Evaluation
- ID
- e2ac0c71-7a64-412c-8a9a-8594e9a40b88
- Submission ID
- 442a9e28-a18b-493b-8ea1-756ef7fbb36c
- Method ID
- b65f6cbb-4862-4706-8e8c-6a803509d88c
- Status
-
Succeeded
- User
-
NiTo
- Challenge
-
PUMA
- Phase
-
Track 1: Final test phase
- Algorithm
-
BaseLine_and_beyond
(Image Version 6e54fe49-259f-4af9-927e-84c21ab4e0d8
)
- Submission created
- March 13, 2025, 6:12 p.m.
- Result created
- March 13, 2025, 6:12 p.m.
- Position on leaderboard
-
2
- Comment:
- PUMA_Track1_LSM
Metrics
{
"results": [
{
"filename": "final_test_set_metastatic_roi_001.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6874439400755191
},
"micro": {
"recall": 0.8469750889679716,
"f1_score": 0.826388888888889,
"precision": 0.8067796610169492
},
"nuclei_other": {
"FN": 3,
"FP": 12,
"TP": 6,
"recall": 0.6666666666666666,
"f1_score": 0.4444444444444444,
"precision": 0.3333333333333333
},
"nuclei_tumor": {
"FN": 33,
"FP": 39,
"TP": 211,
"recall": 0.8647540983606558,
"f1_score": 0.854251012145749,
"precision": 0.844
},
"nuclei_lymphocyte": {
"FN": 7,
"FP": 6,
"TP": 21,
"recall": 0.75,
"f1_score": 0.7636363636363638,
"precision": 0.7777777777777778
}
},
"tissue_metrics": {
"average_dice": 0.754270288349677,
"tissue_tumor": 0.995004288656078,
"tissue_stroma": 9.345793519084718e-08,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7763470596343718
}
},
{
"filename": "final_test_set_metastatic_roi_002.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.634165841509135
},
"micro": {
"recall": 0.8457446808510638,
"f1_score": 0.8502673796791442,
"precision": 0.8548387096774194
},
"nuclei_other": {
"FN": 2,
"FP": 9,
"TP": 3,
"recall": 0.6,
"f1_score": 0.35294117647058826,
"precision": 0.25
},
"nuclei_tumor": {
"FN": 95,
"FP": 79,
"TP": 592,
"recall": 0.8617176128093159,
"f1_score": 0.8718703976435935,
"precision": 0.8822652757078987
},
"nuclei_lymphocyte": {
"FN": 19,
"FP": 20,
"TP": 41,
"recall": 0.6833333333333333,
"f1_score": 0.6776859504132232,
"precision": 0.6721311475409836
}
},
"tissue_metrics": {
"average_dice": 0.7997920747101211,
"tissue_tumor": 0.9989603689592379,
"tissue_stroma": 4.591368206651202e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_003.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5814814814814815
},
"micro": {
"recall": 0.8237410071942446,
"f1_score": 0.8419117647058824,
"precision": 0.8609022556390977
},
"nuclei_other": {
"FN": 20,
"FP": 13,
"TP": 11,
"recall": 0.3548387096774194,
"f1_score": 0.39999999999999997,
"precision": 0.4583333333333333
},
"nuclei_tumor": {
"FN": 27,
"FP": 21,
"TP": 216,
"recall": 0.8888888888888888,
"f1_score": 0.8999999999999999,
"precision": 0.9113924050632911
},
"nuclei_lymphocyte": {
"FN": 2,
"FP": 3,
"TP": 2,
"recall": 0.5,
"f1_score": 0.4444444444444445,
"precision": 0.4
}
},
"tissue_metrics": {
"average_dice": 0.7994459106101922,
"tissue_tumor": 0.9972295513250374,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.725923366023605e-09
}
},
{
"filename": "final_test_set_metastatic_roi_004.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.47097804519646774
},
"micro": {
"recall": 0.6958904109589041,
"f1_score": 0.748159057437408,
"precision": 0.8089171974522293
},
"nuclei_other": {
"FN": 77,
"FP": 49,
"TP": 14,
"recall": 0.15384615384615385,
"f1_score": 0.18181818181818185,
"precision": 0.2222222222222222
},
"nuclei_tumor": {
"FN": 100,
"FP": 55,
"TP": 476,
"recall": 0.8263888888888888,
"f1_score": 0.8599819331526648,
"precision": 0.896421845574388
},
"nuclei_lymphocyte": {
"FN": 45,
"FP": 16,
"TP": 18,
"recall": 0.2857142857142857,
"f1_score": 0.37113402061855666,
"precision": 0.5294117647058824
}
},
"tissue_metrics": {
"average_dice": 0.7953845478172837,
"tissue_tumor": 0.9546609298512911,
"tissue_stroma": 0.022261809235127338,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_005.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7686398085849664
},
"micro": {
"recall": 0.7689822294022617,
"f1_score": 0.7953216374269005,
"precision": 0.8235294117647058
},
"nuclei_other": {
"FN": 57,
"FP": 48,
"TP": 93,
"recall": 0.62,
"f1_score": 0.6391752577319586,
"precision": 0.6595744680851063
},
"nuclei_tumor": {
"FN": 49,
"FP": 26,
"TP": 135,
"recall": 0.7336956521739131,
"f1_score": 0.7826086956521741,
"precision": 0.8385093167701864
},
"nuclei_lymphocyte": {
"FN": 37,
"FP": 28,
"TP": 248,
"recall": 0.8701754385964913,
"f1_score": 0.8841354723707664,
"precision": 0.8985507246376812
}
},
"tissue_metrics": {
"average_dice": 0.7768934950008726,
"tissue_tumor": 0.9407789764537613,
"tissue_stroma": 0.9436884740407983,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.4509803320838156e-08
}
},
{
"filename": "final_test_set_metastatic_roi_006.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5975642500958958
},
"micro": {
"recall": 0.8534351145038168,
"f1_score": 0.8880063542494043,
"precision": 0.9254966887417219
},
"nuclei_other": {
"FN": 5,
"FP": 1,
"TP": 1,
"recall": 0.16666666666666666,
"f1_score": 0.25,
"precision": 0.5
},
"nuclei_tumor": {
"FN": 71,
"FP": 40,
"TP": 537,
"recall": 0.8832236842105263,
"f1_score": 0.9063291139240507,
"precision": 0.9306759098786829
},
"nuclei_lymphocyte": {
"FN": 20,
"FP": 4,
"TP": 21,
"recall": 0.5121951219512195,
"f1_score": 0.6363636363636365,
"precision": 0.84
}
},
"tissue_metrics": {
"average_dice": 1.0,
"tissue_tumor": 1.0,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_007.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4395078101974654
},
"micro": {
"recall": 0.8646616541353384,
"f1_score": 0.8812260536398469,
"precision": 0.8984375
},
"nuclei_other": {
"FN": 3,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_tumor": {
"FN": 37,
"FP": 37,
"TP": 340,
"recall": 0.9018567639257294,
"f1_score": 0.9018567639257294,
"precision": 0.9018567639257294
},
"nuclei_lymphocyte": {
"FN": 14,
"FP": 0,
"TP": 5,
"recall": 0.2631578947368421,
"f1_score": 0.4166666666666667,
"precision": 1.0
}
},
"tissue_metrics": {
"average_dice": 1.0,
"tissue_tumor": 1.0,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_008.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7692693026056888
},
"micro": {
"recall": 0.7992202729044834,
"f1_score": 0.8350305498981669,
"precision": 0.8742004264392325
},
"nuclei_other": {
"FN": 16,
"FP": 26,
"TP": 101,
"recall": 0.8632478632478633,
"f1_score": 0.8278688524590164,
"precision": 0.7952755905511811
},
"nuclei_tumor": {
"FN": 81,
"FP": 31,
"TP": 302,
"recall": 0.7885117493472585,
"f1_score": 0.8435754189944135,
"precision": 0.9069069069069069
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 2,
"TP": 7,
"recall": 0.5384615384615384,
"f1_score": 0.6363636363636364,
"precision": 0.7777777777777778
}
},
"tissue_metrics": {
"average_dice": 0.8973499308415059,
"tissue_tumor": 0.9660870517015947,
"tissue_stroma": 0.6384392285722336,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.8822233739337013,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_009.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6086024441747969
},
"micro": {
"recall": 0.7688564476885644,
"f1_score": 0.7623642943305187,
"precision": 0.7559808612440191
},
"nuclei_other": {
"FN": 3,
"FP": 28,
"TP": 6,
"recall": 0.6666666666666666,
"f1_score": 0.27906976744186046,
"precision": 0.17647058823529413
},
"nuclei_tumor": {
"FN": 31,
"FP": 66,
"TP": 217,
"recall": 0.875,
"f1_score": 0.8173258003766478,
"precision": 0.7667844522968198
},
"nuclei_lymphocyte": {
"FN": 61,
"FP": 8,
"TP": 93,
"recall": 0.6038961038961039,
"f1_score": 0.7294117647058824,
"precision": 0.9207920792079208
}
},
"tissue_metrics": {
"average_dice": 0.6519126566547053,
"tissue_tumor": 0.9792791618184582,
"tissue_stroma": 0.28028411756401755,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.891050568517313e-09
}
},
{
"filename": "final_test_set_metastatic_roi_010.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4372662743603855
},
"micro": {
"recall": 0.7695852534562212,
"f1_score": 0.7308533916849015,
"precision": 0.6958333333333333
},
"nuclei_other": {
"FN": 3,
"FP": 30,
"TP": 3,
"recall": 0.5,
"f1_score": 0.15384615384615385,
"precision": 0.09090909090909091
},
"nuclei_tumor": {
"FN": 38,
"FP": 37,
"TP": 160,
"recall": 0.8080808080808081,
"f1_score": 0.8101265822784809,
"precision": 0.8121827411167513
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 6,
"TP": 4,
"recall": 0.3076923076923077,
"f1_score": 0.34782608695652173,
"precision": 0.4
}
},
"tissue_metrics": {
"average_dice": 0.5972406711278357,
"tissue_tumor": 0.986203355525556,
"tissue_stroma": 5.746333838680508e-11,
"tissue_necrosis": 5.61589522954321e-11,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_011.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6208696167288666
},
"micro": {
"recall": 0.7453703703703703,
"f1_score": 0.7576470588235295,
"precision": 0.7703349282296651
},
"nuclei_other": {
"FN": 17,
"FP": 5,
"TP": 6,
"recall": 0.2608695652173913,
"f1_score": 0.3529411764705882,
"precision": 0.5454545454545454
},
"nuclei_tumor": {
"FN": 22,
"FP": 41,
"TP": 134,
"recall": 0.8589743589743589,
"f1_score": 0.8096676737160121,
"precision": 0.7657142857142857
},
"nuclei_lymphocyte": {
"FN": 16,
"FP": 2,
"TP": 21,
"recall": 0.5675675675675675,
"f1_score": 0.6999999999999998,
"precision": 0.9130434782608695
}
},
"tissue_metrics": {
"average_dice": 0.6472598471026243,
"tissue_tumor": 0.9456317690276175,
"tissue_stroma": 0.29066746012822464,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 6.3572790441368155e-09
}
},
{
"filename": "final_test_set_metastatic_roi_012.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6208269719780388
},
"micro": {
"recall": 0.6544715447154471,
"f1_score": 0.6917293233082706,
"precision": 0.7334851936218679
},
"nuclei_other": {
"FN": 7,
"FP": 96,
"TP": 25,
"recall": 0.78125,
"f1_score": 0.32679738562091504,
"precision": 0.2066115702479339
},
"nuclei_tumor": {
"FN": 48,
"FP": 19,
"TP": 130,
"recall": 0.7303370786516854,
"f1_score": 0.7951070336391437,
"precision": 0.87248322147651
},
"nuclei_lymphocyte": {
"FN": 115,
"FP": 2,
"TP": 167,
"recall": 0.5921985815602837,
"f1_score": 0.7405764966740578,
"precision": 0.9881656804733728
}
},
"tissue_metrics": {
"average_dice": 0.7828999561367037,
"tissue_tumor": 0.9606390591344686,
"tissue_stroma": 0.9538607192347708,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.314279096703821e-09
}
},
{
"filename": "final_test_set_metastatic_roi_013.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3883357340310982
},
"micro": {
"recall": 0.33826247689463956,
"f1_score": 0.3522617901828682,
"precision": 0.3674698795180723
},
"nuclei_other": {
"FN": 308,
"FP": 13,
"TP": 66,
"recall": 0.17647058823529413,
"f1_score": 0.2913907284768212,
"precision": 0.8354430379746836
},
"nuclei_tumor": {
"FN": 9,
"FP": 290,
"TP": 91,
"recall": 0.91,
"f1_score": 0.3783783783783784,
"precision": 0.2388451443569554
},
"nuclei_lymphocyte": {
"FN": 41,
"FP": 12,
"TP": 26,
"recall": 0.3880597014925373,
"f1_score": 0.4952380952380952,
"precision": 0.6842105263157895
}
},
"tissue_metrics": {
"average_dice": 0.7897573973797162,
"tissue_tumor": 0.532756399310797,
"tissue_stroma": 0.416030587587784,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_014.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7966045725820607
},
"micro": {
"recall": 0.8566666666666667,
"f1_score": 0.8524046434494196,
"precision": 0.8481848184818482
},
"nuclei_other": {
"FN": 8,
"FP": 20,
"TP": 22,
"recall": 0.7333333333333333,
"f1_score": 0.611111111111111,
"precision": 0.5238095238095238
},
"nuclei_tumor": {
"FN": 30,
"FP": 12,
"TP": 139,
"recall": 0.8224852071005917,
"f1_score": 0.86875,
"precision": 0.9205298013245033
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 14,
"TP": 96,
"recall": 0.9504950495049505,
"f1_score": 0.909952606635071,
"precision": 0.8727272727272727
}
},
"tissue_metrics": {
"average_dice": 0.928739195622709,
"tissue_tumor": 0.9219094937907931,
"tissue_stroma": 0.7217864843227519,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_015.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6753426008084392
},
"micro": {
"recall": 0.8206686930091185,
"f1_score": 0.8320493066255777,
"precision": 0.84375
},
"nuclei_other": {
"FN": 5,
"FP": 25,
"TP": 6,
"recall": 0.5454545454545454,
"f1_score": 0.2857142857142857,
"precision": 0.1935483870967742
},
"nuclei_tumor": {
"FN": 44,
"FP": 16,
"TP": 200,
"recall": 0.819672131147541,
"f1_score": 0.8695652173913043,
"precision": 0.9259259259259259
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 9,
"TP": 64,
"recall": 0.8648648648648649,
"f1_score": 0.870748299319728,
"precision": 0.8767123287671232
}
},
"tissue_metrics": {
"average_dice": 0.7600314459550407,
"tissue_tumor": 0.9719102310261937,
"tissue_stroma": 0.828246981297003,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.745200667623025e-08
}
},
{
"filename": "final_test_set_metastatic_roi_016.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6535632578357355
},
"micro": {
"recall": 0.8194726166328601,
"f1_score": 0.8120603015075377,
"precision": 0.8047808764940239
},
"nuclei_other": {
"FN": 33,
"FP": 13,
"TP": 17,
"recall": 0.34,
"f1_score": 0.425,
"precision": 0.5666666666666667
},
"nuclei_tumor": {
"FN": 48,
"FP": 78,
"TP": 371,
"recall": 0.8854415274463007,
"f1_score": 0.8548387096774194,
"precision": 0.8262806236080178
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 7,
"TP": 16,
"recall": 0.6666666666666666,
"f1_score": 0.6808510638297872,
"precision": 0.6956521739130435
}
},
"tissue_metrics": {
"average_dice": 0.8795343862771616,
"tissue_tumor": 0.9730319040603246,
"tissue_stroma": 0.4246400273254835,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_017.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5100332176632986
},
"micro": {
"recall": 0.6805194805194805,
"f1_score": 0.6796368352788585,
"precision": 0.6787564766839378
},
"nuclei_other": {
"FN": 2,
"FP": 75,
"TP": 2,
"recall": 0.5,
"f1_score": 0.04938271604938272,
"precision": 0.025974025974025976
},
"nuclei_tumor": {
"FN": 106,
"FP": 41,
"TP": 230,
"recall": 0.6845238095238095,
"f1_score": 0.757825370675453,
"precision": 0.8487084870848709
},
"nuclei_lymphocyte": {
"FN": 15,
"FP": 8,
"TP": 30,
"recall": 0.6666666666666666,
"f1_score": 0.7228915662650601,
"precision": 0.7894736842105263
}
},
"tissue_metrics": {
"average_dice": 0.7657913795875988,
"tissue_tumor": 0.8289568979053475,
"tissue_stroma": 3.2646558561963284e-11,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_018.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7210712984510109
},
"micro": {
"recall": 0.7324561403508771,
"f1_score": 0.7828125,
"precision": 0.8406040268456376
},
"nuclei_other": {
"FN": 33,
"FP": 46,
"TP": 44,
"recall": 0.5714285714285714,
"f1_score": 0.5269461077844311,
"precision": 0.4888888888888889
},
"nuclei_tumor": {
"FN": 89,
"FP": 32,
"TP": 294,
"recall": 0.7676240208877284,
"f1_score": 0.8293370944992948,
"precision": 0.901840490797546
},
"nuclei_lymphocyte": {
"FN": 61,
"FP": 17,
"TP": 163,
"recall": 0.7276785714285714,
"f1_score": 0.8069306930693069,
"precision": 0.9055555555555556
}
},
"tissue_metrics": {
"average_dice": 0.7811428484321951,
"tissue_tumor": 0.9719482000013822,
"tissue_stroma": 0.9337660406776729,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.48192056686141e-09
}
},
{
"filename": "final_test_set_metastatic_roi_019.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6802418862984747
},
"micro": {
"recall": 0.756578947368421,
"f1_score": 0.7504078303425775,
"precision": 0.7443365695792881
},
"nuclei_other": {
"FN": 15,
"FP": 11,
"TP": 14,
"recall": 0.4827586206896552,
"f1_score": 0.5185185185185185,
"precision": 0.56
},
"nuclei_tumor": {
"FN": 22,
"FP": 63,
"TP": 158,
"recall": 0.8777777777777778,
"f1_score": 0.7880299251870323,
"precision": 0.7149321266968326
},
"nuclei_lymphocyte": {
"FN": 37,
"FP": 5,
"TP": 58,
"recall": 0.6105263157894737,
"f1_score": 0.7341772151898734,
"precision": 0.9206349206349206
}
},
"tissue_metrics": {
"average_dice": 0.8009346195203934,
"tissue_tumor": 0.941996153803603,
"tissue_stroma": 0.06267694379836378,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_020.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6060501343520212
},
"micro": {
"recall": 0.636849132176235,
"f1_score": 0.7221801665404997,
"precision": 0.833916083916084
},
"nuclei_other": {
"FN": 8,
"FP": 68,
"TP": 15,
"recall": 0.6521739130434783,
"f1_score": 0.2830188679245283,
"precision": 0.18072289156626506
},
"nuclei_tumor": {
"FN": 65,
"FP": 19,
"TP": 156,
"recall": 0.7058823529411765,
"f1_score": 0.7878787878787878,
"precision": 0.8914285714285715
},
"nuclei_lymphocyte": {
"FN": 199,
"FP": 8,
"TP": 306,
"recall": 0.6059405940594059,
"f1_score": 0.7472527472527473,
"precision": 0.9745222929936306
}
},
"tissue_metrics": {
"average_dice": 0.8659485396281174,
"tissue_tumor": 0.9391479423241492,
"tissue_stroma": 0.9080066657085599,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.48258809010787757
}
},
{
"filename": "final_test_set_metastatic_roi_021.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7121065729761381
},
"micro": {
"recall": 0.7615384615384615,
"f1_score": 0.7664516129032258,
"precision": 0.7714285714285715
},
"nuclei_other": {
"FN": 30,
"FP": 21,
"TP": 32,
"recall": 0.5161290322580645,
"f1_score": 0.5565217391304349,
"precision": 0.6037735849056604
},
"nuclei_tumor": {
"FN": 35,
"FP": 56,
"TP": 202,
"recall": 0.8523206751054853,
"f1_score": 0.8161616161616162,
"precision": 0.7829457364341085
},
"nuclei_lymphocyte": {
"FN": 28,
"FP": 11,
"TP": 63,
"recall": 0.6923076923076923,
"f1_score": 0.7636363636363636,
"precision": 0.8513513513513513
}
},
"tissue_metrics": {
"average_dice": 0.9273121889986647,
"tissue_tumor": 0.941553156944267,
"tissue_stroma": 0.6950077880490565,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_022.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6285628562856286
},
"micro": {
"recall": 0.8168316831683168,
"f1_score": 0.8815672306322351,
"precision": 0.9574468085106383
},
"nuclei_other": {
"FN": 3,
"FP": 1,
"TP": 1,
"recall": 0.25,
"f1_score": 0.3333333333333333,
"precision": 0.5
},
"nuclei_tumor": {
"FN": 108,
"FP": 19,
"TP": 492,
"recall": 0.82,
"f1_score": 0.8856885688568856,
"precision": 0.9628180039138943
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 2,
"TP": 2,
"recall": 1.0,
"f1_score": 0.6666666666666666,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 1.0,
"tissue_tumor": 1.0,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_023.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5222769784625455
},
"micro": {
"recall": 0.6922043010752689,
"f1_score": 0.7680835197613722,
"precision": 0.8626465661641541
},
"nuclei_other": {
"FN": 8,
"FP": 6,
"TP": 5,
"recall": 0.38461538461538464,
"f1_score": 0.41666666666666663,
"precision": 0.45454545454545453
},
"nuclei_tumor": {
"FN": 203,
"FP": 58,
"TP": 500,
"recall": 0.7112375533428165,
"f1_score": 0.7930214115781127,
"precision": 0.8960573476702509
},
"nuclei_lymphocyte": {
"FN": 18,
"FP": 18,
"TP": 10,
"recall": 0.35714285714285715,
"f1_score": 0.35714285714285715,
"precision": 0.35714285714285715
}
},
"tissue_metrics": {
"average_dice": 0.8843759453333341,
"tissue_tumor": 0.9677555217092565,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.4541242049574136
}
},
{
"filename": "final_test_set_metastatic_roi_024.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7607941982154797
},
"micro": {
"recall": 0.7647058823529411,
"f1_score": 0.7766233766233765,
"precision": 0.7889182058047494
},
"nuclei_other": {
"FN": 51,
"FP": 105,
"TP": 133,
"recall": 0.7228260869565217,
"f1_score": 0.6303317535545023,
"precision": 0.5588235294117647
},
"nuclei_tumor": {
"FN": 44,
"FP": 15,
"TP": 128,
"recall": 0.7441860465116279,
"f1_score": 0.8126984126984127,
"precision": 0.8951048951048951
},
"nuclei_lymphocyte": {
"FN": 89,
"FP": 40,
"TP": 337,
"recall": 0.7910798122065728,
"f1_score": 0.8393524283935242,
"precision": 0.8938992042440318
}
},
"tissue_metrics": {
"average_dice": 0.8137773932598773,
"tissue_tumor": 0.83523334993451,
"tissue_stroma": 0.8990337217329193,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.3346198946319572
}
},
{
"filename": "final_test_set_metastatic_roi_025.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7901866267979584
},
"micro": {
"recall": 0.8274231678486997,
"f1_score": 0.8177570093457944,
"precision": 0.8083140877598153
},
"nuclei_other": {
"FN": 18,
"FP": 37,
"TP": 54,
"recall": 0.75,
"f1_score": 0.6625766871165644,
"precision": 0.5934065934065934
},
"nuclei_tumor": {
"FN": 32,
"FP": 20,
"TP": 142,
"recall": 0.8160919540229885,
"f1_score": 0.8452380952380952,
"precision": 0.8765432098765432
},
"nuclei_lymphocyte": {
"FN": 23,
"FP": 26,
"TP": 154,
"recall": 0.8700564971751412,
"f1_score": 0.8627450980392157,
"precision": 0.8555555555555555
}
},
"tissue_metrics": {
"average_dice": 0.7550007010414372,
"tissue_tumor": 0.876070066763026,
"tissue_stroma": 0.6961840499321224,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.20274938851203778
}
},
{
"filename": "final_test_set_metastatic_roi_026.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5930593180094551
},
"micro": {
"recall": 0.6944444444444444,
"f1_score": 0.7079646017699115,
"precision": 0.7220216606498195
},
"nuclei_other": {
"FN": 32,
"FP": 25,
"TP": 9,
"recall": 0.21951219512195122,
"f1_score": 0.24,
"precision": 0.2647058823529412
},
"nuclei_tumor": {
"FN": 25,
"FP": 50,
"TP": 142,
"recall": 0.8502994011976048,
"f1_score": 0.7910863509749304,
"precision": 0.7395833333333334
},
"nuclei_lymphocyte": {
"FN": 31,
"FP": 2,
"TP": 49,
"recall": 0.6125,
"f1_score": 0.7480916030534351,
"precision": 0.9607843137254902
}
},
"tissue_metrics": {
"average_dice": 0.6194944869530273,
"tissue_tumor": 0.9811755060385019,
"tissue_stroma": 0.11629692851614826,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 2.1048643410501454e-10
}
},
{
"filename": "final_test_set_metastatic_roi_027.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8463647405865001
},
"micro": {
"recall": 0.9040247678018576,
"f1_score": 0.884848484848485,
"precision": 0.8664688427299704
},
"nuclei_other": {
"FN": 1,
"FP": 1,
"TP": 4,
"recall": 0.8,
"f1_score": 0.8000000000000002,
"precision": 0.8
},
"nuclei_tumor": {
"FN": 25,
"FP": 36,
"TP": 252,
"recall": 0.9097472924187726,
"f1_score": 0.8920353982300885,
"precision": 0.875
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 8,
"TP": 36,
"recall": 0.8780487804878049,
"f1_score": 0.8470588235294119,
"precision": 0.8181818181818182
}
},
"tissue_metrics": {
"average_dice": 0.8631590936997295,
"tissue_tumor": 0.970158838422514,
"tissue_stroma": 0.34563663007613354,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_028.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5047981169654174
},
"micro": {
"recall": 0.946969696969697,
"f1_score": 0.9328358208955223,
"precision": 0.9191176470588235
},
"nuclei_other": {
"FN": 1,
"FP": 2,
"TP": 2,
"recall": 0.6666666666666666,
"f1_score": 0.5714285714285715,
"precision": 0.5
},
"nuclei_tumor": {
"FN": 13,
"FP": 17,
"TP": 248,
"recall": 0.9501915708812261,
"f1_score": 0.9429657794676807,
"precision": 0.9358490566037736
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 3,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7974782706451431,
"tissue_tumor": 0.9873913528427645,
"tissue_stroma": 3.8295102041781834e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_029.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6128729151984965
},
"micro": {
"recall": 0.8725212464589235,
"f1_score": 0.8496551724137931,
"precision": 0.8279569892473119
},
"nuclei_other": {
"FN": 25,
"FP": 7,
"TP": 6,
"recall": 0.1935483870967742,
"f1_score": 0.2727272727272727,
"precision": 0.46153846153846156
},
"nuclei_tumor": {
"FN": 17,
"FP": 48,
"TP": 290,
"recall": 0.9446254071661238,
"f1_score": 0.8992248062015504,
"precision": 0.8579881656804734
},
"nuclei_lymphocyte": {
"FN": 3,
"FP": 9,
"TP": 12,
"recall": 0.8,
"f1_score": 0.6666666666666666,
"precision": 0.5714285714285714
}
},
"tissue_metrics": {
"average_dice": 0.799741794281429,
"tissue_tumor": 0.9987089677089204,
"tissue_stroma": 3.698224838394139e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_030.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.820707752094032
},
"micro": {
"recall": 0.8549618320610687,
"f1_score": 0.8915422885572138,
"precision": 0.9313929313929314
},
"nuclei_other": {
"FN": 12,
"FP": 16,
"TP": 28,
"recall": 0.7,
"f1_score": 0.6666666666666666,
"precision": 0.6363636363636364
},
"nuclei_tumor": {
"FN": 43,
"FP": 9,
"TP": 323,
"recall": 0.8825136612021858,
"f1_score": 0.9255014326647564,
"precision": 0.9728915662650602
},
"nuclei_lymphocyte": {
"FN": 21,
"FP": 8,
"TP": 97,
"recall": 0.8220338983050848,
"f1_score": 0.8699551569506727,
"precision": 0.9238095238095239
}
},
"tissue_metrics": {
"average_dice": 0.9090348961092236,
"tissue_tumor": 0.9789204123134203,
"tissue_stroma": 0.8495677728018772,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.71668629543082
}
},
{
"filename": "final_test_set_metastatic_roi_031.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.693371296592035
},
"micro": {
"recall": 0.7728643216080402,
"f1_score": 0.7973043027475376,
"precision": 0.8233404710920771
},
"nuclei_other": {
"FN": 76,
"FP": 39,
"TP": 40,
"recall": 0.3448275862068966,
"f1_score": 0.41025641025641024,
"precision": 0.5063291139240507
},
"nuclei_tumor": {
"FN": 63,
"FP": 65,
"TP": 271,
"recall": 0.811377245508982,
"f1_score": 0.8089552238805969,
"precision": 0.8065476190476191
},
"nuclei_lymphocyte": {
"FN": 87,
"FP": 61,
"TP": 458,
"recall": 0.8403669724770643,
"f1_score": 0.8609022556390978,
"precision": 0.882466281310212
}
},
"tissue_metrics": {
"average_dice": 0.9796487739127262,
"tissue_tumor": 0.9545243715507947,
"tissue_stroma": 0.9437194980128365,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_032.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7414277807118127
},
"micro": {
"recall": 0.7944535073409462,
"f1_score": 0.8150627615062762,
"precision": 0.8367697594501718
},
"nuclei_other": {
"FN": 11,
"FP": 46,
"TP": 32,
"recall": 0.7441860465116279,
"f1_score": 0.5289256198347108,
"precision": 0.41025641025641024
},
"nuclei_tumor": {
"FN": 35,
"FP": 38,
"TP": 211,
"recall": 0.8577235772357723,
"f1_score": 0.8525252525252525,
"precision": 0.8473895582329317
},
"nuclei_lymphocyte": {
"FN": 80,
"FP": 11,
"TP": 244,
"recall": 0.7530864197530864,
"f1_score": 0.842832469775475,
"precision": 0.9568627450980393
}
},
"tissue_metrics": {
"average_dice": 0.7728384792508184,
"tissue_tumor": 0.9579735757899449,
"tissue_stroma": 0.9062188033993009,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.7064846125173276e-08
}
},
{
"filename": "final_test_set_metastatic_roi_033.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6570652608035786
},
"micro": {
"recall": 0.8420074349442379,
"f1_score": 0.889106967615309,
"precision": 0.9417879417879418
},
"nuclei_other": {
"FN": 11,
"FP": 3,
"TP": 6,
"recall": 0.35294117647058826,
"f1_score": 0.46153846153846156,
"precision": 0.6666666666666666
},
"nuclei_tumor": {
"FN": 65,
"FP": 22,
"TP": 438,
"recall": 0.8707753479125249,
"f1_score": 0.9096573208722742,
"precision": 0.9521739130434783
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 3,
"TP": 9,
"recall": 0.5,
"f1_score": 0.6,
"precision": 0.75
}
},
"tissue_metrics": {
"average_dice": 0.9050506895889356,
"tissue_tumor": 0.9932311073982152,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5320223405464626
}
},
{
"filename": "final_test_set_metastatic_roi_034.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4275177114160165
},
"micro": {
"recall": 0.7271428571428571,
"f1_score": 0.7842835130970723,
"precision": 0.8511705685618729
},
"nuclei_other": {
"FN": 10,
"FP": 14,
"TP": 4,
"recall": 0.2857142857142857,
"f1_score": 0.25,
"precision": 0.2222222222222222
},
"nuclei_tumor": {
"FN": 173,
"FP": 62,
"TP": 502,
"recall": 0.7437037037037038,
"f1_score": 0.8103309120258273,
"precision": 0.8900709219858156
},
"nuclei_lymphocyte": {
"FN": 8,
"FP": 13,
"TP": 3,
"recall": 0.2727272727272727,
"f1_score": 0.2222222222222222,
"precision": 0.1875
}
},
"tissue_metrics": {
"average_dice": 0.5712146475829283,
"tissue_tumor": 0.9458516549384902,
"tissue_stroma": 6.26370184386865e-10,
"tissue_necrosis": 1.5170593319603352e-10,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.9102215821980749
}
},
{
"filename": "final_test_set_metastatic_roi_035.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5398242557730059
},
"micro": {
"recall": 0.7171428571428572,
"f1_score": 0.7060478199718706,
"precision": 0.6952908587257618
},
"nuclei_other": {
"FN": 15,
"FP": 70,
"TP": 48,
"recall": 0.7619047619047619,
"f1_score": 0.5303867403314917,
"precision": 0.4067796610169492
},
"nuclei_tumor": {
"FN": 38,
"FP": 39,
"TP": 195,
"recall": 0.8369098712446352,
"f1_score": 0.8351177730192721,
"precision": 0.8333333333333334
},
"nuclei_lymphocyte": {
"FN": 46,
"FP": 1,
"TP": 8,
"recall": 0.14814814814814814,
"f1_score": 0.25396825396825395,
"precision": 0.8888888888888888
}
},
"tissue_metrics": {
"average_dice": 0.9873162216430835,
"tissue_tumor": 0.9774077879099525,
"tissue_stroma": 0.959173320305465,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_036.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5879222656184994
},
"micro": {
"recall": 0.7630208333333334,
"f1_score": 0.7417721518987341,
"precision": 0.7216748768472906
},
"nuclei_other": {
"FN": 7,
"FP": 54,
"TP": 6,
"recall": 0.46153846153846156,
"f1_score": 0.16438356164383564,
"precision": 0.1
},
"nuclei_tumor": {
"FN": 49,
"FP": 31,
"TP": 134,
"recall": 0.73224043715847,
"f1_score": 0.7701149425287357,
"precision": 0.8121212121212121
},
"nuclei_lymphocyte": {
"FN": 35,
"FP": 28,
"TP": 153,
"recall": 0.8138297872340425,
"f1_score": 0.8292682926829269,
"precision": 0.8453038674033149
}
},
"tissue_metrics": {
"average_dice": 0.9615682520107007,
"tissue_tumor": 0.9538678356161777,
"tissue_stroma": 0.8539734244373255,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_037.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.31121519646109813
},
"micro": {
"recall": 0.9157733537519143,
"f1_score": 0.9192928516525749,
"precision": 0.9228395061728395
},
"nuclei_other": {
"FN": 9,
"FP": 0,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0
},
"nuclei_tumor": {
"FN": 36,
"FP": 49,
"TP": 598,
"recall": 0.943217665615142,
"f1_score": 0.9336455893832943,
"precision": 0.9242658423493045
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 1,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.5989625816150127,
"tissue_tumor": 0.9948129011230495,
"tissue_stroma": 5.854800902489457e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0972130775760225e-09
}
},
{
"filename": "final_test_set_metastatic_roi_038.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5256565656565657
},
"micro": {
"recall": 0.8222698072805139,
"f1_score": 0.8458149779735682,
"precision": 0.8707482993197279
},
"nuclei_other": {
"FN": 21,
"FP": 3,
"TP": 6,
"recall": 0.2222222222222222,
"f1_score": 0.3333333333333333,
"precision": 0.6666666666666666
},
"nuclei_tumor": {
"FN": 50,
"FP": 52,
"TP": 374,
"recall": 0.8820754716981132,
"f1_score": 0.88,
"precision": 0.8779342723004695
},
"nuclei_lymphocyte": {
"FN": 12,
"FP": 2,
"TP": 4,
"recall": 0.25,
"f1_score": 0.36363636363636365,
"precision": 0.6666666666666666
}
},
"tissue_metrics": {
"average_dice": 1.0,
"tissue_tumor": 1.0,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_039.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.548272920125438
},
"micro": {
"recall": 0.6078799249530957,
"f1_score": 0.6101694915254238,
"precision": 0.6124763705103969
},
"nuclei_other": {
"FN": 142,
"FP": 24,
"TP": 21,
"recall": 0.12883435582822086,
"f1_score": 0.20192307692307693,
"precision": 0.4666666666666667
},
"nuclei_tumor": {
"FN": 27,
"FP": 153,
"TP": 198,
"recall": 0.88,
"f1_score": 0.6875,
"precision": 0.5641025641025641
},
"nuclei_lymphocyte": {
"FN": 40,
"FP": 28,
"TP": 105,
"recall": 0.7241379310344828,
"f1_score": 0.7553956834532374,
"precision": 0.7894736842105263
}
},
"tissue_metrics": {
"average_dice": 0.6991946114304763,
"tissue_tumor": 0.4959730571381526,
"tissue_stroma": 1.422892056542559e-11,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_040.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7166916378954681
},
"micro": {
"recall": 0.7638603696098563,
"f1_score": 0.7957219251336899,
"precision": 0.8303571428571429
},
"nuclei_other": {
"FN": 27,
"FP": 13,
"TP": 22,
"recall": 0.4489795918367347,
"f1_score": 0.5238095238095237,
"precision": 0.6285714285714286
},
"nuclei_tumor": {
"FN": 83,
"FP": 44,
"TP": 302,
"recall": 0.7844155844155845,
"f1_score": 0.8262653898768809,
"precision": 0.8728323699421965
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 19,
"TP": 48,
"recall": 0.9056603773584906,
"f1_score": 0.7999999999999999,
"precision": 0.7164179104477612
}
},
"tissue_metrics": {
"average_dice": 0.8876976604445304,
"tissue_tumor": 0.9706992778688476,
"tissue_stroma": 0.539254228253404,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.9285347961004004
}
},
{
"filename": "final_test_set_metastatic_roi_041.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7497803564864376
},
"micro": {
"recall": 0.7978142076502732,
"f1_score": 0.7967257844474761,
"precision": 0.7956403269754768
},
"nuclei_other": {
"FN": 18,
"FP": 15,
"TP": 34,
"recall": 0.6538461538461539,
"f1_score": 0.6732673267326732,
"precision": 0.6938775510204082
},
"nuclei_tumor": {
"FN": 45,
"FP": 16,
"TP": 189,
"recall": 0.8076923076923077,
"f1_score": 0.8610478359908883,
"precision": 0.9219512195121952
},
"nuclei_lymphocyte": {
"FN": 11,
"FP": 44,
"TP": 69,
"recall": 0.8625,
"f1_score": 0.7150259067357512,
"precision": 0.6106194690265486
}
},
"tissue_metrics": {
"average_dice": 0.8515837476946077,
"tissue_tumor": 0.9299232698948001,
"tissue_stroma": 0.7164468849329406,
"tissue_necrosis": 0.6115485836452977,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_042.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5290341241079155
},
"micro": {
"recall": 0.521505376344086,
"f1_score": 0.5464788732394366,
"precision": 0.5739644970414202
},
"nuclei_other": {
"FN": 163,
"FP": 34,
"TP": 50,
"recall": 0.2347417840375587,
"f1_score": 0.3367003367003367,
"precision": 0.5952380952380952
},
"nuclei_tumor": {
"FN": 16,
"FP": 163,
"TP": 98,
"recall": 0.8596491228070176,
"f1_score": 0.5226666666666666,
"precision": 0.37547892720306514
},
"nuclei_lymphocyte": {
"FN": 88,
"FP": 19,
"TP": 143,
"recall": 0.6190476190476191,
"f1_score": 0.7277353689567432,
"precision": 0.8827160493827161
}
},
"tissue_metrics": {
"average_dice": 0.5268564441570776,
"tissue_tumor": 0.4297314347962631,
"tissue_stroma": 1.4017086828647884e-11,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.20455078597510765
}
},
{
"filename": "final_test_set_metastatic_roi_043.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4848571022323333
},
"micro": {
"recall": 0.7993079584775087,
"f1_score": 0.7951807228915663,
"precision": 0.791095890410959
},
"nuclei_other": {
"FN": 25,
"FP": 2,
"TP": 0,
"recall": 0.0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_tumor": {
"FN": 32,
"FP": 55,
"TP": 227,
"recall": 0.8764478764478765,
"f1_score": 0.8391866913123845,
"precision": 0.8049645390070922
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 4,
"TP": 4,
"recall": 0.8,
"f1_score": 0.6153846153846154,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.7906041287250273,
"tissue_tumor": 0.9530206435188686,
"tissue_stroma": 1.0626766698834588e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_044.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6159034701096687
},
"micro": {
"recall": 0.8838582677165354,
"f1_score": 0.8908730158730159,
"precision": 0.898
},
"nuclei_other": {
"FN": 14,
"FP": 8,
"TP": 3,
"recall": 0.17647058823529413,
"f1_score": 0.21428571428571427,
"precision": 0.2727272727272727
},
"nuclei_tumor": {
"FN": 40,
"FP": 30,
"TP": 424,
"recall": 0.9137931034482759,
"f1_score": 0.9237472766884532,
"precision": 0.933920704845815
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 13,
"TP": 22,
"recall": 0.8148148148148148,
"f1_score": 0.7096774193548386,
"precision": 0.6285714285714286
}
},
"tissue_metrics": {
"average_dice": 0.592468129878309,
"tissue_tumor": 0.962340647027296,
"tissue_stroma": 1.2460748640225696e-10,
"tissue_necrosis": 2.239641652318832e-09,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_metastatic_roi_045.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7367322672231794
},
"micro": {
"recall": 0.8394648829431438,
"f1_score": 0.8331950207468879,
"precision": 0.8270181219110379
},
"nuclei_other": {
"FN": 2,
"FP": 7,
"TP": 6,
"recall": 0.75,
"f1_score": 0.5714285714285714,
"precision": 0.46153846153846156
},
"nuclei_tumor": {
"FN": 26,
"FP": 89,
"TP": 363,
"recall": 0.9331619537275064,
"f1_score": 0.863258026159334,
"precision": 0.8030973451327433
},
"nuclei_lymphocyte": {
"FN": 68,
"FP": 9,
"TP": 133,
"recall": 0.6616915422885572,
"f1_score": 0.7755102040816326,
"precision": 0.9366197183098591
}
},
"tissue_metrics": {
"average_dice": 0.716528084856762,
"tissue_tumor": 0.9902412871760674,
"tissue_stroma": 1.5386982589033725e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5923991355690443
}
},
{
"filename": "final_test_set_metastatic_roi_046.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.2949693984176743
},
"micro": {
"recall": 0.16101694915254236,
"f1_score": 0.20708446866485014,
"precision": 0.2900763358778626
},
"nuclei_other": {
"FN": 194,
"FP": 1,
"TP": 33,
"recall": 0.14537444933920704,
"f1_score": 0.25287356321839083,
"precision": 0.9705882352941176
},
"nuclei_tumor": {
"FN": 2,
"FP": 91,
"TP": 3,
"recall": 0.6,
"f1_score": 0.0606060606060606,
"precision": 0.031914893617021274
},
"nuclei_lymphocyte": {
"FN": 2,
"FP": 1,
"TP": 2,
"recall": 0.5,
"f1_score": 0.5714285714285715,
"precision": 0.6666666666666666
}
},
"tissue_metrics": {
"average_dice": 0.5059995868434708,
"tissue_tumor": 1.6882908587206424e-11,
"tissue_stroma": 0.23066387295729898,
"tissue_necrosis": 0.7447711924633518,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5545628687798205
}
},
{
"filename": "final_test_set_metastatic_roi_047.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.593195847362514
},
"micro": {
"recall": 0.8897435897435897,
"f1_score": 0.8897435897435897,
"precision": 0.8897435897435897
},
"nuclei_other": {
"FN": 30,
"FP": 16,
"TP": 217,
"recall": 0.8785425101214575,
"f1_score": 0.9041666666666667,
"precision": 0.9313304721030042
},
"nuclei_tumor": {
"FN": 13,
"FP": 24,
"TP": 130,
"recall": 0.9090909090909091,
"f1_score": 0.8754208754208753,
"precision": 0.8441558441558441
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 3,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7681081127046241,
"tissue_tumor": 0.47525818841626344,
"tissue_stroma": 1.0,
"tissue_necrosis": 0.36528237510685746,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_001.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.3433801182404331
},
"micro": {
"recall": 0.45768566493955093,
"f1_score": 0.46247818499127397,
"precision": 0.4673721340388007
},
"nuclei_other": {
"FN": 188,
"FP": 20,
"TP": 35,
"recall": 0.15695067264573992,
"f1_score": 0.2517985611510791,
"precision": 0.6363636363636364
},
"nuclei_tumor": {
"FN": 0,
"FP": 277,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
},
"nuclei_lymphocyte": {
"FN": 126,
"FP": 5,
"TP": 230,
"recall": 0.6460674157303371,
"f1_score": 0.77834179357022,
"precision": 0.9787234042553191
}
},
"tissue_metrics": {
"average_dice": 0.5073412951190178,
"tissue_tumor": 9.798282752868711e-12,
"tissue_stroma": 1.0019809162614292e-11,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5367064755752711
}
},
{
"filename": "final_test_set_primary_roi_002.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7819246574414498
},
"micro": {
"recall": 0.8007662835249042,
"f1_score": 0.7992351816443595,
"precision": 0.7977099236641222
},
"nuclei_other": {
"FN": 31,
"FP": 30,
"TP": 143,
"recall": 0.8218390804597702,
"f1_score": 0.824207492795389,
"precision": 0.8265895953757225
},
"nuclei_tumor": {
"FN": 11,
"FP": 2,
"TP": 27,
"recall": 0.7105263157894737,
"f1_score": 0.8059701492537312,
"precision": 0.9310344827586207
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 21,
"TP": 39,
"recall": 0.7959183673469388,
"f1_score": 0.7155963302752293,
"precision": 0.65
}
},
"tissue_metrics": {
"average_dice": 0.779712022094549,
"tissue_tumor": 0.9127228772997577,
"tissue_stroma": 0.9858372320211795,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.1518083377657126e-09
}
},
{
"filename": "final_test_set_primary_roi_003.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7529860154984781
},
"micro": {
"recall": 0.7820121951219512,
"f1_score": 0.7996882307092753,
"precision": 0.8181818181818182
},
"nuclei_other": {
"FN": 58,
"FP": 81,
"TP": 196,
"recall": 0.7716535433070866,
"f1_score": 0.7382297551789078,
"precision": 0.7075812274368231
},
"nuclei_tumor": {
"FN": 41,
"FP": 11,
"TP": 44,
"recall": 0.5176470588235295,
"f1_score": 0.6285714285714286,
"precision": 0.8
},
"nuclei_lymphocyte": {
"FN": 44,
"FP": 22,
"TP": 273,
"recall": 0.861198738170347,
"f1_score": 0.892156862745098,
"precision": 0.9254237288135593
}
},
"tissue_metrics": {
"average_dice": 0.8651704386904354,
"tissue_tumor": 0.7132935299216127,
"tissue_stroma": 0.9345889117892081,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.8091254579494966,
"tissue_blood_vessel": 0.8688442937918597
}
},
{
"filename": "final_test_set_primary_roi_004.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5109649248175053
},
"micro": {
"recall": 0.5174825174825175,
"f1_score": 0.5381818181818181,
"precision": 0.5606060606060606
},
"nuclei_other": {
"FN": 22,
"FP": 111,
"TP": 24,
"recall": 0.5217391304347826,
"f1_score": 0.26519337016574585,
"precision": 0.17777777777777778
},
"nuclei_tumor": {
"FN": 166,
"FP": 17,
"TP": 93,
"recall": 0.3590733590733591,
"f1_score": 0.5040650406504066,
"precision": 0.8454545454545455
},
"nuclei_lymphocyte": {
"FN": 19,
"FP": 46,
"TP": 105,
"recall": 0.8467741935483871,
"f1_score": 0.7636363636363636,
"precision": 0.695364238410596
}
},
"tissue_metrics": {
"average_dice": 0.7254036263548187,
"tissue_tumor": 0.8960254960625406,
"tissue_stroma": 5.796328605125328e-11,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7309926356535899
}
},
{
"filename": "final_test_set_primary_roi_005.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8266124833195828
},
"micro": {
"recall": 0.8698481561822126,
"f1_score": 0.8901220865704773,
"precision": 0.9113636363636364
},
"nuclei_other": {
"FN": 9,
"FP": 26,
"TP": 58,
"recall": 0.8656716417910447,
"f1_score": 0.7682119205298013,
"precision": 0.6904761904761905
},
"nuclei_tumor": {
"FN": 40,
"FP": 6,
"TP": 311,
"recall": 0.886039886039886,
"f1_score": 0.9311377245508983,
"precision": 0.9810725552050473
},
"nuclei_lymphocyte": {
"FN": 11,
"FP": 7,
"TP": 32,
"recall": 0.7441860465116279,
"f1_score": 0.7804878048780488,
"precision": 0.8205128205128205
}
},
"tissue_metrics": {
"average_dice": 0.9352206849031195,
"tissue_tumor": 0.9746573562794075,
"tissue_stroma": 0.9438131748085218,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7576328934276682
}
},
{
"filename": "final_test_set_primary_roi_006.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6367108627725229
},
"micro": {
"recall": 0.6445725264169068,
"f1_score": 0.7081794195250659,
"precision": 0.7857142857142857
},
"nuclei_other": {
"FN": 31,
"FP": 152,
"TP": 77,
"recall": 0.7129629629629629,
"f1_score": 0.45697329376854595,
"precision": 0.33624454148471616
},
"nuclei_tumor": {
"FN": 61,
"FP": 15,
"TP": 79,
"recall": 0.5642857142857143,
"f1_score": 0.6752136752136753,
"precision": 0.8404255319148937
},
"nuclei_lymphocyte": {
"FN": 278,
"FP": 16,
"TP": 515,
"recall": 0.6494325346784363,
"f1_score": 0.7779456193353474,
"precision": 0.9698681732580038
}
},
"tissue_metrics": {
"average_dice": 0.9053467203005031,
"tissue_tumor": 0.9369069559278204,
"tissue_stroma": 0.9776483790525085,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6121782665221863
}
},
{
"filename": "final_test_set_primary_roi_007.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4741517491686779
},
"micro": {
"recall": 0.5891812865497076,
"f1_score": 0.6147978642257819,
"precision": 0.6427432216905901
},
"nuclei_other": {
"FN": 23,
"FP": 111,
"TP": 163,
"recall": 0.8763440860215054,
"f1_score": 0.7086956521739132,
"precision": 0.5948905109489051
},
"nuclei_tumor": {
"FN": 248,
"FP": 7,
"TP": 236,
"recall": 0.48760330578512395,
"f1_score": 0.6492434662998624,
"precision": 0.9711934156378601
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 106,
"TP": 4,
"recall": 0.2857142857142857,
"f1_score": 0.06451612903225805,
"precision": 0.03636363636363636
}
},
"tissue_metrics": {
"average_dice": 0.6424512920242456,
"tissue_tumor": 0.7221627011908943,
"tissue_stroma": 0.5637641171995382,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.9263296415762808,
"tissue_blood_vessel": 1.545141302933429e-10
}
},
{
"filename": "final_test_set_primary_roi_008.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8282728598956179
},
"micro": {
"recall": 0.8444444444444444,
"f1_score": 0.8587570621468928,
"precision": 0.8735632183908046
},
"nuclei_other": {
"FN": 14,
"FP": 26,
"TP": 66,
"recall": 0.825,
"f1_score": 0.7674418604651162,
"precision": 0.717391304347826
},
"nuclei_tumor": {
"FN": 12,
"FP": 3,
"TP": 128,
"recall": 0.9142857142857143,
"f1_score": 0.9446494464944649,
"precision": 0.9770992366412213
},
"nuclei_lymphocyte": {
"FN": 16,
"FP": 4,
"TP": 34,
"recall": 0.68,
"f1_score": 0.7727272727272727,
"precision": 0.8947368421052632
}
},
"tissue_metrics": {
"average_dice": 0.8856295656714899,
"tissue_tumor": 0.974571446783537,
"tissue_stroma": 0.9343960535080023,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5191803280659097
}
},
{
"filename": "final_test_set_primary_roi_009.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7951543354844243
},
"micro": {
"recall": 0.7462235649546828,
"f1_score": 0.7891373801916933,
"precision": 0.8372881355932204
},
"nuclei_other": {
"FN": 50,
"FP": 29,
"TP": 139,
"recall": 0.7354497354497355,
"f1_score": 0.7787114845938374,
"precision": 0.8273809523809523
},
"nuclei_tumor": {
"FN": 13,
"FP": 11,
"TP": 53,
"recall": 0.803030303030303,
"f1_score": 0.8153846153846153,
"precision": 0.828125
},
"nuclei_lymphocyte": {
"FN": 21,
"FP": 8,
"TP": 55,
"recall": 0.7236842105263158,
"f1_score": 0.7913669064748201,
"precision": 0.873015873015873
}
},
"tissue_metrics": {
"average_dice": 0.8939425238309276,
"tissue_tumor": 0.8750892937314874,
"tissue_stroma": 0.8248576163372172,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.7697657090859332,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_010.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5729681846741738
},
"micro": {
"recall": 0.7682481751824818,
"f1_score": 0.8034351145038168,
"precision": 0.842
},
"nuclei_other": {
"FN": 23,
"FP": 4,
"TP": 1,
"recall": 0.041666666666666664,
"f1_score": 0.06896551724137931,
"precision": 0.2
},
"nuclei_tumor": {
"FN": 70,
"FP": 64,
"TP": 313,
"recall": 0.8172323759791122,
"f1_score": 0.8236842105263158,
"precision": 0.830238726790451
},
"nuclei_lymphocyte": {
"FN": 34,
"FP": 11,
"TP": 107,
"recall": 0.7588652482269503,
"f1_score": 0.8262548262548263,
"precision": 0.9067796610169492
}
},
"tissue_metrics": {
"average_dice": 0.5966948098845082,
"tissue_tumor": 0.9834740467791818,
"tissue_stroma": 2.3073373273942383e-09,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.360215052634337e-10
}
},
{
"filename": "final_test_set_primary_roi_011.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5643500426338015
},
"micro": {
"recall": 0.7790178571428571,
"f1_score": 0.8299643281807372,
"precision": 0.8880407124681934
},
"nuclei_other": {
"FN": 2,
"FP": 22,
"TP": 1,
"recall": 0.3333333333333333,
"f1_score": 0.07692307692307691,
"precision": 0.043478260869565216
},
"nuclei_tumor": {
"FN": 94,
"FP": 18,
"TP": 337,
"recall": 0.7819025522041764,
"f1_score": 0.8575063613231553,
"precision": 0.9492957746478873
},
"nuclei_lymphocyte": {
"FN": 3,
"FP": 4,
"TP": 11,
"recall": 0.7857142857142857,
"f1_score": 0.7586206896551724,
"precision": 0.7333333333333333
}
},
"tissue_metrics": {
"average_dice": 0.8930385426771099,
"tissue_tumor": 0.9614013640756534,
"tissue_stroma": 0.5037913493098967,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_012.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8108153264447511
},
"micro": {
"recall": 0.7770114942528735,
"f1_score": 0.7990543735224587,
"precision": 0.8223844282238443
},
"nuclei_other": {
"FN": 43,
"FP": 58,
"TP": 159,
"recall": 0.7871287128712872,
"f1_score": 0.7589498806682577,
"precision": 0.7327188940092166
},
"nuclei_tumor": {
"FN": 17,
"FP": 6,
"TP": 57,
"recall": 0.7702702702702703,
"f1_score": 0.832116788321168,
"precision": 0.9047619047619048
},
"nuclei_lymphocyte": {
"FN": 37,
"FP": 9,
"TP": 122,
"recall": 0.7672955974842768,
"f1_score": 0.8413793103448276,
"precision": 0.9312977099236641
}
},
"tissue_metrics": {
"average_dice": 0.8769197912866271,
"tissue_tumor": 0.8940639084870116,
"tissue_stroma": 0.9376059814298,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5529290665163241
}
},
{
"filename": "final_test_set_primary_roi_013.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6036095308125958
},
"micro": {
"recall": 0.6873015873015873,
"f1_score": 0.7556719022687609,
"precision": 0.8391472868217055
},
"nuclei_other": {
"FN": 33,
"FP": 26,
"TP": 11,
"recall": 0.25,
"f1_score": 0.2716049382716049,
"precision": 0.2972972972972973
},
"nuclei_tumor": {
"FN": 147,
"FP": 28,
"TP": 358,
"recall": 0.7089108910891089,
"f1_score": 0.8035914702581369,
"precision": 0.927461139896373
},
"nuclei_lymphocyte": {
"FN": 17,
"FP": 29,
"TP": 64,
"recall": 0.7901234567901234,
"f1_score": 0.735632183908046,
"precision": 0.6881720430107527
}
},
"tissue_metrics": {
"average_dice": 0.739431972293206,
"tissue_tumor": 0.9567823283362044,
"tissue_stroma": 0.7403775322383219,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 8.915039663978748e-10
}
},
{
"filename": "final_test_set_primary_roi_014.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7573153396311291
},
"micro": {
"recall": 0.727735368956743,
"f1_score": 0.7771739130434782,
"precision": 0.8338192419825073
},
"nuclei_other": {
"FN": 44,
"FP": 25,
"TP": 89,
"recall": 0.6691729323308271,
"f1_score": 0.7206477732793523,
"precision": 0.7807017543859649
},
"nuclei_tumor": {
"FN": 51,
"FP": 12,
"TP": 156,
"recall": 0.7536231884057971,
"f1_score": 0.8320000000000001,
"precision": 0.9285714285714286
},
"nuclei_lymphocyte": {
"FN": 12,
"FP": 20,
"TP": 41,
"recall": 0.7735849056603774,
"f1_score": 0.719298245614035,
"precision": 0.6721311475409836
}
},
"tissue_metrics": {
"average_dice": 0.932619609257905,
"tissue_tumor": 0.9616764574661503,
"tissue_stroma": 0.9342191866153011,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7672024022080738
}
},
{
"filename": "final_test_set_primary_roi_015.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.5018453218792778
},
"micro": {
"recall": 0.8660714285714286,
"f1_score": 0.8798185941043083,
"precision": 0.8940092165898618
},
"nuclei_other": {
"FN": 12,
"FP": 4,
"TP": 5,
"recall": 0.29411764705882354,
"f1_score": 0.3846153846153846,
"precision": 0.5555555555555556
},
"nuclei_tumor": {
"FN": 35,
"FP": 40,
"TP": 381,
"recall": 0.9158653846153846,
"f1_score": 0.910394265232975,
"precision": 0.9049881235154394
},
"nuclei_lymphocyte": {
"FN": 13,
"FP": 2,
"TP": 2,
"recall": 0.13333333333333333,
"f1_score": 0.2105263157894737,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.6640562401590206,
"tissue_tumor": 0.9738640881538574,
"tissue_stroma": 0.046401921467020775,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.30001519117422515
}
},
{
"filename": "final_test_set_primary_roi_016.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7096601558194499
},
"micro": {
"recall": 0.6633064516129032,
"f1_score": 0.712121212121212,
"precision": 0.7686915887850467
},
"nuclei_other": {
"FN": 33,
"FP": 59,
"TP": 59,
"recall": 0.6413043478260869,
"f1_score": 0.5619047619047619,
"precision": 0.5
},
"nuclei_tumor": {
"FN": 132,
"FP": 23,
"TP": 226,
"recall": 0.6312849162011173,
"f1_score": 0.744645799011532,
"precision": 0.9076305220883534
},
"nuclei_lymphocyte": {
"FN": 2,
"FP": 17,
"TP": 44,
"recall": 0.9565217391304348,
"f1_score": 0.822429906542056,
"precision": 0.7213114754098361
}
},
"tissue_metrics": {
"average_dice": 0.824933718713989,
"tissue_tumor": 0.8805602229885214,
"tissue_stroma": 0.9129885667658684,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.33111980381555545
}
},
{
"filename": "final_test_set_primary_roi_017.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7964172973211098
},
"micro": {
"recall": 0.7772727272727272,
"f1_score": 0.7953488372093024,
"precision": 0.8142857142857143
},
"nuclei_other": {
"FN": 36,
"FP": 53,
"TP": 176,
"recall": 0.8301886792452831,
"f1_score": 0.7981859410430839,
"precision": 0.7685589519650655
},
"nuclei_tumor": {
"FN": 50,
"FP": 6,
"TP": 100,
"recall": 0.6666666666666666,
"f1_score": 0.7812499999999999,
"precision": 0.9433962264150944
},
"nuclei_lymphocyte": {
"FN": 12,
"FP": 19,
"TP": 66,
"recall": 0.8461538461538461,
"f1_score": 0.8098159509202454,
"precision": 0.7764705882352941
}
},
"tissue_metrics": {
"average_dice": 0.7985814582099209,
"tissue_tumor": 0.9118843199293121,
"tissue_stroma": 0.96765860436282,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.8435869461459288,
"tissue_blood_vessel": 0.26977742061154336
}
},
{
"filename": "final_test_set_primary_roi_018.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6476314877059838
},
"micro": {
"recall": 0.7604395604395604,
"f1_score": 0.7949454336588168,
"precision": 0.8327316486161251
},
"nuclei_other": {
"FN": 22,
"FP": 11,
"TP": 8,
"recall": 0.26666666666666666,
"f1_score": 0.326530612244898,
"precision": 0.42105263157894735
},
"nuclei_tumor": {
"FN": 132,
"FP": 66,
"TP": 421,
"recall": 0.7613019891500904,
"f1_score": 0.8096153846153846,
"precision": 0.864476386036961
},
"nuclei_lymphocyte": {
"FN": 64,
"FP": 62,
"TP": 263,
"recall": 0.8042813455657493,
"f1_score": 0.8067484662576686,
"precision": 0.8092307692307692
}
},
"tissue_metrics": {
"average_dice": 0.9225993195477482,
"tissue_tumor": 0.9972505742578003,
"tissue_stroma": 1.0,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.615746023480941
}
},
{
"filename": "final_test_set_primary_roi_019.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7559124169647914
},
"micro": {
"recall": 0.7452054794520548,
"f1_score": 0.7503448275862069,
"precision": 0.7555555555555555
},
"nuclei_other": {
"FN": 43,
"FP": 35,
"TP": 100,
"recall": 0.6993006993006993,
"f1_score": 0.7194244604316545,
"precision": 0.7407407407407407
},
"nuclei_tumor": {
"FN": 23,
"FP": 44,
"TP": 89,
"recall": 0.7946428571428571,
"f1_score": 0.726530612244898,
"precision": 0.6691729323308271
},
"nuclei_lymphocyte": {
"FN": 27,
"FP": 9,
"TP": 83,
"recall": 0.7545454545454545,
"f1_score": 0.8217821782178217,
"precision": 0.9021739130434783
}
},
"tissue_metrics": {
"average_dice": 0.7235534617697204,
"tissue_tumor": 0.8037722983638999,
"tissue_stroma": 0.8754194444427835,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.20244745164826583,
"tissue_blood_vessel": 0.7361281143936526
}
},
{
"filename": "final_test_set_primary_roi_020.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.767175009734323
},
"micro": {
"recall": 0.7947686116700201,
"f1_score": 0.8077709611451942,
"precision": 0.8212058212058212
},
"nuclei_other": {
"FN": 34,
"FP": 41,
"TP": 63,
"recall": 0.6494845360824743,
"f1_score": 0.6268656716417911,
"precision": 0.6057692307692307
},
"nuclei_tumor": {
"FN": 56,
"FP": 25,
"TP": 265,
"recall": 0.8255451713395638,
"f1_score": 0.8674304418985271,
"precision": 0.9137931034482759
},
"nuclei_lymphocyte": {
"FN": 12,
"FP": 20,
"TP": 67,
"recall": 0.8481012658227848,
"f1_score": 0.8072289156626505,
"precision": 0.7701149425287356
}
},
"tissue_metrics": {
"average_dice": 0.7370356651763253,
"tissue_tumor": 0.8890259741227396,
"tissue_stroma": 0.7961523500266854,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.7322016252690084e-09
}
},
{
"filename": "final_test_set_primary_roi_021.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8028911281600606
},
"micro": {
"recall": 0.7851002865329513,
"f1_score": 0.7988338192419824,
"precision": 0.8130563798219584
},
"nuclei_other": {
"FN": 37,
"FP": 26,
"TP": 94,
"recall": 0.7175572519083969,
"f1_score": 0.749003984063745,
"precision": 0.7833333333333333
},
"nuclei_tumor": {
"FN": 32,
"FP": 15,
"TP": 93,
"recall": 0.744,
"f1_score": 0.7982832618025751,
"precision": 0.8611111111111112
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 22,
"TP": 87,
"recall": 0.9354838709677419,
"f1_score": 0.8613861386138614,
"precision": 0.7981651376146789
}
},
"tissue_metrics": {
"average_dice": 0.8634006304048324,
"tissue_tumor": 0.913558875633568,
"tissue_stroma": 0.9120606082437673,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.491383668146826
}
},
{
"filename": "final_test_set_primary_roi_022.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7801761439395346
},
"micro": {
"recall": 0.8170347003154574,
"f1_score": 0.8314606741573034,
"precision": 0.8464052287581699
},
"nuclei_other": {
"FN": 8,
"FP": 35,
"TP": 35,
"recall": 0.813953488372093,
"f1_score": 0.6194690265486725,
"precision": 0.5
},
"nuclei_tumor": {
"FN": 32,
"FP": 11,
"TP": 178,
"recall": 0.8476190476190476,
"f1_score": 0.8922305764411027,
"precision": 0.9417989417989417
},
"nuclei_lymphocyte": {
"FN": 18,
"FP": 1,
"TP": 46,
"recall": 0.71875,
"f1_score": 0.8288288288288289,
"precision": 0.9787234042553191
}
},
"tissue_metrics": {
"average_dice": 0.956681002382512,
"tissue_tumor": 0.9376264040057002,
"tissue_stroma": 0.8457786079068595,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_023.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.54681411269089
},
"micro": {
"recall": 0.7900874635568513,
"f1_score": 0.8237082066869301,
"precision": 0.8603174603174604
},
"nuclei_other": {
"FN": 5,
"FP": 7,
"TP": 4,
"recall": 0.4444444444444444,
"f1_score": 0.39999999999999997,
"precision": 0.36363636363636365
},
"nuclei_tumor": {
"FN": 66,
"FP": 35,
"TP": 266,
"recall": 0.8012048192771084,
"f1_score": 0.8404423380726698,
"precision": 0.8837209302325582
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 2,
"TP": 1,
"recall": 0.5,
"f1_score": 0.4,
"precision": 0.3333333333333333
}
},
"tissue_metrics": {
"average_dice": 0.8310202988455085,
"tissue_tumor": 0.9928207920021044,
"tissue_stroma": 0.16228070222543822,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_024.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7776577121471459
},
"micro": {
"recall": 0.7375886524822695,
"f1_score": 0.7790262172284643,
"precision": 0.8253968253968254
},
"nuclei_other": {
"FN": 20,
"FP": 43,
"TP": 75,
"recall": 0.7894736842105263,
"f1_score": 0.7042253521126761,
"precision": 0.635593220338983
},
"nuclei_tumor": {
"FN": 24,
"FP": 9,
"TP": 89,
"recall": 0.7876106194690266,
"f1_score": 0.8436018957345971,
"precision": 0.9081632653061225
},
"nuclei_lymphocyte": {
"FN": 67,
"FP": 14,
"TP": 148,
"recall": 0.6883720930232559,
"f1_score": 0.7851458885941645,
"precision": 0.9135802469135802
}
},
"tissue_metrics": {
"average_dice": 0.9740638869519247,
"tissue_tumor": 0.9359446700657141,
"tissue_stroma": 0.9343747646939093,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_025.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6171212900279816
},
"micro": {
"recall": 0.6126126126126126,
"f1_score": 0.6290471785383903,
"precision": 0.6463878326996197
},
"nuclei_other": {
"FN": 108,
"FP": 79,
"TP": 150,
"recall": 0.5813953488372093,
"f1_score": 0.6160164271047227,
"precision": 0.6550218340611353
},
"nuclei_tumor": {
"FN": 25,
"FP": 80,
"TP": 59,
"recall": 0.7023809523809523,
"f1_score": 0.5291479820627802,
"precision": 0.4244604316546763
},
"nuclei_lymphocyte": {
"FN": 82,
"FP": 27,
"TP": 131,
"recall": 0.6150234741784038,
"f1_score": 0.7061994609164419,
"precision": 0.8291139240506329
}
},
"tissue_metrics": {
"average_dice": 0.8345892935338803,
"tissue_tumor": 0.6652513691525725,
"tissue_stroma": 0.8179038532600732,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.6897912452567556
}
},
{
"filename": "final_test_set_primary_roi_026.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7574015048901378
},
"micro": {
"recall": 0.8400852878464818,
"f1_score": 0.8473118279569892,
"precision": 0.8546637744034707
},
"nuclei_other": {
"FN": 23,
"FP": 34,
"TP": 68,
"recall": 0.7472527472527473,
"f1_score": 0.7046632124352332,
"precision": 0.6666666666666666
},
"nuclei_tumor": {
"FN": 47,
"FP": 21,
"TP": 309,
"recall": 0.8679775280898876,
"f1_score": 0.9008746355685131,
"precision": 0.9363636363636364
},
"nuclei_lymphocyte": {
"FN": 5,
"FP": 12,
"TP": 17,
"recall": 0.7727272727272727,
"f1_score": 0.6666666666666667,
"precision": 0.5862068965517241
}
},
"tissue_metrics": {
"average_dice": 0.9348245732377658,
"tissue_tumor": 0.9543418762200719,
"tissue_stroma": 0.9395959666821851,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7801850232865718
}
},
{
"filename": "final_test_set_primary_roi_027.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7629656117337008
},
"micro": {
"recall": 0.78515625,
"f1_score": 0.7992047713717694,
"precision": 0.8137651821862348
},
"nuclei_other": {
"FN": 63,
"FP": 39,
"TP": 127,
"recall": 0.6684210526315789,
"f1_score": 0.7134831460674157,
"precision": 0.7650602409638554
},
"nuclei_tumor": {
"FN": 11,
"FP": 10,
"TP": 26,
"recall": 0.7027027027027027,
"f1_score": 0.7123287671232876,
"precision": 0.7222222222222222
},
"nuclei_lymphocyte": {
"FN": 36,
"FP": 43,
"TP": 249,
"recall": 0.8736842105263158,
"f1_score": 0.8630849220103987,
"precision": 0.8527397260273972
}
},
"tissue_metrics": {
"average_dice": 0.7215762417240149,
"tissue_tumor": 0.8403241645080705,
"tissue_stroma": 0.9779496854425426,
"tissue_necrosis": 1.0,
"tissue_epidermis": 6.22200099164883e-10,
"tissue_blood_vessel": 0.7896073580472611
}
},
{
"filename": "final_test_set_primary_roi_028.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7452584138424344
},
"micro": {
"recall": 0.740983606557377,
"f1_score": 0.7964757709251101,
"precision": 0.8609523809523809
},
"nuclei_other": {
"FN": 24,
"FP": 44,
"TP": 46,
"recall": 0.6571428571428571,
"f1_score": 0.575,
"precision": 0.5111111111111111
},
"nuclei_tumor": {
"FN": 82,
"FP": 17,
"TP": 259,
"recall": 0.7595307917888563,
"f1_score": 0.839546191247974,
"precision": 0.9384057971014492
},
"nuclei_lymphocyte": {
"FN": 52,
"FP": 12,
"TP": 147,
"recall": 0.7386934673366834,
"f1_score": 0.8212290502793296,
"precision": 0.9245283018867925
}
},
"tissue_metrics": {
"average_dice": 0.7001207255066836,
"tissue_tumor": 0.9554552487816697,
"tissue_stroma": 0.8640755217960295,
"tissue_necrosis": 1.0,
"tissue_epidermis": 6.108735454436559e-09,
"tissue_blood_vessel": 0.6810728508469835
}
},
{
"filename": "final_test_set_primary_roi_029.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.44593376445228294
},
"micro": {
"recall": 0.8163771712158809,
"f1_score": 0.8590078328981724,
"precision": 0.90633608815427
},
"nuclei_other": {
"FN": 11,
"FP": 8,
"TP": 8,
"recall": 0.42105263157894735,
"f1_score": 0.45714285714285713,
"precision": 0.5
},
"nuclei_tumor": {
"FN": 63,
"FP": 24,
"TP": 321,
"recall": 0.8359375,
"f1_score": 0.8806584362139918,
"precision": 0.9304347826086956
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 2,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7049843829913099,
"tissue_tumor": 0.9859466727164461,
"tissue_stroma": 0.5389752402681061,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.9719976297140654e-09
}
},
{
"filename": "final_test_set_primary_roi_030.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8005360886760875
},
"micro": {
"recall": 0.7727272727272727,
"f1_score": 0.8010471204188482,
"precision": 0.8315217391304348
},
"nuclei_other": {
"FN": 40,
"FP": 23,
"TP": 94,
"recall": 0.7014925373134329,
"f1_score": 0.7490039840637451,
"precision": 0.8034188034188035
},
"nuclei_tumor": {
"FN": 28,
"FP": 25,
"TP": 127,
"recall": 0.8193548387096774,
"f1_score": 0.8273615635179153,
"precision": 0.8355263157894737
},
"nuclei_lymphocyte": {
"FN": 22,
"FP": 14,
"TP": 85,
"recall": 0.794392523364486,
"f1_score": 0.8252427184466019,
"precision": 0.8585858585858586
}
},
"tissue_metrics": {
"average_dice": 0.8955138408108445,
"tissue_tumor": 0.9435652382970594,
"tissue_stroma": 0.9499624427674276,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.8848112433726367,
"tissue_blood_vessel": 0.6992302796170986
}
},
{
"filename": "final_test_set_primary_roi_031.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7747547593689667
},
"micro": {
"recall": 0.7539863325740319,
"f1_score": 0.7825059101654847,
"precision": 0.8132678132678133
},
"nuclei_other": {
"FN": 63,
"FP": 38,
"TP": 173,
"recall": 0.7330508474576272,
"f1_score": 0.7740492170022372,
"precision": 0.8199052132701422
},
"nuclei_tumor": {
"FN": 23,
"FP": 2,
"TP": 36,
"recall": 0.6101694915254238,
"f1_score": 0.7422680412371134,
"precision": 0.9473684210526315
},
"nuclei_lymphocyte": {
"FN": 22,
"FP": 36,
"TP": 122,
"recall": 0.8472222222222222,
"f1_score": 0.8079470198675496,
"precision": 0.7721518987341772
}
},
"tissue_metrics": {
"average_dice": 0.862538516847585,
"tissue_tumor": 0.90276544001286,
"tissue_stroma": 0.981726374276242,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.4282007699488228
}
},
{
"filename": "final_test_set_primary_roi_032.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7948066539638452
},
"micro": {
"recall": 0.8137164040778498,
"f1_score": 0.857421875,
"precision": 0.9060887512899897
},
"nuclei_other": {
"FN": 49,
"FP": 45,
"TP": 93,
"recall": 0.6549295774647887,
"f1_score": 0.6642857142857143,
"precision": 0.6739130434782609
},
"nuclei_tumor": {
"FN": 10,
"FP": 4,
"TP": 34,
"recall": 0.7727272727272727,
"f1_score": 0.8292682926829269,
"precision": 0.8947368421052632
},
"nuclei_lymphocyte": {
"FN": 142,
"FP": 42,
"TP": 751,
"recall": 0.8409854423292273,
"f1_score": 0.8908659549228944,
"precision": 0.9470365699873896
}
},
"tissue_metrics": {
"average_dice": 0.9809510218191682,
"tissue_tumor": 0.9141368910789824,
"tissue_stroma": 0.9906182180168582,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_033.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.4590604026845638
},
"micro": {
"recall": 0.8746803069053708,
"f1_score": 0.9168900804289545,
"precision": 0.9633802816901409
},
"nuclei_tumor": {
"FN": 49,
"FP": 12,
"TP": 342,
"recall": 0.8746803069053708,
"f1_score": 0.9181208053691275,
"precision": 0.9661016949152542
},
"nuclei_lymphocyte": {
"FN": 0,
"FP": 1,
"TP": 0,
"recall": 0,
"f1_score": 0,
"precision": 0.0
}
},
"tissue_metrics": {
"average_dice": 0.7956673312075143,
"tissue_tumor": 0.9783366558126905,
"tissue_stroma": 2.2488081311844903e-10,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_034.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6986429757282154
},
"micro": {
"recall": 0.7389033942558747,
"f1_score": 0.751660026560425,
"precision": 0.7648648648648648
},
"nuclei_other": {
"FN": 17,
"FP": 48,
"TP": 32,
"recall": 0.6530612244897959,
"f1_score": 0.4961240310077519,
"precision": 0.4
},
"nuclei_tumor": {
"FN": 59,
"FP": 19,
"TP": 170,
"recall": 0.74235807860262,
"f1_score": 0.8133971291866029,
"precision": 0.8994708994708994
},
"nuclei_lymphocyte": {
"FN": 24,
"FP": 20,
"TP": 81,
"recall": 0.7714285714285715,
"f1_score": 0.7864077669902912,
"precision": 0.801980198019802
}
},
"tissue_metrics": {
"average_dice": 0.5423037612601074,
"tissue_tumor": 0.6789189093063921,
"tissue_stroma": 0.03259988698413495,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0010009909809712e-08
}
},
{
"filename": "final_test_set_primary_roi_035.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7643085980214904
},
"micro": {
"recall": 0.7429963459196103,
"f1_score": 0.780550223928343,
"precision": 0.8221024258760108
},
"nuclei_other": {
"FN": 91,
"FP": 86,
"TP": 148,
"recall": 0.6192468619246861,
"f1_score": 0.6257928118393234,
"precision": 0.6324786324786325
},
"nuclei_tumor": {
"FN": 11,
"FP": 7,
"TP": 40,
"recall": 0.7843137254901961,
"f1_score": 0.8163265306122448,
"precision": 0.851063829787234
},
"nuclei_lymphocyte": {
"FN": 109,
"FP": 39,
"TP": 422,
"recall": 0.7947269303201506,
"f1_score": 0.8508064516129031,
"precision": 0.9154013015184381
}
},
"tissue_metrics": {
"average_dice": 0.801722382888413,
"tissue_tumor": 0.7110607788306776,
"tissue_stroma": 0.9336896605286426,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.3638614750827451
}
},
{
"filename": "final_test_set_primary_roi_036.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6579027344881934
},
"micro": {
"recall": 0.6647727272727273,
"f1_score": 0.6628895184135978,
"precision": 0.6610169491525424
},
"nuclei_other": {
"FN": 60,
"FP": 25,
"TP": 57,
"recall": 0.48717948717948717,
"f1_score": 0.5728643216080401,
"precision": 0.6951219512195121
},
"nuclei_tumor": {
"FN": 5,
"FP": 85,
"TP": 90,
"recall": 0.9473684210526315,
"f1_score": 0.6666666666666666,
"precision": 0.5142857142857142
},
"nuclei_lymphocyte": {
"FN": 53,
"FP": 10,
"TP": 87,
"recall": 0.6214285714285714,
"f1_score": 0.7341772151898734,
"precision": 0.8969072164948454
}
},
"tissue_metrics": {
"average_dice": 0.6918951409477347,
"tissue_tumor": 0.695678862954658,
"tissue_stroma": 0.7637968386985486,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 3.085467438798311e-09
}
},
{
"filename": "final_test_set_primary_roi_037.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7473912117260292
},
"micro": {
"recall": 0.7219387755102041,
"f1_score": 0.7379400260756194,
"precision": 0.7546666666666667
},
"nuclei_other": {
"FN": 32,
"FP": 73,
"TP": 106,
"recall": 0.7681159420289855,
"f1_score": 0.668769716088328,
"precision": 0.5921787709497207
},
"nuclei_tumor": {
"FN": 37,
"FP": 9,
"TP": 89,
"recall": 0.7063492063492064,
"f1_score": 0.7946428571428572,
"precision": 0.9081632653061225
},
"nuclei_lymphocyte": {
"FN": 40,
"FP": 10,
"TP": 88,
"recall": 0.6875,
"f1_score": 0.7787610619469025,
"precision": 0.8979591836734694
}
},
"tissue_metrics": {
"average_dice": 0.8434632608825531,
"tissue_tumor": 0.9280690008493904,
"tissue_stroma": 0.9414328615631109,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.34781444200026396
}
},
{
"filename": "final_test_set_primary_roi_038.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.8052666178169562
},
"micro": {
"recall": 0.7872340425531915,
"f1_score": 0.799136069114471,
"precision": 0.8114035087719298
},
"nuclei_other": {
"FN": 77,
"FP": 21,
"TP": 132,
"recall": 0.631578947368421,
"f1_score": 0.729281767955801,
"precision": 0.8627450980392157
},
"nuclei_tumor": {
"FN": 13,
"FP": 20,
"TP": 87,
"recall": 0.87,
"f1_score": 0.8405797101449274,
"precision": 0.8130841121495327
},
"nuclei_lymphocyte": {
"FN": 10,
"FP": 45,
"TP": 151,
"recall": 0.937888198757764,
"f1_score": 0.8459383753501402,
"precision": 0.7704081632653061
}
},
"tissue_metrics": {
"average_dice": 0.9394822337686503,
"tissue_tumor": 0.9603057092261584,
"tissue_stroma": 0.9765756538054341,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7605298058116587
}
},
{
"filename": "final_test_set_primary_roi_039.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7121667302915125
},
"micro": {
"recall": 0.7384196185286104,
"f1_score": 0.7742857142857142,
"precision": 0.8138138138138138
},
"nuclei_other": {
"FN": 21,
"FP": 21,
"TP": 36,
"recall": 0.631578947368421,
"f1_score": 0.631578947368421,
"precision": 0.631578947368421
},
"nuclei_tumor": {
"FN": 40,
"FP": 31,
"TP": 191,
"recall": 0.8268398268398268,
"f1_score": 0.8432671081677704,
"precision": 0.8603603603603603
},
"nuclei_lymphocyte": {
"FN": 35,
"FP": 10,
"TP": 44,
"recall": 0.5569620253164557,
"f1_score": 0.6616541353383458,
"precision": 0.8148148148148148
}
},
"tissue_metrics": {
"average_dice": 0.9854191020764537,
"tissue_tumor": 0.9903744890173234,
"tissue_stroma": 0.9367210213649448,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_040.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6863208678072645
},
"micro": {
"recall": 0.7914285714285715,
"f1_score": 0.8231797919762259,
"precision": 0.8575851393188855
},
"nuclei_other": {
"FN": 19,
"FP": 22,
"TP": 48,
"recall": 0.7164179104477612,
"f1_score": 0.7007299270072992,
"precision": 0.6857142857142857
},
"nuclei_tumor": {
"FN": 30,
"FP": 20,
"TP": 217,
"recall": 0.8785425101214575,
"f1_score": 0.896694214876033,
"precision": 0.9156118143459916
},
"nuclei_lymphocyte": {
"FN": 24,
"FP": 4,
"TP": 12,
"recall": 0.3333333333333333,
"f1_score": 0.46153846153846156,
"precision": 0.75
}
},
"tissue_metrics": {
"average_dice": 0.8329945002358243,
"tissue_tumor": 0.9697474963139,
"tissue_stroma": 0.8749820261732256,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.8113501464008608,
"tissue_blood_vessel": 0.5088928322911349
}
},
{
"filename": "final_test_set_primary_roi_041.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.620924326075427
},
"micro": {
"recall": 0.6475409836065574,
"f1_score": 0.6713881019830028,
"precision": 0.6970588235294117
},
"nuclei_other": {
"FN": 62,
"FP": 15,
"TP": 43,
"recall": 0.4095238095238095,
"f1_score": 0.5276073619631901,
"precision": 0.7413793103448276
},
"nuclei_tumor": {
"FN": 31,
"FP": 86,
"TP": 166,
"recall": 0.8426395939086294,
"f1_score": 0.7394209354120268,
"precision": 0.6587301587301587
},
"nuclei_lymphocyte": {
"FN": 36,
"FP": 2,
"TP": 28,
"recall": 0.4375,
"f1_score": 0.5957446808510638,
"precision": 0.9333333333333333
}
},
"tissue_metrics": {
"average_dice": 0.8305001714168432,
"tissue_tumor": 0.8651613838362009,
"tissue_stroma": 0.5714448771798034,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.7158945960682117
}
},
{
"filename": "final_test_set_primary_roi_042.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7529997519123128
},
"micro": {
"recall": 0.8752642706131079,
"f1_score": 0.9009793253536453,
"precision": 0.9282511210762332
},
"nuclei_other": {
"FN": 25,
"FP": 13,
"TP": 68,
"recall": 0.7311827956989247,
"f1_score": 0.7816091954022988,
"precision": 0.8395061728395061
},
"nuclei_tumor": {
"FN": 25,
"FP": 6,
"TP": 334,
"recall": 0.9303621169916435,
"f1_score": 0.9556509298998569,
"precision": 0.9823529411764705
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 13,
"TP": 12,
"recall": 0.5714285714285714,
"f1_score": 0.5217391304347826,
"precision": 0.48
}
},
"tissue_metrics": {
"average_dice": 0.8799137746684667,
"tissue_tumor": 0.9788876556191308,
"tissue_stroma": 0.8730830512672832,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 0.5475981664559191
}
},
{
"filename": "final_test_set_primary_roi_043.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7326904301648822
},
"micro": {
"recall": 0.7071524966261808,
"f1_score": 0.7469707769066287,
"precision": 0.7915407854984894
},
"nuclei_other": {
"FN": 100,
"FP": 43,
"TP": 110,
"recall": 0.5238095238095238,
"f1_score": 0.6060606060606061,
"precision": 0.7189542483660131
},
"nuclei_tumor": {
"FN": 66,
"FP": 28,
"TP": 182,
"recall": 0.7338709677419355,
"f1_score": 0.794759825327511,
"precision": 0.8666666666666667
},
"nuclei_lymphocyte": {
"FN": 51,
"FP": 67,
"TP": 232,
"recall": 0.8197879858657244,
"f1_score": 0.7972508591065293,
"precision": 0.7759197324414716
}
},
"tissue_metrics": {
"average_dice": 0.7710731949499254,
"tissue_tumor": 0.9314451162711994,
"tissue_stroma": 0.9239208494775278,
"tissue_necrosis": 1.0,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 9.0009000089928e-09
}
},
{
"filename": "final_test_set_primary_roi_044.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.691217083311945
},
"micro": {
"recall": 0.7583497053045186,
"f1_score": 0.7681592039800994,
"precision": 0.7782258064516129
},
"nuclei_other": {
"FN": 61,
"FP": 21,
"TP": 64,
"recall": 0.512,
"f1_score": 0.6095238095238096,
"precision": 0.7529411764705882
},
"nuclei_tumor": {
"FN": 56,
"FP": 70,
"TP": 300,
"recall": 0.8426966292134831,
"f1_score": 0.8264462809917356,
"precision": 0.8108108108108109
},
"nuclei_lymphocyte": {
"FN": 6,
"FP": 19,
"TP": 22,
"recall": 0.7857142857142857,
"f1_score": 0.6376811594202899,
"precision": 0.5365853658536586
}
},
"tissue_metrics": {
"average_dice": 0.40999611129460617,
"tissue_tumor": 0.8977674715627827,
"tissue_stroma": 0.15221308472726383,
"tissue_necrosis": 6.493590825433215e-11,
"tissue_epidermis": 1.0,
"tissue_blood_vessel": 1.1804842344936922e-10
}
},
{
"filename": "final_test_set_primary_roi_045.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.7286677764972042
},
"micro": {
"recall": 0.851985559566787,
"f1_score": 0.8740740740740741,
"precision": 0.8973384030418251
},
"nuclei_other": {
"FN": 19,
"FP": 12,
"TP": 53,
"recall": 0.7361111111111112,
"f1_score": 0.7737226277372263,
"precision": 0.8153846153846154
},
"nuclei_tumor": {
"FN": 21,
"FP": 14,
"TP": 182,
"recall": 0.896551724137931,
"f1_score": 0.912280701754386,
"precision": 0.9285714285714286
},
"nuclei_lymphocyte": {
"FN": 1,
"FP": 1,
"TP": 1,
"recall": 0.5,
"f1_score": 0.5,
"precision": 0.5
}
},
"tissue_metrics": {
"average_dice": 0.8666320915564398,
"tissue_tumor": 0.9785571821022805,
"tissue_stroma": 0.5079555090438463,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.8466477666360726,
"tissue_blood_vessel": 1.0
}
},
{
"filename": "final_test_set_primary_roi_046.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6651383399209486
},
"micro": {
"recall": 0.7896253602305475,
"f1_score": 0.8277945619335346,
"precision": 0.8698412698412699
},
"nuclei_other": {
"FN": 30,
"FP": 33,
"TP": 231,
"recall": 0.8850574712643678,
"f1_score": 0.8800000000000001,
"precision": 0.875
},
"nuclei_tumor": {
"FN": 34,
"FP": 5,
"TP": 38,
"recall": 0.5277777777777778,
"f1_score": 0.6608695652173913,
"precision": 0.8837209302325582
},
"nuclei_lymphocyte": {
"FN": 9,
"FP": 3,
"TP": 5,
"recall": 0.35714285714285715,
"f1_score": 0.45454545454545453,
"precision": 0.625
}
},
"tissue_metrics": {
"average_dice": 0.8637775442303287,
"tissue_tumor": 0.9428422486445069,
"tissue_stroma": 0.936887642395599,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.9807928443490121,
"tissue_blood_vessel": 0.4583649857625248
}
},
{
"filename": "final_test_set_primary_roi_047.tif",
"nuclei_metrics": {
"macro": {
"f1_score": 0.6871259661957336
},
"micro": {
"recall": 0.85,
"f1_score": 0.8812095032397408,
"precision": 0.9147982062780269
},
"nuclei_other": {
"FN": 14,
"FP": 12,
"TP": 86,
"recall": 0.86,
"f1_score": 0.8686868686868686,
"precision": 0.8775510204081632
},
"nuclei_tumor": {
"FN": 19,
"FP": 5,
"TP": 117,
"recall": 0.8602941176470589,
"f1_score": 0.9069767441860465,
"precision": 0.9590163934426229
},
"nuclei_lymphocyte": {
"FN": 3,
"FP": 2,
"TP": 1,
"recall": 0.25,
"f1_score": 0.28571428571428575,
"precision": 0.3333333333333333
}
},
"tissue_metrics": {
"average_dice": 0.8163145557376751,
"tissue_tumor": 0.9653804675969502,
"tissue_stroma": 0.7732335659517955,
"tissue_necrosis": 1.0,
"tissue_epidermis": 0.9763746417469071,
"tissue_blood_vessel": 0.3665841033927223
}
}
],
"aggregates": {
"f1_nuclei": {
"nuclei_other": 0.49766268778056993,
"nuclei_tumor": 0.7991072817518837,
"nuclei_lymphocyte": 0.6536769986855265
},
"dice_tissue": {
"average_dice": 0.8036217706761506,
"tissue_tumor": 0.8932065133842467,
"tissue_stroma": 0.6188179948097307,
"tissue_necrosis": 0.9438468314226377,
"tissue_epidermis": 0.9567388854210214,
"tissue_blood_vessel": 0.6054986283431166
},
"macro_f1_nuclei": 0.6501489894059934,
"micro_dice_tissue": {
"tissue_tumor": 0.9207831120671218,
"tissue_stroma": 0.8128003792877769,
"tissue_necrosis": 0.467961379517099,
"tissue_epidermis": 0.8732377720954536,
"average_micro_dice": 0.7236965515656609,
"tissue_blood_vessel": 0.5437001148608536
}
}
}