Evaluation

ID
b42fc26e-bdf2-4b37-a150-eb9b549f2e5e
Submission ID
aaccfa84-f984-44df-b95b-99058c149614
Method ID
dc854b14-ba0a-43df-af86-bc99177f9066
Status
Succeeded
User
User Mugshot gdeotale123 
Challenge
PUMA
Phase
Track 2: Preliminary test phase
Algorithm
LEO10 (Image Version e8b4db52-fa2c-47cb-a47b-6a79b444a125 )
Submission created
Jan. 22, 2025, 1:46 p.m.
Result created
Jan. 22, 2025, 1:46 p.m.
Position on leaderboard
45
Comment:
4%

Metrics

{
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}