Evaluation

Evaluation ID
f2fe8463-ded5-40fb-971e-9309f32df7e7
Submission ID
0e180a5f-ddb3-4024-90f1-3d995f071ad0
Method ID
dc854b14-ba0a-43df-af86-bc99177f9066
Status
Succeeded
User
User Mugshot NiTo 
Challenge
PUMA
Phase
Track 2: Preliminary test phase
Algorithm
Track2Puma (Image Version 80f551fb-b041-461d-9382-4e2caf49e02b )
Submission created
Aug. 4, 2025, 12:07 p.m.
Result created
Aug. 4, 2025, 12:07 p.m.
Position on leaderboard
8
Comment:
instFinal1

Metrics

{
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}