
"precision": 0.6319290465631929
},
"nuclei_tumor": {
"FN": 9,
"FP": 84,
"TP": 65,
"recall": 0.8783783783783784,
"f1_score": 0.5829596412556054,
"precision": 0.436241610738255
},
"nuclei_stroma": {
"FN": 8,
"FP": 15,
"TP": 11,
"recall": 0.5789473684210527,
"f1_score": 0.4888888888888889,
"precision": 0.4230769230769231
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 51,
"FP": 17,
"TP": 23,
"recall": 0.3108108108108108,
"f1_score": 0.40350877192982454,
"precision": 0.575
},
"nuclei_lymphocyte": {
"FN": 21,
"FP": 31,
"TP": 138,
"recall": 0.8679245283018868,
"f1_score": 0.8414634146341463,
"precision": 0.8165680473372781
},
"nuclei_endothelium": {
"FN": 42,
"FP": 2,
"TP": 25,
"recall": 0.373134328358209,
"f1_score": 0.5319148936170213,
"precision": 0.9259259259259259
},
"nuclei_melanophage": {
"FN": 19,
"FP": 15,
"TP": 23,
"recall": 0.5476190476190477,
"f1_score": 0.575,
"precision": 0.6052631578947368
}
},
"tissue_metrics": {
"average_dice": 0.8174859571427184,
"tissue_tumor": 0.8305747563845175,
"tissue_stroma": 0.9408278661123259,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.3160271632167492
}
},
{
"filename": "final_test_set_primary_roi_013.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3107873461542338
},
"micro": {
"recall": 0.7682539682539683,
"f1_score": 0.7831715210355988,
"precision": 0.7986798679867987
},
"nuclei_tumor": {
"FN": 113,
"FP": 38,
"TP": 392,
"recall": 0.7762376237623763,
"f1_score": 0.8385026737967914,
"precision": 0.9116279069767442
},
"nuclei_stroma": {
"FN": 2,
"FP": 10,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.14285714285714288,
"precision": 0.09090909090909091
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 16,
"FP": 31,
"TP": 18,
"recall": 0.5294117647058824,
"f1_score": 0.4337349397590361,
"precision": 0.3673469387755102
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 38,
"TP": 73,
"recall": 0.9012345679012346,
"f1_score": 0.7604166666666667,
"precision": 0.6576576576576577
},
"nuclei_endothelium": {
"FN": 7,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7431837332332141,
"tissue_tumor": 0.9611230218054175,
"tissue_stroma": 0.7547956433430483,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0176045578329048e-09
}
},
{
"filename": "final_test_set_primary_roi_014.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.44819017982743353
},
"micro": {
"recall": 0.6615776081424937,
"f1_score": 0.6692406692406693,
"precision": 0.6770833333333334
},
"nuclei_tumor": {
"FN": 46,
"FP": 68,
"TP": 161,
"recall": 0.7777777777777778,
"f1_score": 0.738532110091743,
"precision": 0.7030567685589519
},
"nuclei_stroma": {
"FN": 12,
"FP": 7,
"TP": 11,
"recall": 0.4782608695652174,
"f1_score": 0.5365853658536586,
"precision": 0.6111111111111112
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 19,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 43,
"FP": 7,
"TP": 19,
"recall": 0.3064516129032258,
"f1_score": 0.4318181818181818,
"precision": 0.7307692307692307
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 15,
"TP": 45,
"recall": 0.8490566037735849,
"f1_score": 0.7964601769911505,
"precision": 0.75
},
"nuclei_endothelium": {
"FN": 21,
"FP": 4,
"TP": 22,
"recall": 0.5116279069767442,
"f1_score": 0.6376811594202898,
"precision": 0.8461538461538461
},
"nuclei_melanophage": {
"FN": 3,
"FP": 2,
"TP": 2,
"recall": 0.4,
"f1_score": 0.4444444444444445,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.6735907737548262,
"tissue_tumor": 0.9062559854559519,
"tissue_stroma": 0.9146640021565484,
"tissue_necrosis": 1.0,
"tissue_epidermis": 2.382483977227626e-10,
"tissue_blood_vessel": 0.5470338809233827
}
},
{
"filename": "final_test_set_primary_roi_015.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.351575056252009
},
"micro": {
"recall": 0.8861607142857143,
"f1_score": 0.8881431767337807,
"precision": 0.8901345291479821
},
"nuclei_tumor": {
"FN": 23,
"FP": 45,
"TP": 393,
"recall": 0.9447115384615384,
"f1_score": 0.9203747072599532,
"precision": 0.8972602739726028
},
"nuclei_stroma": {
"FN": 2,
"FP": 0,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.5,
"precision": 1.0
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 2,
"TP": 2,
"recall": 0.6666666666666666,
"f1_score": 0.5714285714285715,
"precision": 0.5
},
"nuclei_epithelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 14,
"FP": 1,
"TP": 1,
"recall": 0.06666666666666667,
"f1_score": 0.11764705882352941,
"precision": 0.5
},
"nuclei_endothelium": {
"FN": 11,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.6736120607554849,
"tissue_tumor": 0.9754855970767113,
"tissue_stroma": 0.39257470579647225,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 9.04240888955384e-10
}
},
{
"filename": "final_test_set_primary_roi_016.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.34164383025367995
},
"micro": {
"recall": 0.7217741935483871,
"f1_score": 0.7239635995955511,
"precision": 0.7261663286004056
},
"nuclei_tumor": {
"FN": 58,
"FP": 86,
"TP": 300,
"recall": 0.8379888268156425,
"f1_score": 0.8064516129032259,
"precision": 0.7772020725388601
},
"nuclei_stroma": {
"FN": 11,
"FP": 13,
"TP": 4,
"recall": 0.26666666666666666,
"f1_score": 0.25,
"precision": 0.23529411764705882
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 11,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 46,
"FP": 3,
"TP": 8,
"recall": 0.14814814814814814,
"f1_score": 0.24615384615384614,
"precision": 0.7272727272727273
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 17,
"TP": 40,
"recall": 0.8695652173913043,
"f1_score": 0.7766990291262136,
"precision": 0.7017543859649122
},
"nuclei_endothelium": {
"FN": 7,
"FP": 3,
"TP": 5,
"recall": 0.4166666666666667,
"f1_score": 0.5,
"precision": 0.625
},
"nuclei_melanophage": {
"FN": 10,
"FP": 1,
"TP": 1,
"recall": 0.09090909090909091,
"f1_score": 0.15384615384615385,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.5913799731748306,
"tissue_tumor": 0.8130085539802329,
"tissue_stroma": 0.8371524197210569,
"tissue_necrosis": 1.0,
"tissue_epidermis": 9.254974540254536e-10,
"tissue_blood_vessel": 0.30673889124736553
}
},
{
"filename": "final_test_set_primary_roi_017.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4999480284431473
},
"micro": {
"recall": 0.6818181818181818,
"f1_score": 0.6818181818181818,
"precision": 0.6818181818181818
},
"nuclei_tumor": {
"FN": 37,
"FP": 70,
"TP": 113,
"recall": 0.7533333333333333,
"f1_score": 0.6786786786786786,
"precision": 0.6174863387978142
},
"nuclei_stroma": {
"FN": 34,
"FP": 18,
"TP": 11,
"recall": 0.24444444444444444,
"f1_score": 0.29729729729729726,
"precision": 0.3793103448275862
},
"nuclei_epithelium": {
"FN": 18,
"FP": 7,
"TP": 80,
"recall": 0.8163265306122449,
"f1_score": 0.8648648648648648,
"precision": 0.9195402298850575
},
"nuclei_histiocyte": {
"FN": 38,
"FP": 9,
"TP": 21,
"recall": 0.3559322033898305,
"f1_score": 0.4719101123595506,
"precision": 0.7
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 33,
"TP": 72,
"recall": 0.9230769230769231,
"f1_score": 0.7868852459016394,
"precision": 0.6857142857142857
},
"nuclei_endothelium": {
"FN": 7,
"FP": 2,
"TP": 3,
"recall": 0.3,
"f1_score": 0.4,
"precision": 0.6
},
"nuclei_melanophage": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8121420213487969,
"tissue_tumor": 0.96982612551452,
"tissue_stroma": 0.9717306389592463,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.9283203756115083,
"tissue_blood_vessel": 0.19083296665870947
}
},
{
"filename": "final_test_set_primary_roi_018.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.23156266548100043
},
"micro": {
"recall": 0.43626373626373627,
"f1_score": 0.43770672546857775,
"precision": 0.4391592920353982
},
"nuclei_tumor": {
"FN": 474,
"FP": 6,
"TP": 79,
"recall": 0.14285714285714285,
"f1_score": 0.24764890282131663,
"precision": 0.9294117647058824
},
"nuclei_stroma": {
"FN": 17,
"FP": 13,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 2,
"FP": 228,
"TP": 2,
"recall": 0.5,
"f1_score": 0.017094017094017096,
"precision": 0.008695652173913044
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 222,
"TP": 310,
"recall": 0.9717868338557993,
"f1_score": 0.7285546415981199,
"precision": 0.5827067669172933
},
"nuclei_endothelium": {
"FN": 4,
"FP": 37,
"TP": 5,
"recall": 0.5555555555555556,
"f1_score": 0.196078431372549,
"precision": 0.11904761904761904
},
"nuclei_plasma_cell": {
"FN": 7,
"FP": 1,
"TP": 1,
"recall": 0.125,
"f1_score": 0.2,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.7121989489575308,
"tissue_tumor": 0.8107184296610294,
"tissue_stroma": 3.0256545246235134e-11,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.750276315096368
}
},
{
"filename": "final_test_set_primary_roi_019.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4408972545824674
},
"micro": {
"recall": 0.6164383561643836,
"f1_score": 0.6040268456375838,
"precision": 0.5921052631578947
},
"nuclei_tumor": {
"FN": 23,
"FP": 102,
"TP": 89,
"recall": 0.7946428571428571,
"f1_score": 0.5874587458745875,
"precision": 0.46596858638743455
},
"nuclei_stroma": {
"FN": 21,
"FP": 7,
"TP": 5,
"recall": 0.19230769230769232,
"f1_score": 0.2631578947368421,
"precision": 0.4166666666666667
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 7,
"TP": 1,
"recall": 1.0,
"f1_score": 0.2222222222222222,
"precision": 0.125
},
"nuclei_epithelium": {
"FN": 17,
"FP": 2,
"TP": 16,
"recall": 0.48484848484848486,
"f1_score": 0.6274509803921569,
"precision": 0.8888888888888888
},
"nuclei_histiocyte": {
"FN": 47,
"FP": 3,
"TP": 9,
"recall": 0.16071428571428573,
"f1_score": 0.26470588235294124,
"precision": 0.75
},
"nuclei_lymphocyte": {
"FN": 20,
"FP": 27,
"TP": 90,
"recall": 0.8181818181818182,
"f1_score": 0.7929515418502203,
"precision": 0.7692307692307693
},
"nuclei_endothelium": {
"FN": 8,
"FP": 1,
"TP": 15,
"recall": 0.6521739130434783,
"f1_score": 0.7692307692307693,
"precision": 0.9375
},
"nuclei_melanophage": {
"FN": 4,
"FP": 6,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8256575810601128,
"tissue_tumor": 0.8634950856870078,
"tissue_stroma": 0.8715462267537005,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.6909692257463591,
"tissue_blood_vessel": 0.7022773671134963
}
},
{
"filename": "final_test_set_primary_roi_020.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4792818008320628
},
"micro": {
"recall": 0.7283702213279678,
"f1_score": 0.7232767232767233,
"precision": 0.7182539682539683
},
"nuclei_tumor": {
"FN": 67,
"FP": 42,
"TP": 254,
"recall": 0.7912772585669782,
"f1_score": 0.8233387358184765,
"precision": 0.8581081081081081
},
"nuclei_stroma": {
"FN": 36,
"FP": 8,
"TP": 17,
"recall": 0.32075471698113206,
"f1_score": 0.43589743589743585,
"precision": 0.68
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 23,
"FP": 19,
"TP": 15,
"recall": 0.39473684210526316,
"f1_score": 0.41666666666666663,
"precision": 0.4411764705882353
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 63,
"TP": 73,
"recall": 0.9240506329113924,
"f1_score": 0.6790697674418605,
"precision": 0.5367647058823529
},
"nuclei_endothelium": {
"FN": 2,
"FP": 6,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.2,
"precision": 0.14285714285714285
},
"nuclei_melanophage": {
"FN": 1,
"FP": 0,
"TP": 2,
"recall": 0.6666666666666666,
"f1_score": 0.8,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.8593966060811391,
"tissue_tumor": 0.946234244055691,
"tissue_stroma": 0.8769782931089407,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.4737704932410642
}
},
{
"filename": "final_test_set_primary_roi_021.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.47958558900682796
},
"micro": {
"recall": 0.6819484240687679,
"f1_score": 0.6538461538461539,
"precision": 0.6279683377308707
},
"nuclei_tumor": {
"FN": 16,
"FP": 64,
"TP": 109,
"recall": 0.872,
"f1_score": 0.7315436241610737,
"precision": 0.630057803468208
},
"nuclei_stroma": {
"FN": 14,
"FP": 14,
"TP": 5,
"recall": 0.2631578947368421,
"f1_score": 0.2631578947368421,
"precision": 0.2631578947368421
},
"nuclei_histiocyte": {
"FN": 49,
"FP": 22,
"TP": 30,
"recall": 0.379746835443038,
"f1_score": 0.4580152671755725,
"precision": 0.5769230769230769
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 26,
"TP": 85,
"recall": 0.9139784946236559,
"f1_score": 0.8333333333333334,
"precision": 0.7657657657657657
},
"nuclei_endothelium": {
"FN": 14,
"FP": 13,
"TP": 7,
"recall": 0.3333333333333333,
"f1_score": 0.3414634146341463,
"precision": 0.35
},
"nuclei_melanophage": {
"FN": 10,
"FP": 2,
"TP": 2,
"recall": 0.16666666666666666,
"f1_score": 0.25,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.7577384828600058,
"tissue_tumor": 0.8885704332925473,
"tissue_stroma": 0.8831922022120077,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.016929778795474134
}
},
{
"filename": "final_test_set_primary_roi_022.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.44817332754318945
},
"micro": {
"recall": 0.7823343848580442,
"f1_score": 0.771384136858476,
"precision": 0.7607361963190185
},
"nuclei_tumor": {
"FN": 18,
"FP": 49,
"TP": 192,
"recall": 0.9142857142857143,
"f1_score": 0.8514412416851441,
"precision": 0.7966804979253111
},
"nuclei_stroma": {
"FN": 16,
"FP": 10,
"TP": 12,
"recall": 0.42857142857142855,
"f1_score": 0.4799999999999999,
"precision": 0.5454545454545454
},
"nuclei_histiocyte": {
"FN": 12,
"FP": 9,
"TP": 1,
"recall": 0.07692307692307693,
"f1_score": 0.08695652173913043,
"precision": 0.1
},
"nuclei_lymphocyte": {
"FN": 22,
"FP": 3,
"TP": 42,
"recall": 0.65625,
"f1_score": 0.7706422018348624,
"precision": 0.9333333333333333
},
"nuclei_endothelium": {
"FN": 0,
"FP": 6,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 1,
"FP": 1,
"TP": 1,
"recall": 0.5,
"f1_score": 0.5,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.7610101914577536,
"tissue_tumor": 0.9503152367768073,
"tissue_stroma": 0.8547357133639977,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 7.1479627794999095e-09
}
},
{
"filename": "final_test_set_primary_roi_023.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3609652076318743
},
"micro": {
"recall": 0.8862973760932945,
"f1_score": 0.8648648648648648,
"precision": 0.8444444444444444
},
"nuclei_tumor": {
"FN": 34,
"FP": 45,
"TP": 298,
"recall": 0.8975903614457831,
"f1_score": 0.882962962962963,
"precision": 0.8688046647230321
},
"nuclei_stroma": {
"FN": 3,
"FP": 1,
"TP": 1,
"recall": 0.25,
"f1_score": 0.3333333333333333,
"precision": 0.5
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 2,
"TP": 4,
"recall": 0.8,
"f1_score": 0.7272727272727272,
"precision": 0.6666666666666666
},
"nuclei_epithelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 6,
"TP": 1,
"recall": 0.5,
"f1_score": 0.22222222222222224,
"precision": 0.14285714285714285
},
"nuclei_melanophage": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7201536247523592,
"tissue_tumor": 0.9932295357730049,
"tissue_stroma": 0.6075385833974232,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 4.591368206651202e-09
}
},
{
"filename": "final_test_set_primary_roi_024.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3982377338484319
},
"micro": {
"recall": 0.6359338061465721,
"f1_score": 0.6633785450061653,
"precision": 0.6932989690721649
},
"nuclei_tumor": {
"FN": 18,
"FP": 85,
"TP": 95,
"recall": 0.8407079646017699,
"f1_score": 0.6484641638225256,
"precision": 0.5277777777777778
},
"nuclei_stroma": {
"FN": 24,
"FP": 6,
"TP": 14,
"recall": 0.3684210526315789,
"f1_score": 0.48275862068965514,
"precision": 0.7
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_histiocyte": {
"FN": 24,
"FP": 11,
"TP": 3,
"recall": 0.1111111111111111,
"f1_score": 0.14634146341463417,
"precision": 0.21428571428571427
},
"nuclei_lymphocyte": {
"FN": 68,
"FP": 9,
"TP": 147,
"recall": 0.6837209302325581,
"f1_score": 0.7924528301886793,
"precision": 0.9423076923076923
},
"nuclei_endothelium": {
"FN": 8,
"FP": 7,
"TP": 1,
"recall": 0.1111111111111111,
"f1_score": 0.11764705882352941,
"precision": 0.125
},
"nuclei_melanophage": {
"FN": 11,
"FP": 1,
"TP": 9,
"recall": 0.45,
"f1_score": 0.6,
"precision": 0.9
}
},
"tissue_metrics": {
"average_dice": 0.9702222543234409,
"tissue_tumor": 0.9229644355482189,
"tissue_stroma": 0.9281468360689855,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_025.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2972873921491958
},
"micro": {
"recall": 0.43423423423423424,
"f1_score": 0.4254192409532215,
"precision": 0.41695501730103807
},
"nuclei_tumor": {
"FN": 16,
"FP": 275,
"TP": 68,
"recall": 0.8095238095238095,
"f1_score": 0.3185011709601874,
"precision": 0.19825072886297376
},
"nuclei_stroma": {
"FN": 32,
"FP": 8,
"TP": 12,
"recall": 0.2727272727272727,
"f1_score": 0.37499999999999994,
"precision": 0.6
},
"nuclei_apoptosis": {
"FN": 8,
"FP": 0,
"TP": 1,
"recall": 0.1111111111111111,
"f1_score": 0.19999999999999998,
"precision": 1.0
},
"nuclei_histiocyte": {
"FN": 76,
"FP": 12,
"TP": 5,
"recall": 0.06172839506172839,
"f1_score": 0.10204081632653061,
"precision": 0.29411764705882354
},
"nuclei_lymphocyte": {
"FN": 89,
"FP": 28,
"TP": 124,
"recall": 0.5821596244131455,
"f1_score": 0.6794520547945204,
"precision": 0.8157894736842105
},
"nuclei_neutrophil": {
"FN": 7,
"FP": 1,
"TP": 2,
"recall": 0.2222222222222222,
"f1_score": 0.3333333333333333,
"precision": 0.6666666666666666
},
"nuclei_endothelium": {
"FN": 45,
"FP": 4,
"TP": 24,
"recall": 0.34782608695652173,
"f1_score": 0.49484536082474223,
"precision": 0.8571428571428571
},
"nuclei_melanophage": {
"FN": 41,
"FP": 7,
"TP": 5,
"recall": 0.10869565217391304,
"f1_score": 0.1724137931034483,
"precision": 0.4166666666666667
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8541363026753285,
"tissue_tumor": 0.7164653402506526,
"tissue_stroma": 0.8720966985053015,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6821194746206884
}
},
{
"filename": "final_test_set_primary_roi_026.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.34231802308971127
},
"micro": {
"recall": 0.7761194029850746,
"f1_score": 0.7623036649214661,
"precision": 0.7489711934156379
},
"nuclei_tumor": {
"FN": 31,
"FP": 86,
"TP": 325,
"recall": 0.9129213483146067,
"f1_score": 0.8474576271186439,
"precision": 0.7907542579075426
},
"nuclei_stroma": {
"FN": 41,
"FP": 12,
"TP": 8,
"recall": 0.16326530612244897,
"f1_score": 0.23188405797101447,
"precision": 0.4
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 6,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 12,
"FP": 17,
"TP": 9,
"recall": 0.42857142857142855,
"f1_score": 0.3829787234042554,
"precision": 0.34615384615384615
},
"nuclei_endothelium": {
"FN": 10,
"FP": 4,
"TP": 19,
"recall": 0.6551724137931034,
"f1_score": 0.7307692307692308,
"precision": 0.8260869565217391
},
"nuclei_melanophage": {
"FN": 4,
"FP": 1,
"TP": 3,
"recall": 0.42857142857142855,
"f1_score": 0.5454545454545454,
"precision": 0.75
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.9373012486166598,
"tissue_tumor": 0.95365915576578,
"tissue_stroma": 0.9464523602669519,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7863947270505666
}
},
{
"filename": "final_test_set_primary_roi_027.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3501738422820449
},
"micro": {
"recall": 0.61328125,
"f1_score": 0.6103012633624879,
"precision": 0.6073500967117988
},
"nuclei_tumor": {
"FN": 12,
"FP": 127,
"TP": 25,
"recall": 0.6756756756756757,
"f1_score": 0.2645502645502646,
"precision": 0.16447368421052633
},
"nuclei_stroma": {
"FN": 33,
"FP": 7,
"TP": 9,
"recall": 0.21428571428571427,
"f1_score": 0.31034482758620685,
"precision": 0.5625
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 7,
"FP": 1,
"TP": 1,
"recall": 0.125,
"f1_score": 0.2,
"precision": 0.5
},
"nuclei_histiocyte": {
"FN": 61,
"FP": 24,
"TP": 16,
"recall": 0.2077922077922078,
"f1_score": 0.27350427350427353,
"precision": 0.4
},
"nuclei_lymphocyte": {
"FN": 52,
"FP": 31,
"TP": 232,
"recall": 0.8169014084507042,
"f1_score": 0.8482632541133456,
"precision": 0.8821292775665399
},
"nuclei_endothelium": {
"FN": 27,
"FP": 8,
"TP": 25,
"recall": 0.4807692307692308,
"f1_score": 0.5882352941176471,
"precision": 0.7575757575757576
},
"nuclei_melanophage": {
"FN": 5,
"FP": 1,
"TP": 6,
"recall": 0.5454545454545454,
"f1_score": 0.6666666666666665,
"precision": 0.8571428571428571
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.7538995973279963,
"tissue_tumor": 0.8378713550501063,
"tissue_stroma": 0.9740588472571511,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.2546896777496572,
"tissue_blood_vessel": 0.7028781065830666
}
},
{
"filename": "final_test_set_primary_roi_028.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.36522703331835493
},
"micro": {
"recall": 0.7049180327868853,
"f1_score": 0.6963562753036437,
"precision": 0.688
},
"nuclei_tumor": {
"FN": 44,
"FP": 136,
"TP": 297,
"recall": 0.8709677419354839,
"f1_score": 0.7674418604651162,
"precision": 0.6859122401847575
},
"nuclei_stroma": {
"FN": 11,
"FP": 2,
"TP": 6,
"recall": 0.35294117647058826,
"f1_score": 0.48,
"precision": 0.75
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 3,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 31,
"FP": 31,
"TP": 13,
"recall": 0.29545454545454547,
"f1_score": 0.29545454545454547,
"precision": 0.29545454545454547
},
"nuclei_lymphocyte": {
"FN": 90,
"FP": 20,
"TP": 109,
"recall": 0.5477386934673367,
"f1_score": 0.6646341463414634,
"precision": 0.8449612403100775
},
"nuclei_endothelium": {
"FN": 4,
"FP": 0,
"TP": 5,
"recall": 0.5555555555555556,
"f1_score": 0.7142857142857143,
"precision": 1.0
},
"nuclei_melanophage": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8844084831947459,
"tissue_tumor": 0.9726953693402494,
"tissue_stroma": 0.8959939668515389,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5533530797819414
}
},
{
"filename": "final_test_set_primary_roi_029.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2391021654322384
},
"micro": {
"recall": 0.8858560794044665,
"f1_score": 0.8814814814814814,
"precision": 0.8771498771498771
},
"nuclei_tumor": {
"FN": 33,
"FP": 34,
"TP": 351,
"recall": 0.9140625,
"f1_score": 0.9128738621586476,
"precision": 0.9116883116883117
},
"nuclei_stroma": {
"FN": 9,
"FP": 2,
"TP": 6,
"recall": 0.4,
"f1_score": 0.5217391304347827,
"precision": 0.75
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 7,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 4,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8538049184018277,
"tissue_tumor": 0.968138474440042,
"tissue_stroma": 0.3008861175690968,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_030.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4140445790427251
},
"micro": {
"recall": 0.7247474747474747,
"f1_score": 0.7202007528230866,
"precision": 0.71571072319202
},
"nuclei_tumor": {
"FN": 16,
"FP": 47,
"TP": 139,
"recall": 0.896774193548387,
"f1_score": 0.81524926686217,
"precision": 0.7473118279569892
},
"nuclei_stroma": {
"FN": 28,
"FP": 10,
"TP": 20,
"recall": 0.4166666666666667,
"f1_score": 0.5128205128205129,
"precision": 0.6666666666666666
},
"nuclei_apoptosis": {
"FN": 7,
"FP": 3,
"TP": 1,
"recall": 0.125,
"f1_score": 0.16666666666666666,
"precision": 0.25
},
"nuclei_epithelium": {
"FN": 14,
"FP": 9,
"TP": 20,
"recall": 0.5882352941176471,
"f1_score": 0.6349206349206349,
"precision": 0.6896551724137931
},
"nuclei_histiocyte": {
"FN": 16,
"FP": 11,
"TP": 5,
"recall": 0.23809523809523808,
"f1_score": 0.27027027027027023,
"precision": 0.3125
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 31,
"TP": 94,
"recall": 0.8785046728971962,
"f1_score": 0.8103448275862069,
"precision": 0.752
},
"nuclei_neutrophil": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_endothelium": {
"FN": 14,
"FP": 1,
"TP": 8,
"recall": 0.36363636363636365,
"f1_score": 0.5161290322580644,
"precision": 0.8888888888888888
},
"nuclei_melanophage": {
"FN": 1,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8438373209117312,
"tissue_tumor": 0.9596420314589333,
"tissue_stroma": 0.9794861516421389,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.7604529135818417,
"tissue_blood_vessel": 0.5196055078757418
}
},
{
"filename": "final_test_set_primary_roi_031.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.25514784631291876
},
"micro": {
"recall": 0.4874715261958998,
"f1_score": 0.48089887640449436,
"precision": 0.4745011086474501
},
"nuclei_tumor": {
"FN": 8,
"FP": 157,
"TP": 51,
"recall": 0.864406779661017,
"f1_score": 0.3820224719101124,
"precision": 0.24519230769230768
},
"nuclei_stroma": {
"FN": 26,
"FP": 9,
"TP": 5,
"recall": 0.16129032258064516,
"f1_score": 0.2222222222222222,
"precision": 0.35714285714285715
},
"nuclei_apoptosis": {
"FN": 1,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 149,
"FP": 16,
"TP": 44,
"recall": 0.22797927461139897,
"f1_score": 0.34782608695652173,
"precision": 0.7333333333333333
},
"nuclei_lymphocyte": {
"FN": 33,
"FP": 40,
"TP": 110,
"recall": 0.7692307692307693,
"f1_score": 0.7508532423208191,
"precision": 0.7333333333333333
},
"nuclei_endothelium": {
"FN": 0,
"FP": 9,
"TP": 2,
"recall": 1.0,
"f1_score": 0.3076923076923077,
"precision": 0.18181818181818182
},
"nuclei_melanophage": {
"FN": 7,
"FP": 3,
"TP": 2,
"recall": 0.2222222222222222,
"f1_score": 0.2857142857142857,
"precision": 0.4
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.9104633694011302,
"tissue_tumor": 0.9244297041594867,
"tissue_stroma": 0.9867266130217746,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6411605298243894
}
},
{
"filename": "final_test_set_primary_roi_032.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5836726558351449
},
"micro": {
"recall": 0.8665430954587581,
"f1_score": 0.876699484294421,
"precision": 0.8870967741935484
},
"nuclei_tumor": {
"FN": 13,
"FP": 9,
"TP": 31,
"recall": 0.7045454545454546,
"f1_score": 0.7380952380952381,
"precision": 0.775
},
"nuclei_stroma": {
"FN": 31,
"FP": 7,
"TP": 15,
"recall": 0.32608695652173914,
"f1_score": 0.4411764705882353,
"precision": 0.6818181818181818
},
"nuclei_apoptosis": {
"FN": 6,
"FP": 4,
"TP": 2,
"recall": 0.25,
"f1_score": 0.28571428571428575,
"precision": 0.3333333333333333
},
"nuclei_histiocyte": {
"FN": 22,
"FP": 34,
"TP": 64,
"recall": 0.7441860465116279,
"f1_score": 0.6956521739130435,
"precision": 0.6530612244897959
},
"nuclei_lymphocyte": {
"FN": 72,
"FP": 61,
"TP": 821,
"recall": 0.9193729003359462,
"f1_score": 0.9250704225352112,
"precision": 0.9308390022675737
},
"nuclei_endothelium": {
"FN": 0,
"FP": 4,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 0,
"FP": 0,
"TP": 2,
"recall": 1.0,
"f1_score": 1.0,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.9782533226202952,
"tissue_tumor": 0.9016269561306556,
"tissue_stroma": 0.9896396569708203,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_033.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3089632383312681
},
"micro": {
"recall": 0.9565217391304348,
"f1_score": 0.9223181257706535,
"precision": 0.8904761904761904
},
"nuclei_tumor": {
"FN": 17,
"FP": 42,
"TP": 374,
"recall": 0.9565217391304348,
"f1_score": 0.9268897149938042,
"precision": 0.8990384615384616
},
"nuclei_stroma": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7956673312075143,
"tissue_tumor": 0.9783366558126905,
"tissue_stroma": 2.2488081311844903e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_034.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.24646015925073572
},
"micro": {
"recall": 0.7154046997389034,
"f1_score": 0.7116883116883118,
"precision": 0.7080103359173127
},
"nuclei_tumor": {
"FN": 25,
"FP": 97,
"TP": 204,
"recall": 0.8908296943231441,
"f1_score": 0.769811320754717,
"precision": 0.6777408637873754
},
"nuclei_stroma": {
"FN": 3,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_apoptosis": {
"FN": 6,
"FP": 1,
"TP": 3,
"recall": 0.3333333333333333,
"f1_score": 0.46153846153846156,
"precision": 0.75
},
"nuclei_histiocyte": {
"FN": 35,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 37,
"FP": 10,
"TP": 67,
"recall": 0.6442307692307693,
"f1_score": 0.7403314917127072,
"precision": 0.8701298701298701
},
"nuclei_endothelium": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 2,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.5691507597125309,
"tissue_tumor": 0.8020066608435531,
"tissue_stroma": 0.04374713443287109,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.2862306825953642e-09
}
},
{
"filename": "final_test_set_primary_roi_035.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.39182699374030044
},
"micro": {
"recall": 0.6772228989037758,
"f1_score": 0.6915422885572139,
"precision": 0.7064803049555273
},
"nuclei_tumor": {
"FN": 6,
"FP": 109,
"TP": 45,
"recall": 0.8823529411764706,
"f1_score": 0.4390243902439025,
"precision": 0.2922077922077922
},
"nuclei_stroma": {
"FN": 36,
"FP": 7,
"TP": 11,
"recall": 0.23404255319148937,
"f1_score": 0.3384615384615385,
"precision": 0.6111111111111112
},
"nuclei_apoptosis": {
"FN": 15,
"FP": 2,
"TP": 3,
"recall": 0.16666666666666666,
"f1_score": 0.2608695652173913,
"precision": 0.6
},
"nuclei_histiocyte": {
"FN": 116,
"FP": 21,
"TP": 36,
"recall": 0.23684210526315788,
"f1_score": 0.3444976076555024,
"precision": 0.631578947368421
},
"nuclei_lymphocyte": {
"FN": 79,
"FP": 86,
"TP": 452,
"recall": 0.8512241054613936,
"f1_score": 0.8456501403180542,
"precision": 0.8401486988847584
},
"nuclei_neutrophil": {
"FN": 2,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_endothelium": {
"FN": 11,
"FP": 6,
"TP": 9,
"recall": 0.45,
"f1_score": 0.5142857142857143,
"precision": 0.6
}
},
"tissue_metrics": {
"average_dice": 0.6931115735455781,
"tissue_tumor": 0.5987635338783275,
"tissue_stroma": 0.8667943333583314,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 4.912315171728489e-10
}
},
{
"filename": "final_test_set_primary_roi_036.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3617697563467015
},
"micro": {
"recall": 0.5511363636363636,
"f1_score": 0.5337001375515819,
"precision": 0.5173333333333333
},
"nuclei_tumor": {
"FN": 10,
"FP": 140,
"TP": 85,
"recall": 0.8947368421052632,
"f1_score": 0.53125,
"precision": 0.37777777777777777
},
"nuclei_stroma": {
"FN": 11,
"FP": 9,
"TP": 4,
"recall": 0.26666666666666666,
"f1_score": 0.28571428571428575,
"precision": 0.3076923076923077
},
"nuclei_apoptosis": {
"FN": 4,
"FP": 1,
"TP": 1,
"recall": 0.2,
"f1_score": 0.28571428571428575,
"precision": 0.5
},
"nuclei_epithelium": {
"FN": 0,
"FP": 7,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 61,
"FP": 2,
"TP": 8,
"recall": 0.11594202898550725,
"f1_score": 0.20253164556962025,
"precision": 0.8
},
"nuclei_lymphocyte": {
"FN": 58,
"FP": 10,
"TP": 82,
"recall": 0.5857142857142857,
"f1_score": 0.7068965517241379,
"precision": 0.8913043478260869
},
"nuclei_endothelium": {
"FN": 1,
"FP": 10,
"TP": 2,
"recall": 0.6666666666666666,
"f1_score": 0.26666666666666666,
"precision": 0.16666666666666666
},
"nuclei_melanophage": {
"FN": 13,
"FP": 2,
"TP": 12,
"recall": 0.48,
"f1_score": 0.6153846153846153,
"precision": 0.8571428571428571
}
},
"tissue_metrics": {
"average_dice": 0.7518186180398965,
"tissue_tumor": 0.8449783971843696,
"tissue_stroma": 0.9141146889812279,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 4.033884614627331e-09
}
},
{
"filename": "final_test_set_primary_roi_037.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2176160742802092
},
"micro": {
"recall": 0.4260204081632653,
"f1_score": 0.41133004926108374,
"precision": 0.3976190476190476
},
"nuclei_tumor": {
"FN": 13,
"FP": 246,
"TP": 113,
"recall": 0.8968253968253969,
"f1_score": 0.465979381443299,
"precision": 0.3147632311977716
},
"nuclei_stroma": {
"FN": 9,
"FP": 1,
"TP": 3,
"recall": 0.25,
"f1_score": 0.375,
"precision": 0.75
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 97,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_lymphocyte": {
"FN": 80,
"FP": 3,
"TP": 48,
"recall": 0.375,
"f1_score": 0.5363128491620112,
"precision": 0.9411764705882353
},
"nuclei_endothelium": {
"FN": 18,
"FP": 0,
"TP": 2,
"recall": 0.1,
"f1_score": 0.18181818181818182,
"precision": 1.0
},
"nuclei_melanophage": {
"FN": 8,
"FP": 1,
"TP": 1,
"recall": 0.1111111111111111,
"f1_score": 0.1818181818181818,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.8100153443250783,
"tissue_tumor": 0.878502307949163,
"tissue_stroma": 0.8990066394028022,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.2725677742734258
}
},
{
"filename": "final_test_set_primary_roi_038.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4796379139753586
},
"micro": {
"recall": 0.6702127659574468,
"f1_score": 0.672358591248666,
"precision": 0.6745182012847966
},
"nuclei_tumor": {
"FN": 16,
"FP": 64,
"TP": 84,
"recall": 0.84,
"f1_score": 0.6774193548387097,
"precision": 0.5675675675675675
},
"nuclei_stroma": {
"FN": 48,
"FP": 5,
"TP": 19,
"recall": 0.2835820895522388,
"f1_score": 0.41758241758241754,
"precision": 0.7916666666666666
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 5,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 10,
"FP": 8,
"TP": 9,
"recall": 0.47368421052631576,
"f1_score": 0.5,
"precision": 0.5294117647058824
},
"nuclei_histiocyte": {
"FN": 51,
"FP": 22,
"TP": 40,
"recall": 0.43956043956043955,
"f1_score": 0.522875816993464,
"precision": 0.6451612903225806
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 47,
"TP": 145,
"recall": 0.90625,
"f1_score": 0.8238636363636364,
"precision": 0.7552083333333334
},
"nuclei_endothelium": {
"FN": 13,
"FP": 1,
"TP": 17,
"recall": 0.5666666666666667,
"f1_score": 0.7083333333333334,
"precision": 0.9444444444444444
},
"nuclei_melanophage": {
"FN": 1,
"FP": 0,
"TP": 1,
"recall": 0.5,
"f1_score": 0.6666666666666666,
"precision": 1.0
},
"nuclei_plasma_cell": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.6940036022917836,
"tissue_tumor": 0.8990534894125762,
"tissue_stroma": 0.9766598754788407,
"tissue_necrosis": 1.0,
"tissue_epidermis": 2.7782408171422347e-10,
"tissue_blood_vessel": 0.5943046462896772
}
},
{
"filename": "final_test_set_primary_roi_039.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3363191366242568
},
"micro": {
"recall": 0.6539509536784741,
"f1_score": 0.6566347469220246,
"precision": 0.6593406593406593
},
"nuclei_tumor": {
"FN": 58,
"FP": 52,
"TP": 173,
"recall": 0.7489177489177489,
"f1_score": 0.7587719298245614,
"precision": 0.7688888888888888
},
"nuclei_stroma": {
"FN": 4,
"FP": 13,
"TP": 2,
"recall": 0.3333333333333333,
"f1_score": 0.19047619047619044,
"precision": 0.13333333333333333
},
"nuclei_apoptosis": {
"FN": 5,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 12,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 29,
"FP": 14,
"TP": 14,
"recall": 0.32558139534883723,
"f1_score": 0.3943661971830986,
"precision": 0.5
},
"nuclei_lymphocyte": {
"FN": 29,
"FP": 18,
"TP": 50,
"recall": 0.6329113924050633,
"f1_score": 0.6802721088435374,
"precision": 0.7352941176470589
},
"nuclei_neutrophil": {
"FN": 0,
"FP": 1,
"TP": 1,
"recall": 1.0,
"f1_score": 0.6666666666666666,
"precision": 0.5
},
"nuclei_endothelium": {
"FN": 2,
"FP": 14,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7669163230662385,
"tissue_tumor": 0.9831059726087517,
"tissue_stroma": 0.8514756405541837,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.1682567168945e-09
}
},
{
"filename": "final_test_set_primary_roi_040.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4241948587209537
},
"micro": {
"recall": 0.7257142857142858,
"f1_score": 0.7309352517985612,
"precision": 0.736231884057971
},
"nuclei_tumor": {
"FN": 27,
"FP": 54,
"TP": 220,
"recall": 0.8906882591093117,
"f1_score": 0.8445297504798464,
"precision": 0.8029197080291971
},
"nuclei_stroma": {
"FN": 3,
"FP": 22,
"TP": 13,
"recall": 0.8125,
"f1_score": 0.5098039215686275,
"precision": 0.37142857142857144
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_epithelium": {
"FN": 16,
"FP": 5,
"TP": 5,
"recall": 0.23809523809523808,
"f1_score": 0.3225806451612903,
"precision": 0.5
},
"nuclei_histiocyte": {
"FN": 15,
"FP": 0,
"TP": 1,
"recall": 0.0625,
"f1_score": 0.11764705882352941,
"precision": 1.0
},
"nuclei_lymphocyte": {
"FN": 23,
"FP": 8,
"TP": 13,
"recall": 0.3611111111111111,
"f1_score": 0.45614035087719296,
"precision": 0.6190476190476191
},
"nuclei_endothelium": {
"FN": 12,
"FP": 0,
"TP": 1,
"recall": 0.07692307692307693,
"f1_score": 0.14285714285714288,
"precision": 1.0
},
"nuclei_melanophage": {
"FN": 0,
"FP": 0,
"TP": 1,
"recall": 1.0,
"f1_score": 1.0,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.7311927035129437,
"tissue_tumor": 0.9674351057876058,
"tissue_stroma": 0.8797403153781099,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.6580196947547692,
"tissue_blood_vessel": 0.15076840164423383
}
},
{
"filename": "final_test_set_primary_roi_041.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3267726687460839
},
"micro": {
"recall": 0.5628415300546448,
"f1_score": 0.5582655826558265,
"precision": 0.553763440860215
},
"nuclei_tumor": {
"FN": 28,
"FP": 123,
"TP": 169,
"recall": 0.8578680203045685,
"f1_score": 0.6912065439672802,
"precision": 0.5787671232876712
},
"nuclei_stroma": {
"FN": 18,
"FP": 3,
"TP": 6,
"recall": 0.25,
"f1_score": 0.36363636363636365,
"precision": 0.6666666666666666
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 0,
"TP": 3,
"recall": 0.6,
"f1_score": 0.7499999999999999,
"precision": 1.0
},
"nuclei_epithelium": {
"FN": 0,
"FP": 34,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 38,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_lymphocyte": {
"FN": 41,
"FP": 3,
"TP": 23,
"recall": 0.359375,
"f1_score": 0.5111111111111112,
"precision": 0.8846153846153846
},
"nuclei_neutrophil": {
"FN": 1,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_endothelium": {
"FN": 3,
"FP": 3,
"TP": 5,
"recall": 0.625,
"f1_score": 0.625,
"precision": 0.625
},
"nuclei_melanophage": {
"FN": 29,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.7909388427836354,
"tissue_tumor": 0.8603491109476702,
"tissue_stroma": 0.5443114189004499,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5500336840700568
}
},
{
"filename": "final_test_set_primary_roi_042.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.35963558630046605
},
"micro": {
"recall": 0.8076109936575053,
"f1_score": 0.8008385744234802,
"precision": 0.7941787941787942
},
"nuclei_tumor": {
"FN": 18,
"FP": 52,
"TP": 341,
"recall": 0.9498607242339833,
"f1_score": 0.9069148936170213,
"precision": 0.8676844783715013
},
"nuclei_stroma": {
"FN": 8,
"FP": 25,
"TP": 13,
"recall": 0.6190476190476191,
"f1_score": 0.44067796610169496,
"precision": 0.34210526315789475
},
"nuclei_epithelium": {
"FN": 0,
"FP": 6,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 27,
"FP": 2,
"TP": 3,
"recall": 0.1,
"f1_score": 0.17142857142857143,
"precision": 0.6
},
"nuclei_lymphocyte": {
"FN": 7,
"FP": 13,
"TP": 14,
"recall": 0.6666666666666666,
"f1_score": 0.5833333333333334,
"precision": 0.5185185185185185
},
"nuclei_endothelium": {
"FN": 31,
"FP": 0,
"TP": 11,
"recall": 0.2619047619047619,
"f1_score": 0.41509433962264153,
"precision": 1.0
},
"nuclei_melanophage": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.8237100604526857,
"tissue_tumor": 0.9854175504189134,
"tissue_stroma": 0.86895841139215,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.26417434045236476
}
},
{
"filename": "final_test_set_primary_roi_043.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3055670009200125
},
"micro": {
"recall": 0.6977058029689609,
"f1_score": 0.6995940460081191,
"precision": 0.7014925373134329
},
"nuclei_tumor": {
"FN": 62,
"FP": 62,
"TP": 186,
"recall": 0.75,
"f1_score": 0.75,
"precision": 0.75
},
"nuclei_stroma": {
"FN": 7,
"FP": 9,
"TP": 1,
"recall": 0.125,
"f1_score": 0.11111111111111112,
"precision": 0.1
},
"nuclei_apoptosis": {
"FN": 2,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 126,
"FP": 25,
"TP": 74,
"recall": 0.37,
"f1_score": 0.49498327759197325,
"precision": 0.7474747474747475
},
"nuclei_lymphocyte": {
"FN": 25,
"FP": 117,
"TP": 256,
"recall": 0.9110320284697508,
"f1_score": 0.782874617737003,
"precision": 0.6863270777479893
},
"nuclei_endothelium": {
"FN": 0,
"FP": 5,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_plasma_cell": {
"FN": 2,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.9644101517047516,
"tissue_tumor": 0.9203725103201482,
"tissue_stroma": 0.9016782482036098,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_044.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.27461859911641173
},
"micro": {
"recall": 0.7367387033398821,
"f1_score": 0.7142857142857143,
"precision": 0.6931608133086876
},
"nuclei_tumor": {
"FN": 22,
"FP": 89,
"TP": 334,
"recall": 0.9382022471910112,
"f1_score": 0.8575096277278562,
"precision": 0.789598108747045
},
"nuclei_stroma": {
"FN": 1,
"FP": 6,
"TP": 2,
"recall": 0.6666666666666666,
"f1_score": 0.36363636363636365,
"precision": 0.25
},
"nuclei_apoptosis": {
"FN": 51,
"FP": 16,
"TP": 17,
"recall": 0.25,
"f1_score": 0.33663366336633666,
"precision": 0.5151515151515151
},
"nuclei_epithelium": {
"FN": 0,
"FP": 3,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_histiocyte": {
"FN": 11,
"FP": 0,
"TP": 3,
"recall": 0.21428571428571427,
"f1_score": 0.35294117647058826,
"precision": 1.0
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 38,
"TP": 15,
"recall": 0.5357142857142857,
"f1_score": 0.3703703703703703,
"precision": 0.2830188679245283
},
"nuclei_neutrophil": {
"FN": 31,
"FP": 3,
"TP": 4,
"recall": 0.11428571428571428,
"f1_score": 0.19047619047619044,
"precision": 0.5714285714285714
},
"nuclei_endothelium": {
"FN": 5,
"FP": 10,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_melanophage": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.40056987489857143,
"tissue_tumor": 0.907571786642654,
"tissue_stroma": 0.09527758767415859,
"tissue_necrosis": 6.493590825433215e-11,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.1110864201783198e-10
}
},
{
"filename": "final_test_set_primary_roi_045.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5376878431867692
},
"micro": {
"recall": 0.8122743682310469,
"f1_score": 0.7666098807495741,
"precision": 0.7258064516129032
},
"nuclei_tumor": {
"FN": 16,
"FP": 31,
"TP": 187,
"recall": 0.9211822660098522,
"f1_score": 0.8883610451306413,
"precision": 0.8577981651376146
},
"nuclei_stroma": {
"FN": 28,
"FP": 3,
"TP": 6,
"recall": 0.17647058823529413,
"f1_score": 0.27906976744186046,
"precision": 0.6666666666666666
},
"nuclei_apoptosis": {
"FN": 0,
"FP": 0,
"TP": 1,
"recall": 1.0,
"f1_score": 1.0,
"precision": 1.0
},
"nuclei_epithelium": {
"FN": 6,
"FP": 51,
"TP": 31,
"recall": 0.8378378378378378,
"f1_score": 0.5210084033613445,
"precision": 0.3780487804878049
},
"nuclei_lymphocyte": {
"FN": 2,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.8768268471632915,
"tissue_tumor": 0.9781267458689589,
"tissue_stroma": 0.5503880444745616,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.855619445472937,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_046.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3678207647208307
},
"micro": {
"recall": 0.6512968299711815,
"f1_score": 0.6393210749646394,
"precision": 0.6277777777777778
},
"nuclei_tumor": {
"FN": 8,
"FP": 85,
"TP": 64,
"recall": 0.8888888888888888,
"f1_score": 0.5791855203619909,
"precision": 0.42953020134228187
},
"nuclei_stroma": {
"FN": 4,
"FP": 10,
"TP": 4,
"recall": 0.5,
"f1_score": 0.36363636363636365,
"precision": 0.2857142857142857
},
"nuclei_epithelium": {
"FN": 26,
"FP": 28,
"TP": 147,
"recall": 0.8497109826589595,
"f1_score": 0.8448275862068966,
"precision": 0.84
},
"nuclei_histiocyte": {
"FN": 39,
"FP": 3,
"TP": 1,
"recall": 0.025,
"f1_score": 0.045454545454545456,
"precision": 0.25
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 1,
"TP": 6,
"recall": 0.42857142857142855,
"f1_score": 0.5714285714285714,
"precision": 0.8571428571428571
},
"nuclei_endothelium": {
"FN": 32,
"FP": 7,
"TP": 4,
"recall": 0.1111111111111111,
"f1_score": 0.1702127659574468,
"precision": 0.36363636363636365
},
"nuclei_melanophage": {
"FN": 4,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
}
},
"tissue_metrics": {
"average_dice": 0.8382922401200975,
"tissue_tumor": 0.8940456077893278,
"tissue_stroma": 0.9389572334971309,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.9645749469712339,
"tissue_blood_vessel": 0.3938834123427954
}
},
{
"filename": "final_test_set_primary_roi_047.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.621161630186901
},
"micro": {
"recall": 0.85,
"f1_score": 0.85,
"precision": 0.85
},
"nuclei_tumor": {
"FN": 14,
"FP": 19,
"TP": 122,
"recall": 0.8970588235294118,
"f1_score": 0.8808664259927798,
"precision": 0.8652482269503546
},
"nuclei_stroma": {
"FN": 1,
"FP": 4,
"TP": 3,
"recall": 0.75,
"f1_score": 0.5454545454545454,
"precision": 0.42857142857142855
},
"nuclei_epithelium": {
"FN": 16,
"FP": 12,
"TP": 77,
"recall": 0.8279569892473119,
"f1_score": 0.8461538461538461,
"precision": 0.8651685393258427
},
"nuclei_lymphocyte": {
"FN": 3,
"FP": 1,
"TP": 1,
"recall": 0.25,
"f1_score": 0.3333333333333333,
"precision": 0.5
},
"nuclei_endothelium": {
"FN": 2,
"FP": 0,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.5,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 0.815163624975648,
"tissue_tumor": 0.9239473937937749,
"tissue_stroma": 0.6129465284750948,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.9589006080163929,
"tissue_blood_vessel": 0.5800235945929771
}
}
],
"aggregates": {
"f1_nuclei": {
"nuclei_tumor": 0.7299423330466306,
"nuclei_stroma": 0.26183007651744933,
"nuclei_apoptosis": 0.12296470698753968,
"nuclei_epithelium": 0.08940898546686238,
"nuclei_histiocyte": 0.1537811347280723,
"nuclei_lymphocyte": 0.6155426544414474,
"nuclei_neutrophil": 0.03123944613306315,
"nuclei_endothelium": 0.22047017249630765,
"nuclei_melanophage": 0.1420770447524983,
"nuclei_plasma_cell": 0.029896994258696383
},
"dice_tissue": {
"average_dice": 0.7871424282146013,
"tissue_tumor": 0.89047681844296,
"tissue_stroma": 0.6304793251511318,
"tissue_necrosis": 0.9328297037182656,
"tissue_epidermis": 0.93116512065491,
"tissue_blood_vessel": 0.5507611731057396
},
"macro_f1_nuclei": 0.23971535488285672,
"micro_dice_tissue": {
"tissue_tumor": 0.9143426343260436,
"tissue_stroma": 0.8129198922289632,
"tissue_necrosis": 0.5718368829925368,
"tissue_epidermis": 0.8616631918917027,
"average_micro_dice": 0.7268504583895503,
"tissue_blood_vessel": 0.47348969050850553
}
}
}